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FF:859-1F8

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Name:prostate, adult
Species:Mouse (Mus musculus)
Library ID:CNhs10470
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueprostate
dev stageadult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00004867
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10470 CAGE DRX009076 DRR009950
Accession ID Mm9

Library idBAMCTSS
CNhs10470 DRZ001375 DRZ002758
Accession ID Mm10

Library idBAMCTSS
CNhs10470 DRZ012725 DRZ014108
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sample
Ranked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sample
Ranked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10470

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.236
1001 -0.0275
1002 -0.102
1003 0.0617
1004 0
1005 0
1006 0
1007 -0.122
1008 0
1009 0.0293
101 -0.0488
1010 0
1011 0
1012 0
1013 0.767
1014 -0.0874
1015 -0.242
1016 -0.204
1017 0
1018 0.0865
1019 0
102 0
1020 0
1021 0
1022 0.444
1023 0
1024 -0.0325
1025 0
1026 0.0571
1027 0
1028 0
1029 -0.0282
103 -0.0735
1030 0
1031 -0.222
1032 0.0369
1033 0
1034 0.221
1035 0
1036 -0.134
1037 0.159
1038 -0.066
1039 0.0111
104 0
1040 0.0169
1041 0.221



Repeat families with enriched expression in this sample
Summary:Ranked list of repeat family expression in this sample relative to

the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA



link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs
Summary:Association of JASPAR motif to the promoter expression in this

sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10470
Jaspar motif P-value
MA0002.2 0.145
MA0003.1 0.463
MA0004.1 0.517
MA0006.1 0.279
MA0007.1 0.0682
MA0009.1 0.798
MA0014.1 0.0381
MA0017.1 0.0725
MA0018.2 0.183
MA0019.1 0.788
MA0024.1 5.8711e-11
MA0025.1 0.566
MA0027.1 0.593
MA0028.1 0.82
MA0029.1 0.265
MA0030.1 0.449
MA0031.1 8.60478e-5
MA0035.2 0.0881
MA0038.1 0.671
MA0039.2 0.0718
MA0040.1 0.473
MA0041.1 0.583
MA0042.1 0.812
MA0043.1 0.174
MA0046.1 7.47149e-4
MA0047.2 5.97569e-8
MA0048.1 0.324
MA0050.1 0.119
MA0051.1 0.0206
MA0052.1 0.931
MA0055.1 0.301
MA0057.1 0.171
MA0058.1 0.531
MA0059.1 0.611
MA0060.1 0.317
MA0061.1 0.0745
MA0062.2 0.863
MA0065.2 0.402
MA0066.1 0.589
MA0067.1 0.422
MA0068.1 0.184
MA0069.1 0.71
MA0070.1 0.294
MA0071.1 0.776
MA0072.1 0.724
MA0073.1 0.992
MA0074.1 0.772
MA0076.1 0.495
MA0077.1 0.419
MA0078.1 0.695
MA0079.2 0.277
MA0080.2 0.658
MA0081.1 0.151
MA0083.1 0.0238
MA0084.1 0.977
MA0087.1 0.348
MA0088.1 0.0559
MA0090.1 0.947
MA0091.1 0.194
MA0092.1 0.716
MA0093.1 0.62
MA0099.2 0.00811
MA0100.1 0.742
MA0101.1 0.0999
MA0102.2 0.497
MA0103.1 5.20546e-7
MA0104.2 0.681
MA0105.1 0.0103
MA0106.1 0.358
MA0107.1 0.102
MA0108.2 0.937
MA0111.1 0.202
MA0112.2 0.0139
MA0113.1 0.0982
MA0114.1 0.0407
MA0115.1 0.136
MA0116.1 0.78
MA0117.1 0.0711
MA0119.1 0.382
MA0122.1 0.777
MA0124.1 0.0325
MA0125.1 0.857
MA0131.1 0.476
MA0135.1 0.852
MA0136.1 0.129
MA0137.2 0.00428
MA0138.2 0.0357
MA0139.1 0.138
MA0140.1 0.693
MA0141.1 0.221
MA0142.1 0.432
MA0143.1 0.18
MA0144.1 9.48971e-7
MA0145.1 0.0942
MA0146.1 0.333
MA0147.1 0.73
MA0148.1 6.52316e-5
MA0149.1 0.0774
MA0150.1 0.00249
MA0152.1 0.645
MA0153.1 0.00103
MA0154.1 0.96
MA0155.1 0.566
MA0156.1 0.221
MA0157.1 4.00612e-4
MA0159.1 0.329
MA0160.1 0.626
MA0162.1 0.714
MA0163.1 0.402
MA0164.1 0.727
MA0258.1 0.135
MA0259.1 0.868



