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FF:645-26G9

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Name:pancreas, neonate N00
Species:Mouse (Mus musculus)
Library ID:CNhs11105
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage0 day neonate
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005164
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11105 CAGE DRX009060 DRR009934
Accession ID Mm9

Library idBAMCTSS
CNhs11105 DRZ001359 DRZ002742
Accession ID Mm10

Library idBAMCTSS
CNhs11105 DRZ012709 DRZ014092
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11105

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0272
1001 --0.0596
1002 0.0484
1003 --0.0457
1004 0
1005 0
1006 --0.0453
1007 0.098
1008 0
1009 0.16
101 0.0366
1010 0.249
1011 --0.0837
1012 0
1013 0.213
1014 0.319
1015 --0.0489
1016 0.0881
1017 0
1018 0.133
1019 0
102 0
1020 0
1021 0
1022 0.172
1023 0
1024 0
1025 0.426
1026 0
1027 0
1028 0
1029 0.0821
103 0.181
1030 0
1031 0.178
1032 0.132
1033 0
1034 0.33
1035 0
1036 0.0406
1037 0
1038 0.0786
1039 0.0288
104 0
1040 0.163
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11105

Jaspar motif P-value
MA0002.2 0.755
MA0003.1 0.205
MA0004.1 0.733
MA0006.1 0.0197
MA0007.1 0.138
MA0009.1 0.974
MA0014.1 0.736
MA0017.1 9.21128e-16
MA0018.2 0.00892
MA0019.1 0.227
MA0024.1 0.00845
MA0025.1 0.417
MA0027.1 0.336
MA0028.1 0.0447
MA0029.1 0.489
MA0030.1 0.251
MA0031.1 0.16
MA0035.2 3.68645e-5
MA0038.1 0.953
MA0039.2 0.00111
MA0040.1 0.844
MA0041.1 0.966
MA0042.1 0.426
MA0043.1 0.105
MA0046.1 3.08617e-64
MA0047.2 2.82087e-5
MA0048.1 0.674
MA0050.1 8.37301e-6
MA0051.1 0.00206
MA0052.1 0.00447
MA0055.1 0.535
MA0057.1 0.383
MA0058.1 0.652
MA0059.1 0.874
MA0060.1 0.335
MA0061.1 0.95
MA0062.2 0.0286
MA0065.2 3.08493e-5
MA0066.1 0.897
MA0067.1 0.494
MA0068.1 0.196
MA0069.1 0.0647
MA0070.1 0.864
MA0071.1 0.169
MA0072.1 0.43
MA0073.1 0.862
MA0074.1 0.0715
MA0076.1 0.0467
MA0077.1 0.559
MA0078.1 0.419
MA0079.2 0.0191
MA0080.2 0.156
MA0081.1 0.301
MA0083.1 0.77
MA0084.1 0.361
MA0087.1 0.791
MA0088.1 0.598
MA0090.1 0.0636
MA0091.1 0.222
MA0092.1 0.324
MA0093.1 0.695
MA0099.2 0.132
MA0100.1 4.96694e-4
MA0101.1 0.684
MA0102.2 0.477
MA0103.1 6.9336e-5
MA0104.2 0.138
MA0105.1 0.276
MA0106.1 0.542
MA0107.1 0.508
MA0108.2 0.00158
MA0111.1 0.988
MA0112.2 0.0984
MA0113.1 0.691
MA0114.1 1.03194e-20
MA0115.1 4.4702e-4
MA0116.1 0.0606
MA0117.1 0.768
MA0119.1 0.487
MA0122.1 0.801
MA0124.1 0.552
MA0125.1 0.552
MA0131.1 0.716
MA0135.1 0.0115
MA0136.1 0.972
MA0137.2 0.00891
MA0138.2 0.56
MA0139.1 0.423
MA0140.1 0.00254
MA0141.1 0.154
MA0142.1 0.119
MA0143.1 0.263
MA0144.1 8.92654e-4
MA0145.1 0.0034
MA0146.1 0.218
MA0147.1 0.201
MA0148.1 1.83212e-7
MA0149.1 0.169
MA0150.1 0.981
MA0152.1 0.537
MA0153.1 5.1291e-32
MA0154.1 0.0733
MA0155.1 0.054
MA0156.1 0.328
MA0157.1 0.0761
MA0159.1 0.67
MA0160.1 0.194
MA0162.1 0.676
MA0163.1 0.237
MA0164.1 0.224
MA0258.1 0.579
MA0259.1 0.247



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11105

Novel motif P-value
1 0.873
10 0.381
100 0.474
101 0.533
102 0.472
103 0.486
104 0.707
105 0.243
106 0.00921
107 0.0196
108 0.601
109 0.225
11 0.706
110 1
111 0.344
112 0.102
113 0.412
114 0.9
115 0.619
116 0.274
117 0.447
118 0.364
119 0.374
12 0.254
120 0.383
121 0.506
122 0.297
123 0.633
124 0.229
125 0.213
126 0.234
127 0.958
128 0.331
129 0.339
13 0.00187
130 0.995
131 0.213
132 0.511
133 0.559
134 0.313
135 0.548
136 0.0033
137 0.236
138 0.00686
139 0.402
14 0.696
140 0.411
141 0.389
142 0.189
143 0.204
144 0.733
145 0.425
146 0.119
147 0.291
148 0.0315
149 0.309
15 0.945
150 0.337
151 0.785
152 0.00282
153 0.535
154 0.566
155 0.844
156 2.80409e-4
157 0.042
158 0.624
159 0.662
160 0.219
161 0.414
162 0.968
163 0.208
164 0.965
165 0.977
166 0.496
167 0.11
168 0.0673
169 0.0833
17 0.224
18 0.1
19 0.063
2 0.0407
20 0.336
21 0.73
22 0.188
23 0.271
24 0.38
25 0.699
26 0.0714
27 0.584
28 0.542
29 0.33
3 0.9
30 0.101
31 0.533
32 0.231
33 0.301
34 0.513
35 0.139
36 0.727
37 0.0745
38 0.461
39 0.15
4 0.212
40 0.401
41 0.11
42 0.909
43 0.704
44 0.72
45 0.0606
46 0.844
47 0.715
48 0.816
49 0.834
5 0.519
50 0.209
51 0.981
52 0.0359
53 0.538
54 0.812
55 0.0522
56 0.508
57 0.0702
58 0.908
59 0.123
6 0.905
60 0.0295
61 0.602
62 0.54
63 0.428
64 0.854
65 0.519
66 0.984
67 0.358
68 0.384
69 0.959
7 0.121
70 0.934
71 0.917
72 0.933
73 0.0523
74 0.517
75 0.832
76 0.0955
77 0.0585
78 0.386
79 0.954
8 0.781
80 0.603
81 0.607
82 0.924
83 0.731
84 0.433
85 0.223
86 0.427
87 0.0288
88 0.452
89 0.684
9 0.737
90 0.597
91 0.349
92 0.278
93 0.921
94 0.0556
95 0.518
96 0.0238
97 0.0331
98 0.693
99 0.256



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11105


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000304 (mouse neonate N0 sample)
0011266 (mouse pancreas- neonate N00 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

FF:0000294 (mouse embryonic day 11 sample)