Personal tools

Coexpression cluster:C2971: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 4: Line 4:
|gostat_on_coexpression_clusters=GO:0005730!nucleolus!1.09134518659741e-05!9221;1736;4691$GO:0031981!nuclear lumen!0.000340050982291448!9221;1736;4691$GO:0006364!rRNA processing!0.000340050982291448!9221;1736$GO:0016072!rRNA metabolic process!0.000340050982291448!9221;1736$GO:0031974!membrane-enclosed lumen!0.000376365868350794!9221;1736;4691$GO:0043233!organelle lumen!0.000376365868350794!9221;1736;4691$GO:0042254!ribosome biogenesis and assembly!0.000419565009273174!9221;1736$GO:0044428!nuclear part!0.000419565009273174!9221;1736;4691$GO:0022613!ribonucleoprotein complex biogenesis and assembly!0.00168049642567982!9221;1736$GO:0003720!telomerase activity!0.00342604853543545!1736$GO:0005697!telomerase holoenzyme complex!0.00389312236399137!1736$GO:0043232!intracellular non-membrane-bound organelle!0.00473375331587104!9221;1736;4691$GO:0043228!non-membrane-bound organelle!0.00473375331587104!9221;1736;4691$GO:0006396!RNA processing!0.00490394377798006!9221;1736$GO:0031119!tRNA pseudouridine synthesis!0.00570907239064743!1736$GO:0007004!telomere maintenance via telomerase!0.00909695917889302!1736$GO:0001522!pseudouridine synthesis!0.00916701121882851!1736$GO:0044446!intracellular organelle part!0.00916701121882851!9221;1736;4691$GO:0044422!organelle part!0.00916701121882851!9221;1736;4691$GO:0006400!tRNA modification!0.00941664197669587!1736$GO:0003723!RNA binding!0.0107915548678622!1736;4691$GO:0032200!telomere organization and biogenesis!0.0107915548678622!1736$GO:0000723!telomere maintenance!0.0107915548678622!1736$GO:0016439!tRNA-pseudouridine synthase activity!0.011766990608002!1736$GO:0009982!pseudouridine synthase activity!0.0126640690375726!1736$GO:0009451!RNA modification!0.014806363407018!1736$GO:0003964!RNA-directed DNA polymerase activity!0.0158398668910636!1736$GO:0006278!RNA-dependent DNA replication!0.0181666133021973!1736$GO:0005938!cell cortex!0.0181666133021973!4691$GO:0005634!nucleus!0.0181666133021973!9221;1736;4691$GO:0006996!organelle organization and biogenesis!0.0181666133021973!9221;1736$GO:0016866!intramolecular transferase activity!0.0181666133021973!1736$GO:0008022!protein C-terminus binding!0.0191670845322766!4691$GO:0008033!tRNA processing!0.0231162234769279!1736$GO:0001525!angiogenesis!0.0314525679379851!4691$GO:0048514!blood vessel morphogenesis!0.0348272231545753!4691$GO:0048646!anatomical structure formation!0.0352628088452944!4691$GO:0001568!blood vessel development!0.0362830862796039!4691$GO:0001944!vasculature development!0.0362830862796039!4691$GO:0043231!intracellular membrane-bound organelle!0.0414910712264059!9221;1736;4691$GO:0043227!membrane-bound organelle!0.0414910712264059!9221;1736;4691$GO:0006399!tRNA metabolic process!0.0441775786977901!1736$GO:0016779!nucleotidyltransferase activity!0.0453127893723849!1736$GO:0007067!mitosis!0.0462030726886151!9221$GO:0000087!M phase of mitotic cell cycle!0.0463022736324971!9221
|gostat_on_coexpression_clusters=GO:0005730!nucleolus!1.09134518659741e-05!9221;1736;4691$GO:0031981!nuclear lumen!0.000340050982291448!9221;1736;4691$GO:0006364!rRNA processing!0.000340050982291448!9221;1736$GO:0016072!rRNA metabolic process!0.000340050982291448!9221;1736$GO:0031974!membrane-enclosed lumen!0.000376365868350794!9221;1736;4691$GO:0043233!organelle lumen!0.000376365868350794!9221;1736;4691$GO:0042254!ribosome biogenesis and assembly!0.000419565009273174!9221;1736$GO:0044428!nuclear part!0.000419565009273174!9221;1736;4691$GO:0022613!ribonucleoprotein complex biogenesis and assembly!0.00168049642567982!9221;1736$GO:0003720!telomerase activity!0.00342604853543545!1736$GO:0005697!telomerase holoenzyme complex!0.00389312236399137!1736$GO:0043232!intracellular non-membrane-bound organelle!0.00473375331587104!9221;1736;4691$GO:0043228!non-membrane-bound organelle!0.00473375331587104!9221;1736;4691$GO:0006396!RNA processing!0.00490394377798006!9221;1736$GO:0031119!tRNA pseudouridine synthesis!0.00570907239064743!1736$GO:0007004!telomere maintenance via telomerase!0.00909695917889302!1736$GO:0001522!pseudouridine synthesis!0.00916701121882851!1736$GO:0044446!intracellular organelle part!0.00916701121882851!9221;1736;4691$GO:0044422!organelle