FANTOM5 phase1 novel unique motifs
Summary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in

169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon



link to dataset.
data

library id: CNhs10470
Novel motif P-value
1 0.316
10 0.661
100 0.765
101 0.646
102 0.222
103 0.109
104 0.574
105 0.905
106 0.0213
107 0.747
108 0.72
109 0.123
11 0.41
110 0.448
111 0.0195
112 0.148
113 0.498
114 0.338
115 0.507
116 0.654
117 0.887
118 0.0813
119 0.00402
12 0.377
120 0.596
121 0.321
122 0.858
123 0.727
124 0.0124
125 0.805
126 0.453
127 0.773
128 0.228
129 0.23
13 0.0835
130 0.395
131 0.473
132 0.15
133 0.958
134 0.834
135 0.272
136 0.311
137 0.768
138 0.145
139 0.387
14 0.882
140 0.184
141 0.608
142 0.758
143 0.603
144 0.335
145 0.173
146 0.0781
147 0.175
148 0.207
149 0.362
15 0.422
150 0.158
151 0.0757
152 0.0225
153 0.467
154 0.407
155 0.0988
156 0.0085
157 0.707
158 0.559
159 0.274
160 0.961
161 0.105
162 0.912
163 0.764
164 0.275
165 0.11
166 0.781
167 0.5
168 0.761
169 0.0768
17 0.0163
18 0.426
19 0.0595
2 0.267
20 0.327
21 0.112
22 0.153
23 0.37
24 0.015
25 0.6
26 0.132
27 0.254
28 0.73
29 0.138
3 0.812
30 0.55
31 0.461
32 0.223
33 0.945
34 0.167
35 0.494
36 0.358
37 0.0454
38 0.529
39 0.309
4 0.849
40 0.398
41 0.827
42 0.992
43 0.41
44 0.457
45 0.604
46 0.201
47 0.381
48 0.253
49 0.409
5 0.137
50 0.606
51 0.959
52 0.137
53 0.805
54 0.953
55 0.568
56 0.635
57 0.241
58 0.228
59 0.454
6 0.358
60 0.0911
61 0.869
62 0.418
63 0.157
64 0.854
65 0.307
66 0.962
67 0.177
68 0.0923
69 0.0635
7 0.568
70 0.00341
71 0.373
72 0.381
73 0.00929
74 0.337
75 0.447
76 0.131
77 0.273
78 0.64
79 0.722
8 0.919
80 0.96
81 0.736
82 0.0665
83 0.229
84 0.0647
85 0.0122
86 0.171
87 0.177
88 0.502
89 0.104
9 0.92
90 0.741
91 0.189
92 0.863
93 0.0326
94 0.955
95 0.648
96 0.0285
97 0.0146
98 0.513
99 0.839



de novo motifs identified by HOMER in promoters active in this sample
Summary:The result of HOMER in this sample is shown.
Analyst:NA

library id: CNhs10470


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)
Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji



link to source data

data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002367 (prostate gland)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011435 (mouse prostate- adult sample)

Ancestor terms (development)
Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship

Analyst: Hideya Kawaji

link to source data

data


UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)