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(Created page with "{{f5samples |id=FF:10706-109H4 |name=pleomorphic hepatocellular carcinoma cell line:SNU-387, biol_rep1 |sample_id=10706 |rna_tube_id=109H4 |rna_box=109 |rna_position=H4 ...")
 
 
(29 intermediate revisions by the same user not shown)
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{{f5samples
 
{{f5samples
|id=FF:10706-109H4
+
|DRA_sample_Accession=CAGE@SAMD00005502
|name=pleomorphic hepatocellular carcinoma cell line:SNU-387, biol_rep1
+
|accession_numbers=CAGE;DRX007986;DRR008858;DRZ000283;DRZ001668;DRZ011633;DRZ013018
|sample_id=10706
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|rna_tube_id=109H4
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|rna_box=109
+
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:5662
|rna_position=H4
+
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0103191
|sample_cell_lot=
+
|comment=
|sample_cell_catalog=CRL-2237
+
|created_by=
|sample_company=ATCC
+
|creation_date=
|rna_lot_number=
+
|data_phase=2
|rna_catalog_number=
+
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
+
|def=
|sample_strain=
+
|expression_enrichment_score=chr3:189349162..189349207,+!p2@TP63!1.76!56.93!TP63;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!32.93!ZBED1;;chr6:45296048..45296082,+!p1@RUNX2!1.45!31.21!RUNX2;;chr20:30433396..30433414,-!p1@FOXS1!1.30!18.86!FOXS1;;chrX:66763856..66763896,+!p1@AR!1.23!22.98!AR;;chr20:42543441..42543497,+!p1@TOX2!1.22!69.11!TOX2;;chr1:151804244..151804310,-!p1@RORC!1.21!15.09!RORC;;chr3:21792585..21792625,-!p2@ZNF385D!1.20!16.46!ZNF385D;;chr3:114343768..114343822,-!p1@ZBTB20!1.18!61.22!ZBTB20;;chr3:189348969..189349018,+!p4@TP63!1.16!13.38!TP63;;chr17:70117153..70117174,+!p1@SOX9!1.14!132.05!SOX9;;chr1:119530493..119530572,-!p1@TBX15!1.14!12.86!TBX15;;chr20:42543506..42543549,+!p2@TOX2!1.12!29.67!TOX2;;chr3:141087339..141087387,+!p2@ZBTB38!1.10!117.81!ZBTB38;;chr4:111558135..111558198,-!p2@PITX2!1.10!11.66!PITX2;;chr5:134369905..134369972,-!p1@PITX1!1.08!17.15!PITX1;;chr12:66218598..66218645,+!p2@HMGA2!1.07!50.59!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!1.05!27.10!NCOA7;;chr2:176969228..176969260,+!p1@HOXD11!1.05!10.12!HOXD11;;chr12:66218836..66218888,+!p1@HMGA2!1.03!91.57!HMGA2;;chr9:14180778..14180808,-!p15@NFIB!1.03!9.77!NFIB;;chr3:193853927..193853944,+!p1@HES1!1.02!313.82!HES1;;chr3:114343826..114343869,-!p4@ZBTB20!1.01!18.86!ZBTB20;;chr12:26277817..26277863,-!p2@BHLHE41!1.01!12.52!BHLHE41;;chr3:21792682..21792720,-!p1@ZNF385D!1.00!8.92!ZNF385D;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.26!EBF1;;chr19:45971246..45971265,+!p1@FOSB!0.96!157.25!FOSB;;chr3:141087393..141087426,+!p3@ZBTB38!0.96!33.27!ZBTB38;;chr20:50179368..50179392,-!p2@NFATC2!0.96!10.63!NFATC2;;chr7:14028488..14028516,-!p2@ETV1!0.96!8.92!ETV1;;chr14:75745523..75745537,+!p1@FOS!0.94!965.48!FOS;;chr1:158969752..158969780,+!p6@IFI16!0.94!13.55!IFI16;;chr6:28321971..28321995,-!p1@ZNF323!0.94!7.72!ZNF323;;chr12:26277956..26277980,-!p1@BHLHE41!0.92!27.61!BHLHE41;;chr17:38256799..38256815,-!p3@NR1D1!0.92!13.72!NR1D1;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.52!TFAP2A;;chr3:157823517..157823562,-!p