part!0.00916701121882851!9221;1736;4691$GO:0006400!tRNA modification!0.00941664197669587!1736$GO:0003723!RNA binding!0.0107915548678622!1736;4691$GO:0032200!telomere organization and biogenesis!0.0107915548678622!1736$GO:0000723!telomere maintenance!0.0107915548678622!1736$GO:0016439!tRNA-pseudouridine synthase activity!0.011766990608002!1736$GO:0009982!pseudouridine synthase activity!0.0126640690375726!1736$GO:0009451!RNA modification!0.014806363407018!1736$GO:0003964!RNA-directed DNA polymerase activity!0.0158398668910636!1736$GO:0006278!RNA-dependent DNA replication!0.0181666133021973!1736$GO:0005938!cell cortex!0.0181666133021973!4691$GO:0005634!nucleus!0.0181666133021973!9221;1736;4691$GO:0006996!organelle organization and biogenesis!0.0181666133021973!9221;1736$GO:0016866!intramolecular transferase activity!0.0181666133021973!1736$GO:0008022!protein C-terminus binding!0.0191670845322766!4691$GO:0008033!tRNA processing!0.0231162234769279!1736$GO:0001525!angiogenesis!0.0314525679379851!4691$GO:0048514!blood vessel morphogenesis!0.0348272231545753!4691$GO:0048646!anatomical structure formation!0.0352628088452944!4691$GO:0001568!blood vessel development!0.0362830862796039!4691$GO:0001944!vasculature development!0.0362830862796039!4691$GO:0043231!intracellular membrane-bound organelle!0.0414910712264059!9221;1736;4691$GO:0043227!membrane-bound organelle!0.0414910712264059!9221;1736;4691$GO:0006399!tRNA metabolic process!0.0441775786977901!1736$GO:0016779!nucleotidyltransferase activity!0.0453127893723849!1736$GO:0007067!mitosis!0.0462030726886151!9221$GO:0000087!M phase of mitotic cell cycle!0.0463022736324971!9221
|id=C2971
|id=C2971
|ontology_enrichment_celltype=CL:0000066!1.80e-16!254;CL:0000548!4.37e-11!679;CL:0000004!4.37e-11!679;CL:0000255!4.37e-11!679;CL:0000012!6.42e-11!682;CL:0000076!1.02e-07!62;CL:0000063!1.34e-07!578
|ontology_enrichment_celltype=CL:0000066!4.34e-14!253
|ontology_enrichment_disease=DOID:162!3.21e-64!235;DOID:14566!3.03e-63!239;DOID:0050687!1.08e-33!143;DOID:0050686!1.70e-29!137;DOID:305!1.71e-28!106;DOID:2531!1.92e-23!51;DOID:0060083!1.92e-23!51;DOID:1240!3.39e-20!39;DOID:8692!1.33e-16!31
|ontology_enrichment_disease=DOID:162!1.13e-61!235;DOID:14566!7.55e-61!239;DOID:0050687!1.21e-33!143;DOID:0050686!3.40e-28!137;DOID:305!1.63e-27!106;DOID:2531!6.35e-22!51;DOID:0060083!6.35e-22!51;DOID:1240!1.02e-18!39;DOID:8692!3.87e-15!31;DOID:1749!7.64e-07!14;DOID:3095!8.40e-07!22;DOID:2994!8.40e-07!22
|ontology_enrichment_uberon=
|ontology_enrichment_uberon=
|tf_chipseq_enrich=ATF3#467;2:14.9754496840058:0.00576829454079388:0.0259401874589206!BCLAF1#9774;2:14.4350984067479:0.00620114743554613:0.027369379918903!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0323281206073145!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00435021296646786!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.032016279565356!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.045970192343527!FOSL2#2355;2:11.2868004030411:0.010053458697312:0.0376523407046032!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0127534254071906!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0185614057366467!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0292995245347137!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0268401965863137!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275241302089276!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0245288565606553!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0327702172413156
|tf_chipseq_enrich=ATF3#467;2:14.9754496840058:0.00576829454079388:0.0259401874589206!BCLAF1#9774;2:14.4350984067479:0.00620114743554613:0.027369379918903!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0323281206073145!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00435021296646786!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.032016279565356!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.045970192343527!FOSL2#2355;2:11.2868004030411:0.010053458697312:0.0376523407046032!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0127534254071906!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0185614057366467!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0292995245347137!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0268401965863137!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275241302089276!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0245288565606553!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0327702172413156
