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FF:405-44F4

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Name:pancreas, embryo E14
Species:Mouse (Mus musculus)
Library ID:CNhs11012
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage14 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00004683
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11012 CAGE DRX009055 DRR009929
Accession ID Mm9

Library idBAMCTSS
CNhs11012 DRZ001354 DRZ002737
Accession ID Mm10

Library idBAMCTSS
CNhs11012 DRZ012704 DRZ014087
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11012

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0117
1001 0.00785
1002 0.491
1003 --0.0469
1004 0
1005 0
1006 --0.143
1007 -3.128138e-4
1008 0
1009 --0.0281
101 0.102
1010 0.768
1011 --0.0131
1012 0.0944
1013 --0.126
1014 0.643
1015 0.167
1016 0.0893
1017 0
1018 0
1019 0
102 0
1020 0
1021 0.0163
1022 --0.0632
1023 0
1024 0.082
1025 0.233
1026 0
1027 0.0334
1028 0
1029 --0.00496
103 0.172
1030 0
1031 0.206
1032 --0.0822
1033 0.0967
1034 0.0322
1035 0
1036 0.208
1037 0
1038 --0.0941
1039 --0.0117
104 0
1040 0.0791
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11012

Jaspar motif P-value
MA0002.2 2.91802e-4
MA0003.1 0.749
MA0004.1 0.399
MA0006.1 0.897
MA0007.1 0.44
MA0009.1 0.842
MA0014.1 0.611
MA0017.1 0.0467
MA0018.2 0.0304
MA0019.1 0.689
MA0024.1 5.47639e-10
MA0025.1 0.0123
MA0027.1 0.06
MA0028.1 0.00165
MA0029.1 0.303
MA0030.1 0.0277
MA0031.1 0.00594
MA0035.2 0.774
MA0038.1 0.442
MA0039.2 0.412
MA0040.1 0.0925
MA0041.1 0.21
MA0042.1 0.315
MA0043.1 0.6
MA0046.1 3.48631e-25
MA0047.2 0.621
MA0048.1 0.0488
MA0050.1 2.72432e-7
MA0051.1 1.30669e-7
MA0052.1 6.27851e-7
MA0055.1 0.00122
MA0057.1 0.417
MA0058.1 0.282
MA0059.1 1.79057e-4
MA0060.1 5.51113e-8
MA0061.1 0.731
MA0062.2 0.0308
MA0065.2 0.486
MA0066.1 0.583
MA0067.1 0.0131
MA0068.1 0.682
MA0069.1 0.365
MA0070.1 0.248
MA0071.1 0.222
MA0072.1 0.0224
MA0073.1 0.892
MA0074.1 0.163
MA0076.1 0.0127
MA0077.1 0.459
MA0078.1 0.909
MA0079.2 0.298
MA0080.2 2.0505e-6
MA0081.1 0.0951
MA0083.1 0.166
MA0084.1 0.658
MA0087.1 0.61
MA0088.1 0.285
MA0090.1 0.498
MA0091.1 0.0111
MA0092.1 0.802
MA0093.1 0.392
MA0099.2 1.72416e-5
MA0100.1 0.528
MA0101.1 0.532
MA0102.2 0.0471
MA0103.1 0.182
MA0104.2 0.031
MA0105.1 0.166
MA0106.1 0.71
MA0107.1 0.115
MA0108.2 0.451
MA0111.1 0.461
MA0112.2 0.754
MA0113.1 0.777
MA0114.1 0.0509
MA0115.1 0.422
MA0116.1 0.519
MA0117.1 0.0213
MA0119.1 0.902
MA0122.1 0.157
MA0124.1 0.465
MA0125.1 0.748
MA0131.1 0.0818
MA0135.1 0.632
MA0136.1 7.54696e-4
MA0137.2 0.425
MA0138.2 0.00365
MA0139.1 0.46
MA0140.1 0.0911
MA0141.1 0.32
MA0142.1 0.353
MA0143.1 0.476
MA0144.1 0.71
MA0145.1 0.733
MA0146.1 0.611
MA0147.1 0.00196
MA0148.1 0.681
MA0149.1 0.587
MA0150.1 4.72773e-4
MA0152.1 0.999
MA0153.1 1.39388e-13
MA0154.1 0.819
MA0155.1 0.169
MA0156.1 0.13
MA0157.1 0.0267
MA0159.1 0.586
MA0160.1 0.121
MA0162.1 0.307
MA0163.1 0.00448
MA0164.1 0.418
MA0258.1 0.298
MA0259.1 0.216



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11012

Novel motif P-value
1 0.362
10 0.311
100 0.395
101 0.502
102 0.676
103 0.616
104 0.974
105 0.242
106 0.126
107 0.0515
108 0.976
109 0.472
11 0.738
110 0.405
111 0.184
112 0.39
113 0.0589
114 0.00586
115 0.536
116 0.69
117 0.254
118 0.521
119 0.204
12 0.462
120 0.854
121 0.834
122 0.712
123 0.0577
124 0.0832
125 0.204
126 0.349
127 0.335
128 0.228
129 0.0108
13 0.0319
130 0.335
131 0.956
132 0.631
133 0.86
134 0.0943
135 0.416
136 0.374
137 0.934
138 0.219
139 0.0371
14 0.276
140 0.633
141 0.495
142 0.664
143 0.701
144 0.37
145 0.774
146 0.425
147 0.538
148 0.581
149 0.823
15 0.162
150 0.915
151 0.0298
152 0.734
153 0.638
154 0.484
155 0.577
156 2.38952e-5
157 0.896
158 0.809
159 0.598
160 0.344
161 0.428
162 0.351
163 0.0592
164 0.743
165 0.493
166 0.382
167 0.971
168 0.915
169 0.745
17 0.352
18 0.608
19 0.492
2 0.26
20 0.39
21 0.46
22 0.949
23 0.00829
24 0.656
25 0.432
26 0.0583
27 0.31
28 0.0427
29 0.415
3 0.949
30 0.758
31 0.663
32 0.664
33 0.6
34 0.975
35 0.37
36 0.344
37 0.826
38 0.709
39 0.518
4 0.544
40 0.303
41 0.0521
42 0.594
43 0.155
44 0.979
45 0.424
46 0.833
47 0.721
48 0.713
49 0.173
5 0.0905
50 0.506
51 0.469
52 0.493
53 0.345
54 0.184
55 0.665
56 0.933
57 0.923
58 0.441
59 0.551
6 0.209
60 0.421
61 0.482
62 0.176
63 0.44
64 0.967
65 0.663
66 0.207
67 0.768
68 0.479
69 0.807
7 0.69
70 0.00591
71 0.288
72 0.288
73 0.425
74 0.161
75 0.806
76 0.301
77 0.538
78 0.227
79 0.852
8 0.31
80 0.167
81 0.207
82 0.453
83 0.543
84 0.0858
85 0.0387
86 0.986
87 0.503
88 0.844
89 0.307
9 0.486
90 0.907
91 0.623
92 0.351
93 0.696
94 0.169
95 0.31
96 0.6
97 0.896
98 0.647
99 0.261



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11012


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000296 (mouse embryonic day 14 sample)
0011262 (mouse pancreas- embryo E14 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

FF:0000294 (mouse embryonic day 11 sample)