1@SHOX2!0.91!7.72!SHOX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.90!35.67!NFE2L3;;chr7:17338266..17338282,+!p1@AHR!0.89!77.34!AHR;;chr2:178128149..178128198,-!p2@NFE2L2!0.89!38.41!NFE2L2;;chr12:66218255..66218304,+!p3@HMGA2!0.89!19.04!HMGA2;;chr5:124082322..124082364,-!p1@ZNF608!0.89!18.01!ZNF608;;chr3:5021268..5021282,+!p4@BHLHE40!0.89!14.40!BHLHE40;;chr17:38256822..38256851,-!p1@NR1D1!0.88!54.88!NR1D1;;chr8:116681409..116681431,-!p2@TRPS1!0.88!19.04!TRPS1;;chrX:66763815..66763854,+!p2@AR!0.87!8.57!AR;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.40!NCOR2;;chr10:63809013..63809041,+!p3@ARID5B!0.86!36.36!ARID5B;;chr7:14029283..14029311,-!p1@ETV1!0.86!35.16!ETV1;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.16!FOXP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.83!31.90!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!0.83!7.37!FOXF1;;chr12:77459306..77459365,-!p1@E2F7!0.82!74.94!E2F7;;chr19:13134772..13134822,+!p2@NFIX!0.82!8.40!NFIX;;chr9:16728327..16728338,-!p5@BNC2!0.82!5.66!BNC2;;chr6:35310395..35310410,+!p2@PPARD!0.81!22.64!PPARD;;chr5:124084493..124084524,-!p2@ZNF608!0.80!12.69!ZNF608;;chr9:16728161..16728185,-!p4@BNC2!0.80!5.32!BNC2;;chr15:80843484..80843499,+!p5@ARNT2!0.80!5.32!ARNT2;;chr2:101436564..101436647,+!p1@NPAS2!0.79!114.55!NPAS2;;chr3:5021191..5021202,+!p3@BHLHE40!0.79!14.75!BHLHE40;;chr17:17726907..17726958,-!p2@SREBF1!0.78!34.13!SREBF1;;chr9:16705069..16705086,-!p3@BNC2!0.78!4.97!BNC2;;chr8:11561684..11561751,+!p1@GATA4!0.78!4.97!GATA4;;chr11:66886717..66886762,+!p1@KDM2A!0.76!108.55!KDM2A;;chr14:62162258..62162269,+!p2@HIF1A!0.76!50.59!HIF1A;;chr21:47063625..47063658,+!p1@PCBP3!0.76!22.64!PCBP3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.12!ETV4;;chr17:53342311..53342400,+!p1@HLF!0.76!5.49!HLF;;chr6:10412392..10412409,-!p4@TFAP2A!0.76!5.49!TFAP2A;;chr3:21792631..21792665,-!p3@ZNF385D!0.76!4.80!ZNF385D;;chr2:46524897..46524911,+!p2@EPAS1!0.75!13.89!EPAS1;;chr2:231090433..231090469,+!p1@SP140!0.75!4.63!SP140;;chr16:67198683..67198698,+!p2@HSF4!0.75!4.63!HSF4;;chr1:158979686..158979745,+!p1@IFI16!0.74!166.69!IFI16;;chr6:168227552..168227609,+!p1@MLLT4!0.74!40.99!MLLT4;;chr6:45390025..45390076,+!p2@RUNX2!0.74!11.66!RUNX2;;chr2:157189180..157189290,-!p1@NR4A2!0.73!25.04!NR4A2;;chr16:79633894..79633954,-!p3@MAF!0.73!8.92!MAF;;chr6:126240442..126240459,+!p4@NCOA7!0.73!5.83!NCOA7;;chr16:79634624..79634642,-!p1@MAF!0.72!18.52!MAF;;chr12:66218212..66218244,+!p5@HMGA2!0.72!6.52!HMGA2;;chr12:26277929..26277955,-!p3@BHLHE41!0.72!6.35!BHLHE41;;chr5:176738887..176738934,-!p1@MXD3!0.71!31.04!MXD3;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.18!HIF1A;;chr17:56065729..56065781,-!p2@VEZF1!0.71!19.89!VEZF1;;chr3:114866084..114866118,-!p2@ZBTB20!0.71!16.81!ZBTB20;;chr9:14314522..14314556,-!p3@NFIB!0.71!10.46!NFIB;;chr8:116681194..116681214,-!p1@TRPS1!0.70!42.87!TRPS1;;chr1:158979872..158979898,+!p3@IFI16!0.70!13.72!IFI16;;chr6:45389835..45389861,+!p7@RUNX2!0.70!6.86!RUNX2;;chr1:41827095..41827155,+!p1@FOXO6!0.70!5.66!FOXO6;;chr1:8938709..8938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|sample_dev_stage=
+
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|sample_tissue=liver
 