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.0226057,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.0244227,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.00995227,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.782949,0.635872,0.20128,0.823736,0.489965,0.335423,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.042539,0.248224,0.271958,0.292154,0.405773,0.0921263,0.581713,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.107929,0.376924,0.463191,0.647576,0.528324,0.520763,0.370782,0.415647,0.0297533,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.00679651,0.577664,0.291709,0.448095,0.576651,0.102333,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.513427,0.400457,0.275351,0.0304678,0.185661,0.346319,0.535598,0.270984,0.0772647,0.503058,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.421596,0.581837,0.412837,0.671377,0.546839,0.551561,0.120021,0.0258593,0.312808,0.333034,0.0451077,0.0747529,0.229003,0.650179,0.589326,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.807485,0.428671,0.228096,0.336314,0.19763,0.15631,0.20495,0.421464,0.141711,0.104399,0.516462,0.311758,0.335105,0.144809,0.145539,0.385517,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.048108,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.753577,0.206222,0.171685,0.651524,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.0198561,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.0627924,0.381386,0.0179103,0.0517437,0.279795,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.062811,0.19559,0.132201,0.188694,0.0481795,0.199971,0.016022,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.0694567,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.00501606,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.000584633,0.28711,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.131452,0.323837,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.389379,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.000919297,0.145116,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.00102818,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.0257725,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.034431,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.000104984,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.00340589,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.252227,0.0360851,0.0998546,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.18653,0.43956,0.37006,0.10748,0.120472,0.197484,0.396996,0.36145,0.406019,0.381071,0.216033,0.643768,0.432035,0.366326,0.0886602,0.0305485,0.50058,0.443185,0.522904,0.0608227,0.151996,0.227104,0.518585,0.617852,0.38649,0.284625,0.156746,0.192225,0.729153,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.191695,0.390974,0.382874,0.319063,0.161598,0.405056,0.644754,0.496032,0.21803,0.37357,0.0704414,0.477353,0.199161,0.399222,0.0629574,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.0851996,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.446891,0.24884,0.0978616,0.516511,0.322213,0.656109,0.33942,0.243065,0.387276,0.522605,0.0248202,0.180745,0.222037,0.416621,0.416292,0.462712,0.734551,0.579431,0.204817,0.452428,0.138871,0.103502,0.166905,0.19783,0.0833851,0.316453,0.140384,0.175199,0.332919,0.373557,0.170369,0.0980968,0.365487,0.534741,0.0889149,0.363192,0.236011,0.203486,0.273398,0.375787,0.119167,0.351067,0.275347,0.269604,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.235208,0.307334,0.459728,0.283463,0.0517073,0.135386,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.173874,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.0139948,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.0335483,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.0532009,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.0541163,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.0377035,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.0133429,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.0226057,