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FF:403-26D4

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Name:heart, embryo E14
Species:Mouse (Mus musculus)
Library ID:CNhs10597
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueheart
dev stage14 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00004723
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10597 CAGE DRX008974 DRR009848
Accession ID Mm9

Library idBAMCTSS
CNhs10597 DRZ001273 DRZ002656
Accession ID Mm10

Library idBAMCTSS
CNhs10597 DRZ012623 DRZ014006
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sample
Ranked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sample
Ranked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10597

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0.168
100 0
1000 0.224
1001 0.229
1002 0.42
1003 0.031
1004 0
1005 -0.0389
1006 0.13
1007 0.0374
1008 0
1009 0.176
101 0.0272
1010 0
1011 0.00205
1012 0
1013 -0.206
1014 0.337
1015 0.0796
1016 0.182
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.372
1023 0
1024 0.168
1025 0.168
1026 0
1027 0
1028 0
1029 0.162
103 0.121
1030 0
1031 0.433
1032 0.0165
1033 -0.0665
1034 0
1035 0.339
1036 -0.107
1037 0
1038 0.0733
1039 0.0767
104 0
1040 0.173
1041 0



Repeat families with enriched expression in this sample
Summary:Ranked list of repeat family expression in this sample relative to

the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA



link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs
Summary:Association of JASPAR motif to the promoter expression in this

sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10597
Jaspar motif P-value
MA0002.2 0.0105
MA0003.1 0.766
MA0004.1 0.552
MA0006.1 0.779
MA0007.1 0.138
MA0009.1 0.862
MA0014.1 0.909
MA0017.1 6.43601e-5
MA0018.2 0.824
MA0019.1 0.869
MA0024.1 9.77362e-5
MA0025.1 0.628
MA0027.1 0.0642
MA0028.1 0.227
MA0029.1 0.583
MA0030.1 0.283
MA0031.1 0.195
MA0035.2 0.139
MA0038.1 0.559
MA0039.2 0.0577
MA0040.1 0.112
MA0041.1 0.809
MA0042.1 0.659
MA0043.1 0.998
MA0046.1 1.65958e-17
MA0047.2 0.0973
MA0048.1 0.286
MA0050.1 2.12038e-6
MA0051.1 0.00843
MA0052.1 6.37523e-32
MA0055.1 0.0176
MA0057.1 0.745
MA0058.1 0.716
MA0059.1 0.437
MA0060.1 0.038
MA0061.1 0.038
MA0062.2 5.7074e-4
MA0065.2 0.0133
MA0066.1 0.321
MA0067.1 0.896
MA0068.1 0.214
MA0069.1 0.548
MA0070.1 0.784
MA0071.1 0.358
MA0072.1 0.0649
MA0073.1 0.952
MA0074.1 0.845
MA0076.1 0.078
MA0077.1 0.345
MA0078.1 0.228
MA0079.2 0.259
MA0080.2 0.0259
MA0081.1 0.95
MA0083.1 1.59054e-17
MA0084.1 0.726
MA0087.1 0.574
MA0088.1 0.0746
MA0090.1 0.00177
MA0091.1 0.439
MA0092.1 0.991
MA0093.1 0.631
MA0099.2 6.86176e-6
MA0100.1 0.924
MA0101.1 0.118
MA0102.2 0.00825
MA0103.1 1.80007e-6
MA0104.2 0.645
MA0105.1 0.0758
MA0106.1 0.406
MA0107.1 0.187
MA0108.2 0.135
MA0111.1 0.293
MA0112.2 0.35
MA0113.1 0.964
MA0114.1 2.8122e-7
MA0115.1 0.37
MA0116.1 0.00114
MA0117.1 0.159
MA0119.1 0.373
MA0122.1 0.397
MA0124.1 0.264
MA0125.1 0.442
MA0131.1 0.703
MA0135.1 0.93
MA0136.1 0.0192
MA0137.2 0.00876
MA0138.2 0.072
MA0139.1 0.0477
MA0140.1 0.2
MA0141.1 0.161
MA0142.1 0.517
MA0143.1 0.778
MA0144.1 0.219
MA0145.1 0.237
MA0146.1 0.917
MA0147.1 0.414
MA0148.1 0.076
MA0149.1 0.0721
MA0150.1 1.62098e-4
MA0152.1 0.732
MA0153.1 1.6555e-11
MA0154.1 0.104
MA0155.1 0.152
MA0156.1 0.00276
MA0157.1 0.268
MA0159.1 0.917
MA0160.1 0.42
MA0162.1 0.452
MA0163.1 0.354
MA0164.1 0.396
MA0258.1 0.143
MA0259.1 0.807



FANTOM5 phase1 novel unique motifs
Summary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in

169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10597
Novel motif P-value
1 0.3
10 0.153
100 0.601
101 0.959
102 0.552
103 0.025
104 0.796
105 0.726
106 0.411
107 0.965
108 0.774
109 0.388
11 0.0988
110 0.791
111 0.96
112 0.105
113 0.922
114 0.266
115 0.673
116 0.149
117 0.507
118 0.99
119 0.152
12 0.44
120 0.252
121 0.937
122 0.4
123 0.124
124 0.993
125 0.719
126 0.569
127 0.218
128 0.0505
129 0.255
13 0.105
130 0.175
131 0.632
132 0.956
133 0.895
134 0.702
135 0.781
136 0.152
137 0.703
138 0.104
139 0.499
14 0.784
140 0.763
141 0.0645
142 0.646
143 0.391
144 0.239
145 0.508
146 0.601
147 0.714
148 0.527
149 0.928
15 0.132
150 0.515
151 0.0713
152 0.804
153 0.133
154 0.737
155 0.104
156 0.219
157 0.712
158 0.639
159 0.189
160 0.399
161 0.707
162 0.925
163 0.748
164 0.278
165 0.928
166 0.506
167 0.387
168 0.968
169 0.222
17 0.0467
18 0.086
19 0.826
2 0.722
20 0.826
21 0.785
22 0.629
23 0.191
24 0.918
25 0.32
26 0.187
27 0.387
28 0.239
29 0.833
3 0.0868
30 0.203
31 0.34
32 0.393
33 0.0947
34 0.496
35 0.0447
36 0.076
37 0.523
38 0.395
39 0.488
4 0.56
40 0.00697
41 0.976
42 0.191
43 0.176
44 0.545
45 0.421
46 0.494
47 0.394
48 0.271
49 0.236
5 0.438
50 0.559
51 0.793
52 0.815
53 0.898
54 0.578
55 0.262
56 0.52
57 0.745
58 0.481
59 0.362
6 0.0467
60 0.444
61 0.844
62 0.187
63 0.741
64 0.463
65 0.228
66 0.896
67 0.926
68 0.238
69 0.426
7 0.947
70 0.00146
71 0.928
72 0.128
73 0.541
74 0.763
75 0.02
76 0.798
77 0.221
78 0.621
79 0.124
8 0.139
80 0.0495
81 0.418
82 0.187
83 0.563
84 0.442
85 0.483
86 0.636
87 0.00125
88 0.36
89 0.25
9 0.682
90 0.113
91 0.664
92 0.132
93 0.279
94 0.888
95 0.439
96 0.569
97 0.198
98 0.187
99 0.51



de novo motifs identified by HOMER in promoters active in this sample
Summary:The result of HOMER in this sample is shown.
Analyst:NA

library id: CNhs10597


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)
Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji



link to source data

data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000296 (mouse embryonic day 14 sample)
0011337 (mouse heart- embryo E14 sample)

Ancestor terms (development)
Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship

Analyst: Hideya Kawaji

link to source data

data


UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)