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FF:46-23H1

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Name:aorta, adult
Species:Mouse (Mus musculus)
Library ID:CNhs10498
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueaorta
dev stageadult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005242
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10498 CAGE DRX008935 DRR009809
Accession ID Mm9

Library idBAMCTSS
CNhs10498 DRZ001234 DRZ002617
Accession ID Mm10

Library idBAMCTSS
CNhs10498 DRZ012584 DRZ013967
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sample
Ranked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sample
Ranked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10498

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.217
1001 0.171
1002 0.197
1003 0.112
1004 0
1005 0
1006 0.202
1007 -0.169
1008 0
1009 0.444
101 -0.0128
1010 0
1011 0.049
1012 0
1013 -0.00452
1014 -0.0874
1015 -0.268
1016 -0.105
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.849
1023 0
1024 0.432
1025 0.0374
1026 0
1027 0
1028 0
1029 0.0114
103 -0.00232
1030 0.0587
1031 -0.0192
1032 0.116
1033 0.0169
1034 0
1035 0.156
1036 -0.302
1037 0
1038 0.036
1039 0.426
104 0
1040 0.43
1041 1.361



Repeat families with enriched expression in this sample
Summary:Ranked list of repeat family expression in this sample relative to

the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA



link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs
Summary:Association of JASPAR motif to the promoter expression in this

sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10498
Jaspar motif P-value
MA0002.2 0.0479
MA0003.1 0.217
MA0004.1 0.679
MA0006.1 0.182
MA0007.1 0.282
MA0009.1 0.784
MA0014.1 0.132
MA0017.1 0.0674
MA0018.2 0.339
MA0019.1 0.161
MA0024.1 8.52595e-9
MA0025.1 1.96307e-7
MA0027.1 0.772
MA0028.1 0.0612
MA0029.1 0.706
MA0030.1 0.843
MA0031.1 0.165
MA0035.2 0.343
MA0038.1 0.596
MA0039.2 0.0052
MA0040.1 0.61
MA0041.1 0.178
MA0042.1 0.605
MA0043.1 0.64
MA0046.1 5.04885e-9
MA0047.2 0.781
MA0048.1 0.141
MA0050.1 5.52138e-12
MA0051.1 1.47363e-9
MA0052.1 5.03028e-8
MA0055.1 0.307
MA0057.1 0.678
MA0058.1 0.526
MA0059.1 0.0344
MA0060.1 2.97078e-6
MA0061.1 0.337
MA0062.2 0.0441
MA0065.2 1.70722e-7
MA0066.1 0.944
MA0067.1 0.742
MA0068.1 0.14
MA0069.1 0.354
MA0070.1 0.85
MA0071.1 0.24
MA0072.1 0.635
MA0073.1 0.473
MA0074.1 0.61
MA0076.1 0.0894
MA0077.1 0.0941
MA0078.1 0.0077
MA0079.2 0.0209
MA0080.2 0.00377
MA0081.1 0.559
MA0083.1 4.13628e-9
MA0084.1 0.779
MA0087.1 0.562
MA0088.1 0.174
MA0090.1 0.112
MA0091.1 0.371
MA0092.1 0.573
MA0093.1 0.716
MA0099.2 0.541
MA0100.1 0.0217
MA0101.1 0.559
MA0102.2 4.67632e-4
MA0103.1 1.58905e-4
MA0104.2 0.107
MA0105.1 0.601
MA0106.1 0.724
MA0107.1 0.346
MA0108.2 0.908
MA0111.1 0.96
MA0112.2 0.00122
MA0113.1 0.296
MA0114.1 0.0122
MA0115.1 0.773
MA0116.1 0.986
MA0117.1 0.283
MA0119.1 0.469
MA0122.1 0.406
MA0124.1 0.491
MA0125.1 0.841
MA0131.1 0.56
MA0135.1 0.235
MA0136.1 0.188
MA0137.2 0.0931
MA0138.2 0.597
MA0139.1 0.376
MA0140.1 0.305
MA0141.1 0.00486
MA0142.1 0.0641
MA0143.1 0.149
MA0144.1 0.147
MA0145.1 0.0589
MA0146.1 0.0538
MA0147.1 0.12
MA0148.1 0.506
MA0149.1 0.959
MA0150.1 0.0732
MA0152.1 0.421
MA0153.1 2.23686e-8
MA0154.1 0.0096
MA0155.1 0.743
MA0156.1 0.02
MA0157.1 0.022
MA0159.1 0.184
MA0160.1 0.00218
MA0162.1 0.133
MA0163.1 0.611
MA0164.1 0.0789
MA0258.1 0.0726
MA0259.1 0.126