|sample_donor(cell lot)=
 
|sample_sex=female
 
|sample_age=41
 
|sample_ethnicity=K
 
|rna_rin=
 
|rna_od260/230=1.51000
 
|rna_od260/280=2.02000
 
|sample_cell_type=hepatocyte
 
|sample_cell_line=SNU-387
 
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 
|sample_experimental_condition=
 
|sample_disease=pleomorphic hepatocellular carcinoma
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=8.85546
 
|rna_concentration=0.32798
 
|sample_note=
 
|profile_hcage=CNhs11933,LSID835,release010,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
 
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
 
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:5662,DOID:7
 
|sample_description=
 
 
 
 
|fonse_cell_line=FF:0100224,FF:0101120
 
|fonse_cell_line=FF:0100224,FF:0101120
 
|fonse_cell_line_closure=FF:0100224,FF:0101120
 
|fonse_cell_line_closure=FF:0100224,FF:0101120
Line 67: Line 40:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 +
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pleomorphic%2520hepatocellular%2520carcinoma%2520cell%2520line%253aSNU-387.CNhs11933.10706-109H4.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:10706-109H4
 +
|is_a=DOID:5662;;EFO:0002091;;FF:0000210;;FF:0103191
 +
|is_obsolete=
 +
|library_id=CNhs11933
 +
|library_id_phase_based=2:CNhs11933
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10706
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10706
 +
|name=pleomorphic hepatocellular carcinoma cell line:SNU-387
 +
|namespace=FANTOM5
 +
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs11933,LSID835,release010,COMPLETED
 +
|profile_rnaseq=
 +
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.348796296324619,0,-0.0701707208170792,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0252547526784578,0,0,0,0,0,-0.0979578962680575,0,0,-0.0642187419690681,0,0,0,0,0,0,0,0,0,0,0.81208515642306,0,0.091762401360886,0,0.226845215581169,0,0,0,0,0,0,0.0398191077221506,0,0,0,0,0,0.00992067517289969,0.12806825766997,-0.0969923612426051,0,0,0.129501588368072,0.0687378478097941,0,0,0,0,0,0,0,0.0687378478097941,0,0.0687378478097941,0,0,0.0687378478097941,0,0,0,0.104030085645903,0.034368923904897,0,0,0,0,0.0125307031814131,0.0588100532081869,0,0,0,-0.0331500766521935,-0.176828478790971,0,0,0,0.18025896238923,0.0300329064322634,-0.104108276895998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0911749667365315,0.0687378478097941,0,0,0,0.0756088671108831,0,0,0,0,0,0
 +
|repeat_enrich_byname=0,0.0687378478097941,0.0687378478097941,0,0.0300329064322634,0,0.18025896238923,0.0687378478097941,0,0,0,0,0,0,0,0,0.399201340435846,0,-0.098989097434023,-0.0747772947136777,0,0,0.244569801389243,0,0.18025896238923,0,0,0,0,0,0,0,0.098725348628604,0,0.176432663991854,0,0,0.0762496409871168,0,0.0341538372766382,-0.305472230898407,0,-0.0030056575315123,0.200570543806917,0,0,0,0,-0.0456537856975669,0,-0.120879483793741,0.186194636560868,0.735513562961581,0.265994563937516,0.0723557608887879,0,0,0,-0.583075706782727,0.0208886134944002,0,0,-0.087410927846977,-0.033558086865178,0,0,-0.322306733741841,0.12806825766997,0.0797395052986525,0.0600348395674241,0,-0.0245953999025894,0,0,0,0,0,0.0687378478097941,0,0,0,0,0,-0.0231245429165396,0.461507867007685,0,0,0,-0.0352216709043685,0.198450506025036,0,0.099074900624648,0.415210307730087,0.0684304344567104,0,0.304933137105723,0,-0.302389727009913,0.0246022883427231,0.431372036563115,-0.154847550494415,-0.147401849371139,-0.189981719549847,0.00129212712730731,-0.0187529693105944,0.025812527309048,0.122639334540417,-0.270305784537721,0.0300835447713411,0.18418659437739,-0.331777896186027,0,0,0,0.0905914527766047,0,0,0.10264990