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FF:49-24D7

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Name:adrenal gland, adult
Species:Mouse (Mus musculus)
Library ID:CNhs10508
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueadrenal gland
dev stageadult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005456
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10508 CAGE DRX008927 DRR009801
Accession ID Mm9

Library idBAMCTSS
CNhs10508 DRZ001226 DRZ002609
Accession ID Mm10

Library idBAMCTSS
CNhs10508 DRZ012576 DRZ013959
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sample
Ranked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sample
Ranked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10508

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0.0601
10 0
100 0
1000 0.0993
1001 0.0498
1002 0.0227
1003 -0.0503
1004 0
1005 0.0311
1006 0.162
1007 -0.0614
1008 0
1009 0.37
101 -0.0018
1010 0
1011 0.00281
1012 0
1013 0.234
1014 -0.0874
1015 -0.116
1016 0.0359
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.283
1023 0
1024 0.0881
1025 0
1026 0
1027 0
1028 0
1029 0.0219
103 -0.0736
1030 0
1031 -0.037
1032 0.0482
1033 0.0599
1034 0
1035 0
1036 -0.213
1037 0
1038 0.12
1039 0.317
104 0
1040 0.105
1041 0.802



Repeat families with enriched expression in this sample
Summary:Ranked list of repeat family expression in this sample relative to

the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA



link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs
Summary:Association of JASPAR motif to the promoter expression in this

sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10508
Jaspar motif P-value
MA0002.2 0.11
MA0003.1 0.212
MA0004.1 0.318
MA0006.1 0.736
MA0007.1 0.567
MA0009.1 0.212
MA0014.1 0.351
MA0017.1 0.808
MA0018.2 0.101
MA0019.1 0.924
MA0024.1 1.35738e-9
MA0025.1 0.0324
MA0027.1 0.93
MA0028.1 0.0918
MA0029.1 0.00713
MA0030.1 0.389
MA0031.1 0.21
MA0035.2 0.496
MA0038.1 0.611
MA0039.2 0.164
MA0040.1 0.324
MA0041.1 0.323
MA0042.1 0.889
MA0043.1 0.409
MA0046.1 4.43873e-4
MA0047.2 0.364
MA0048.1 0.0465
MA0050.1 3.13063e-9
MA0051.1 4.90219e-6
MA0052.1 0.0487
MA0055.1 5.2659e-4
MA0057.1 0.689
MA0058.1 0.443
MA0059.1 0.0384
MA0060.1 3.56831e-7
MA0061.1 0.89
MA0062.2 0.356
MA0065.2 0.364
MA0066.1 0.264
MA0067.1 0.526
MA0068.1 0.6
MA0069.1 0.499
MA0070.1 0.0127
MA0071.1 0.188
MA0072.1 0.118
MA0073.1 0.748
MA0074.1 0.604
MA0076.1 0.19
MA0077.1 0.17
MA0078.1 0.0387
MA0079.2 0.0126
MA0080.2 0.0246
MA0081.1 0.252
MA0083.1 0.972
MA0084.1 0.247
MA0087.1 0.453
MA0088.1 0.775
MA0090.1 0.601
MA0091.1 0.204
MA0092.1 0.513
MA0093.1 0.464
MA0099.2 0.0169
MA0100.1 0.11
MA0101.1 0.861
MA0102.2 0.319
MA0103.1 3.00646e-5
MA0104.2 0.0939
MA0105.1 0.0319
MA0106.1 0.236
MA0107.1 0.673
MA0108.2 4.56712e-4
MA0111.1 0.899
MA0112.2 0.43
MA0113.1 0.61
MA0114.1 0.865
MA0115.1 0.329
MA0116.1 0.757
MA0117.1 0.144
MA0119.1 0.705
MA0122.1 0.322
MA0124.1 0.344
MA0125.1 0.53
MA0131.1 0.153
MA0135.1 0.142
MA0136.1 0.108
MA0137.2 0.744
MA0138.2 0.0184
MA0139.1 0.705
MA0140.1 0.419
MA0141.1 0.184
MA0142.1 0.601
MA0143.1 0.436
MA0144.1 0.894
MA0145.1 0.164
MA0146.1 0.156
MA0147.1 0.0403
MA0148.1 0.927
MA0149.1 0.787
MA0150.1 0.00806
MA0152.1 0.948
MA0153.1 8.69554e-8
MA0154.1 0.28
MA0155.1 0.724
MA0156.1 0.0268
MA0157.1 0.195
MA0159.1 0.299
MA0160.1 0.145
MA0162.1 0.404
MA0163.1 0.0495
MA0164.1 0.754
MA0258.1 0.469
MA0259.1 0.0418