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.0175714,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.0244227,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.005305,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.00995227,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.782949,0.635872,0.20128,0.823736,0.489965,0.335423,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.042539,0.248224,0.271958,0.292154,0.405773,0.0921263,0.581713,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.107929,0.376924,0.463191,0.647576,0.528324,0.520763,0.370782,0.415647,0.0297533,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.00679651,0.577664,0.291709,0.448095,0.576651,0.102333,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.513427,0.400457,0.275351,0.0304678,0.185661,0.346319,0.535598,0.270984,0.0772647,0.503058,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.421596,0.581837,0.412837,0.671377,0.546839,0.551561,0.120021,0.0258593,0.312808,0.333034,0.0451077,0.0747529,0.229003,0.650179,0.589326,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.807485,0.428671,0.228096,0.336314,0.19763,0.15631,0.20495,0.421464,0.141711,0.104399,0.516462,0.311758,0.335105,0.144809,0.145539,0.385517,0.0818086,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.048108,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.753577,0.206222,0.171685,0.651524,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.0198561,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.00427764,0.0627924,0.381386,0.0179103,0.0517437,0.279795,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.062811,0.19559,0.132201,0.188694,0.0481795,0.199971,0.016022,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.0694567,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.00501606,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.000584633,0.28711,0.0473033,0.094881,0.118532,0.132886,0.0774373,0.109194,0.128564,0.131452,0.323837,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.389379,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.000919297,0.145116,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.00102818,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.0257725,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.034431,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.000104984,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.00340589,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.252227,0.0360851,0.0998546,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.18653,0.43956,0.37006,0.10748,0.120472,0.197484,0.396996,0.36145,0.406019,0.381071,0.216033,0.643768,0.432035,0.366326,0.0886602,0.0305485,0.50058,0.443185,0.522904,0.0608227,0.151996,0.227104,0.518585,0.617852,0.38649,0.284625,0.156746,0.192225,0.729153,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.191695,0.390974,0.382874,0.319063,0.161598,0.405056,0.644754,0.496032,0.21803,0.37357,0.0704414,0.477353,0.199161,0.399222,0.0629574,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.0851996,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.446891,0.24884,0.0978616,0.516511,0.322213,0.656109,0.33942,0.243065,0.387276,0.522605,0.0248202,0.180745,0.222037,0.416621,0.416292,0.462712,0.734551,0.579431,0.204817,0.452428,0.138871,0.103502,0.166905,0.19783,0.0833851,0.316453,0.140384,0.175199,0.332919,0.373557,0.170369,0.0980968,0.365487,0.534741,0.0889149,0.363192,0.236011,0.203486,0.273398,0.375787,0.119167,0.351067,0.275347,0.269604,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.463751,0.235208,0.307334,0.459728,0.283463,0.0517073,0.135386,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.173874,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.0139948,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.0828367,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.0335483,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.0532009,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.0541163,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.0377035,0.211332,0.187731,0.233626,0.0192232,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.0497481,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.0133429,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435
}}
}}