FANTOM5 phase1 novel unique motifs
Summary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in

169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10498
Novel motif P-value
1 0.741
10 0.77
100 0.637
101 0.307
102 0.246
103 0.731
104 0.965
105 0.145
106 0.121
107 0.333
108 0.586
109 0.336
11 0.728
110 0.387
111 0.105
112 0.343
113 0.214
114 0.14
115 0.567
116 0.555
117 0.157
118 0.411
119 0.365
12 0.659
120 0.0129
121 0.0781
122 0.895
123 0.398
124 0.752
125 0.908
126 0.666
127 0.996
128 0.167
129 0.515
13 0.00132
130 0.195
131 0.543
132 0.837
133 0.326
134 0.289
135 0.319
136 0.693
137 0.808
138 0.93
139 0.965
14 0.413
140 0.777
141 0.453
142 0.285
143 0.492
144 0.673
145 0.989
146 0.126
147 0.994
148 0.423
149 0.00304
15 0.476
150 0.553
151 0.0553
152 0.0369
153 0.817
154 0.774
155 0.891
156 0.134
157 0.522
158 0.985
159 0.421
160 0.163
161 0.252
162 0.449
163 0.0564
164 0.564
165 0.0934
166 0.035
167 0.176
168 0.364
169 0.00953
17 0.252
18 0.271
19 0.0999
2 0.0525
20 0.259
21 0.284
22 0.0584
23 0.467
24 0.0326
25 0.558
26 0.951
27 0.891
28 0.793
29 0.383
3 0.981
30 0.854
31 0.876
32 0.407
33 0.441
34 0.305
35 0.23
36 0.524
37 0.0336
38 0.337
39 0.388
4 0.695
40 0.923
41 0.391
42 0.951
43 0.278
44 0.567
45 0.101
46 0.761
47 0.895
48 0.658
49 0.981
5 0.71
50 0.323
51 0.711
52 0.21
53 0.144
54 0.587
55 0.365
56 0.436
57 0.166
58 0.438
59 0.242
6 0.792
60 0.106
61 0.963
62 0.474
63 0.113
64 0.884
65 0.508
66 0.874
67 0.423
68 0.887
69 0.884
7 0.048
70 0.77
71 0.337
72 0.66
73 0.0275
74 0.0847
75 0.841
76 0.217
77 0.379
78 0.00758
79 0.718
8 0.619
80 0.0815
81 0.417
82 0.105
83 0.0929
84 0.0303
85 0.0742
86 0.237
87 0.431
88 0.966
89 0.667
9 0.191
90 0.354
91 0.243
92 0.354
93 0.195
94 0.194
95 0.195
96 0.222
97 0.168
98 0.346
99 0.635



de novo motifs identified by HOMER in promoters active in this sample
Summary:The result of HOMER in this sample is shown.
Analyst:NA

library id: CNhs10498


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)
Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji



link to source data

data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011359 (mouse aorta - adult sample)

Ancestor terms (development)
Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship

Analyst: Hideya Kawaji

link to source data

data


UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0006965 (vascular cord)
UBERON:0010316 (germ layer / neural crest)