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FF:91-2I7

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Name:ovary, adult
Species:Mouse (Mus musculus)
Library ID:CNhs10507
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueovary
dev stageadult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005245
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10507 CAGE DRX009050 DRR009924
Accession ID Mm9

Library idBAMCTSS
CNhs10507 DRZ001349 DRZ002732
Accession ID Mm10

Library idBAMCTSS
CNhs10507 DRZ012699 DRZ014082
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10507

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0576
1001 0.0957
1002 0.0994
1003 0.149
1004 0.974
1005 0
1006 0.0119
1007 0.0232
1008 0
1009 0.325
101 0.0362
1010 0
1011 0.0576
1012 0
1013 0.0652
1014 --0.0275
1015 --0.0815
1016 0.0326
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.351
1023 0
1024 0.168
1025 0.0576
1026 0
1027 0
1028 0.109
1029 0.0184
103 0.0576
1030 0
1031 0.249
1032 0.091
1033 0.0576
1034 0.0576
1035 0.0576
1036 --0.106
1037 0
1038 0.0561
1039 0.153
104 0
1040 0.237
1041 0.815



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10507

Jaspar motif P-value
MA0002.2 0.224
MA0003.1 0.0512
MA0004.1 0.395
MA0006.1 0.135
MA0007.1 0.903
MA0009.1 0.929
MA0014.1 0.829
MA0017.1 1.53374e-4
MA0018.2 0.05
MA0019.1 0.568
MA0024.1 0.0503
MA0025.1 0.0191
MA0027.1 0.944
MA0028.1 0.00764
MA0029.1 0.7
MA0030.1 0.176
MA0031.1 0.161
MA0035.2 0.183
MA0038.1 9.33449e-4
MA0039.2 0.0177
MA0040.1 0.189
MA0041.1 0.36
MA0042.1 0.788
MA0043.1 0.536
MA0046.1 4.47539e-9
MA0047.2 0.707
MA0048.1 0.203
MA0050.1 1.53208e-4
MA0051.1 0.00135
MA0052.1 0.448
MA0055.1 0.151
MA0057.1 0.866
MA0058.1 0.346
MA0059.1 0.0159
MA0060.1 0.99
MA0061.1 0.765
MA0062.2 0.00778
MA0065.2 0.659
MA0066.1 0.0169
MA0067.1 0.673
MA0068.1 0.216
MA0069.1 0.794
MA0070.1 0.411
MA0071.1 0.857
MA0072.1 0.578
MA0073.1 0.89
MA0074.1 0.627
MA0076.1 0.0765
MA0077.1 0.393
MA0078.1 0.0018
MA0079.2 0.0168
MA0080.2 0.674
MA0081.1 0.809
MA0083.1 7.5881e-6
MA0084.1 0.665
MA0087.1 0.989
MA0088.1 0.881
MA0090.1 0.688
MA0091.1 0.0405
MA0092.1 0.254
MA0093.1 0.523
MA0099.2 0.466
MA0100.1 0.439
MA0101.1 0.809
MA0102.2 0.638
MA0103.1 0.0819
MA0104.2 0.0603
MA0105.1 0.0204
MA0106.1 0.323
MA0107.1 0.725
MA0108.2 0.0417
MA0111.1 0.388
MA0112.2 0.456
MA0113.1 0.758
MA0114.1 0.0033
MA0115.1 0.00333
MA0116.1 0.0966
MA0117.1 0.692
MA0119.1 0.326
MA0122.1 0.993
MA0124.1 0.85
MA0125.1 0.788
MA0131.1 0.459
MA0135.1 0.405
MA0136.1 0.957
MA0137.2 0.407
MA0138.2 0.88
MA0139.1 0.519
MA0140.1 0.0441
MA0141.1 0.849
MA0142.1 0.434
MA0143.1 0.356
MA0144.1 0.573
MA0145.1 0.0567
MA0146.1 0.274
MA0147.1 0.0208
MA0148.1 0.548
MA0149.1 0.141
MA0150.1 0.85
MA0152.1 0.205
MA0153.1 1.36444e-6
MA0154.1 0.802
MA0155.1 0.705
MA0156.1 0.568
MA0157.1 0.00738
MA0159.1 0.00265
MA0160.1 0.844
MA0162.1 0.68
MA0163.1 0.0834
MA0164.1 0.215
MA0258.1 0.979
MA0259.1 0.062



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10507

Novel motif P-value
1 0.147
10 0.0897
100 0.167
101 0.488
102 0.785
103 0.313
104 0.632
105 0.661
106 0.681
107 0.345
108 0.725
109 0.825
11 0.224
110 0.743
111 0.288
112 0.577
113 0.924
114 0.104
115 0.556
116 0.301
117 0.0025
118 0.221
119 0.923
12 0.51
120 0.0654
121 0.0464
122 0.381
123 0.459
124 0.643
125 0.15
126 0.242
127 0.368
128 0.67
129 0.94
13 0.833
130 0.151
131 0.0589
132 0.926
133 0.493
134 0.529
135 0.653
136 0.105
137 0.672
138 0.0501
139 0.884
14 0.702
140 0.911
141 0.144
142 0.373
143 0.122
144 0.365
145 0.641
146 0.404
147 0.435
148 0.898
149 0.139
15 0.662
150 0.351
151 0.604
152 0.0253
153 0.807
154 0.892
155 0.511
156 0.0906
157 0.502
158 0.12
159 0.15
160 0.365
161 0.555
162 0.701
163 0.501
164 0.208
165 0.863
166 0.119
167 0.00973
168 0.436
169 0.0949
17 0.602
18 0.0233
19 0.0952
2 0.069
20 0.0786
21 0.799
22 0.404
23 0.896
24 0.297
25 0.405
26 0.966
27 0.585
28 0.923
29 0.121
3 0.388
30 0.197
31 0.496
32 0.0478
33 0.537
34 0.707
35 0.0374
36 0.0075
37 0.855
38 0.845
39 0.931
4 0.492
40 0.351
41 0.0875
42 0.667
43 0.356
44 0.397
45 0.295
46 0.418
47 0.856
48 0.655
49 0.0374
5 0.267
50 0.615
51 0.842
52 0.407
53 0.109
54 0.571
55 0.765
56 0.811
57 0.177
58 0.786
59 0.585
6 0.77
60 0.918
61 0.687
62 0.289
63 0.88
64 0.352
65 0.795
66 0.926
67 0.557
68 0.17
69 0.433
7 0.729
70 0.429
71 0.0774
72 0.62
73 0.555
74 0.67
75 0.0812
76 3.99234e-4
77 0.282
78 0.279
79 0.72
8 0.0815
80 0.371
81 0.74
82 0.306
83 0.16
84 0.4
85 0.913
86 0.917
87 0.16
88 0.722
89 0.934
9 0.434
90 0.0139
91 0.267
92 0.321
93 0.171
94 0.151
95 0.409
96 0.143
97 0.0845
98 0.416
99 0.254



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10507


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011439 (mouse ovary- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)