Revision as of 14:39, 19 October 2012


Full id: C2971_Mast_rhabdomyosarcoma_osteosarcoma_hepatoblastoma_malignant_acute_hepatocellular



Phase1 CAGE Peaks

Hg19::chr10:103912137..103912159,+p1@NOLC1
Hg19::chr2:232329186..232329215,-p1@NCL
Hg19::chrX:153991175..153991226,+p2@DKC1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005730nucleolus1.09134518659741e-05
GO:0031981nuclear lumen0.000340050982291448
GO:0006364rRNA processing0.000340050982291448
GO:0016072rRNA metabolic process0.000340050982291448
GO:0031974membrane-enclosed lumen0.000376365868350794
GO:0043233organelle lumen0.000376365868350794
GO:0042254ribosome biogenesis and assembly0.000419565009273174
GO:0044428nuclear part0.000419565009273174
GO:0022613ribonucleoprotein complex biogenesis and assembly0.00168049642567982
GO:0003720telomerase activity0.00342604853543545
GO:0005697telomerase holoenzyme complex0.00389312236399137
GO:0043232intracellular non-membrane-bound organelle0.00473375331587104
GO:0043228non-membrane-bound organelle0.00473375331587104
GO:0006396RNA processing0.00490394377798006
GO:0031119tRNA pseudouridine synthesis0.00570907239064743
GO:0007004telomere maintenance via telomerase0.00909695917889302
GO:0001522pseudouridine synthesis0.00916701121882851
GO:0044446intracellular organelle part0.00916701121882851
GO:0044422organelle part0.00916701121882851
GO:0006400tRNA modification0.00941664197669587
GO:0003723RNA binding0.0107915548678622
GO:0032200telomere organization and biogenesis0.0107915548678622
GO:0000723telomere maintenance0.0107915548678622
GO:0016439tRNA-pseudouridine synthase activity0.011766990608002
GO:0009982pseudouridine synthase activity0.0126640690375726
GO:0009451RNA modification0.014806363407018
GO:0003964RNA-directed DNA polymerase activity0.0158398668910636
GO:0006278RNA-dependent DNA replication0.0181666133021973
GO:0005938cell cortex0.0181666133021973
GO:0005634nucleus0.0181666133021973
GO:0006996organelle organization and biogenesis0.0181666133021973
GO:0016866intramolecular transferase activity0.0181666133021973
GO:0008022protein C-terminus binding0.0191670845322766
GO:0008033tRNA processing0.0231162234769279
GO:0001525angiogenesis0.0314525679379851
GO:0048514blood vessel morphogenesis0.0348272231545753
GO:0048646anatomical structure formation0.0352628088452944
GO:0001568blood vessel development0.0362830862796039
GO:0001944vasculature development0.0362830862796039
GO:0043231intracellular membrane-bound organelle0.0414910712264059
GO:0043227membrane-bound organelle0.0414910712264059
GO:0006399tRNA metabolic process0.0441775786977901
GO:0016779nucleotidyltransferase activity0.0453127893723849
GO:0007067mitosis0.0462030726886151
GO:0000087M phase of mitotic cell cycle0.0463022736324971



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br>disease_data<br>


Cell Type
Ontology termp-valuen
epithelial cell4.34e-14253
Disease
Ontology termp-valuen
cancer1.13e-61235
disease of cellular proliferation7.55e-61239
cell type cancer1.21e-33143
organ system cancer3.40e-28137
carcinoma1.63e-27106
hematologic cancer6.35e-2251
immune system cancer6.35e-2251
leukemia1.02e-1839
myeloid leukemia3.87e-1531
squamous cell carcinoma7.64e-0714
germ cell and embryonal cancer8.40e-0722
germ cell cancer8.40e-0722


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
ATF3#467214.97544968400580.005768294540793880.0259401874589206
BCLAF1#9774214.43509840674790.006201147435546130.027369379918903
E2F1#186934.907389214879320.008460985347239390.0323281206073145
E2F4#1874312.66806031528440.0004917987006298980.00435021296646786
E2F6#187635.017155731697390.00791769806886330.032016279565356
ELF1#199734.258097958807540.01295179875054610.045970192343527
FOSL2#2355211.28680040304110.0100534586973120.0376523407046032
IRF1#365937.63716375356390.002244692747297240.0127534254071906
MAX#414936.452555509007120.003721913834265510.0185614057366467
MYC#460935.22228187160940.007020843755740150.0292995245347137
NFKB1#479035.488063424193840.006049381815655430.0268401965863137
SIN3A#2594235.408884726815140.006318961977991520.0275241302089276
SP1#666735.69838137814090.005403962701712170.0245288565606553
YY1#752834.911170749853860.008441455341808260.0327702172413156



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.