FANTOM5 phase1 novel unique motifs
Summary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in

169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10508
Novel motif P-value
1 0.118
10 0.126
100 0.113
101 0.108
102 0.606
103 0.97
104 0.728
105 0.693
106 0.688
107 0.715
108 0.203
109 0.711
11 0.821
110 0.905
111 0.792
112 0.218
113 0.0547
114 0.364
115 0.0687
116 0.0779
117 0.0155
118 0.985
119 0.114
12 0.884
120 0.0084
121 0.12
122 0.251
123 0.248
124 0.0199
125 0.456
126 0.0658
127 0.147
128 0.445
129 0.269
13 0.0351
130 0.275
131 0.194
132 0.539
133 0.855
134 0.888
135 0.0913
136 0.502
137 0.562
138 0.159
139 0.131
14 0.118
140 0.212
141 0.398
142 0.526
143 0.853
144 0.976
145 0.16
146 0.274
147 0.69
148 0.926
149 0.00273
15 0.369
150 0.981
151 0.226
152 0.0087
153 0.673
154 0.489
155 0.765
156 3.6108e-4
157 0.229
158 0.478
159 0.731
160 0.601
161 0.246
162 0.867
163 0.206
164 0.939
165 0.692
166 0.336
167 0.0721
168 0.68
169 0.174
17 0.95
18 0.788
19 0.378
2 0.0382
20 0.0338
21 0.591
22 0.104
23 0.611
24 0.281
25 0.75
26 0.0177
27 0.397
28 0.95
29 0.0604
3 0.976
30 0.493
31 0.685
32 0.266
33 0.0989
34 0.795
35 0.779
36 0.191
37 0.847
38 0.272
39 0.681
4 0.24
40 0.613
41 0.00744
42 0.795
43 0.736
44 0.626
45 0.512
46 0.164
47 0.908
48 0.657
49 0.904
5 0.823
50 0.983
51 0.827
52 0.918
53 0.147
54 0.928
55 0.0326
56 0.381
57 0.138
58 0.794
59 0.888
6 0.765
60 0.928
61 0.418
62 0.581
63 0.844
64 0.932
65 0.746
66 0.277
67 0.416
68 0.924
69 0.476
7 0.257
70 0.82
71 0.00782
72 0.39
73 0.156
74 0.582
75 0.332
76 0.532
77 0.637
78 0.897
79 0.319
8 0.423
80 0.553
81 0.123
82 0.0167
83 0.0202
84 0.119
85 0.802
86 0.841
87 0.348
88 0.513
89 0.85
9 0.918
90 0.251
91 0.00151
92 0.634
93 0.657
94 0.287
95 0.613
96 0.867
97 0.132
98 0.68
99 0.731



de novo motifs identified by HOMER in promoters active in this sample
Summary:The result of HOMER in this sample is shown.
Analyst:NA

library id: CNhs10508


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)
Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji



link to source data

data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002369 (adrenal gland)
0002100 (trunk)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011373 (mouse adrenal gland - adult sample)

Ancestor terms (development)
Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship

Analyst: Hideya Kawaji

link to source data

data


UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)