401897,0.0068852616693804,0.308466591541683,0.0304368583234275,0.0719513496992295,-0.25681738005176,-0.0395325284566706,0.00291526376377221,0.0443853355695329,0.597215510189292,0,0,0.0687378478097941,0.022721636793455,0.217930182117191,0.121262118566289,0,0.00143958411419087,0.000393586732425927,0.034368923904897,-0.183042380834169,-0.208843416761609,0,0.0505004082917976,0.255681134674327,0.375097121317985,0,0.0623471916414449,0,0,0.127825163222547,0.154606014443832,-0.0525965991663151,0,0.00111177982590082,0,0.0341517498415642,0,0.0700013748600469,0.191542256298151,0,-0.0168330284900695,0,0.061792504849706,-0.0852801664721532,0.0733288296799945,-0.353656957581943,-0.0584468268118252,0.058024529910923,0.433432732813128,-0.0331500766521935,0.426801326161506,0,0.834805315329337,0,0.642571141159338,0.0294079745605667,0.00732487909768098,0.188028985315223,0.0180618232032034,0.42788628963857,0,-0.0245171755757934,0,-0.419614414006504,-0.165336630155255,-0.370551526770892,-0.157033149693703,0,0.0508063661964555,0.374659002730583,0.0324674656884172,0,0,0,0.224730037983346,0.459944053241909,0.0362295823681378,0.401510523974478,0,0.141655918223974,0,0,0.140086900924837,0.16993727766053,0,0.360919598067341,0.214212903731517,0.11900971704699,0.152943731449351,0.12806825766997,0,0.07752542024956,0,0,-0.379082848236862,0,-0.046469738459179,-0.073067379097526,0,-0.0102197567143736,0,0,-0.0494595082952058,0.0687378478097941,0.0907192850480675,0,0,-0.185847167763839,0,0,0,0.0687378478097941,0.0074409671546953,0,0,0,0,0,0,0,0.435825719911563,0.0789173230448502,0,-0.189003218797338,0,0,0,0,0.0687378478097941,0,0,0,0.00894430489860865,0,0.0572415467128094,0,0,0,0,-0.215723402553475,0.104030085645903,0,-0.0631248586878376,0,0.113422607790584,0,0,0.140704225791957,0,0,0,0,0.0703378006163058,0.0769700118384435,0,0,0.034368923904897,-0.27695440160179,0,0,0,0.00483653542228355,0.0225462750625776,0,0,0.241204404758244,0,0.155449123015347,-0.0815818795468414,0,0.127692955936495,-0.184068811277,0.835681127881262,0,0,-0.261347131789888,0,0,0.131935186167986,0.0543856329001791,0.0687378478097941,0,0,0,0,0,0,0,0.0125307031814131,0.090129481194615,0,0,0,0,0.0687378478097941,0,0,0,0,0,-0.129422397239414,-0.0234862088487163,0.18025896238923,0,0,0,0,0.0687378478097941,0,0.0660234581157115,-0.178680593021254,0,0,0.0667400788006772,0,0,0.0687378478097941,0,0,-0.0110742230028751,0,0,0.0687378478097941,0,0,-0.0969923612426051,0,0.0687378478097941,0,0,-0.564807121153884,0,0,0.0299045155471131,0,0,0,0,0,0,0.0687378478097941,0,0,0,0,0,0,0.00474917163452211,-0.0701707208170792,0,0,0,0,0,0,0,-0.146765040536121,0,0,0,0,-0.113884373708977,0,0,0,0.426788810539164,0,0.348796296324619,0,0.0687378478097941,0,0,0,0.172955397510698,0.034368923904897,0.034368923904897,0,0,0,0.034368923904897,0,0,0,0,0,0.034368923904897,0,0,0,0.893854362542024,0,0.158932627801261,0,0,0,0.179079556339414,0,0,0,0,0,0,0.058789057166088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0687378478097941,0,0,0,0,0,0,0.182999989239592,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.023294961990732,0,0,0,0.028358247456977,0,0,0.041849885842436,0.186962137315581,0.0589900851922529,0,0,0,0.0590370353081295,0,0,0.0357027604906154,0.12806825766997,0.464807807909419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0252547526784578,0,0,0,0,0,0,0,0,0,0,0,0,0.153633323870314,0,0,0,0,0,0,0.034368923904897,0,0,0,0,0,0.12806825766997,0,0.0687378478097941,0.034368923904897,0,0,0,0,0,0,0.100446039166726,0.0687378478097941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.718649846956587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.592764618495744,0,0,0,0,0,0,0,0,0,0,0,0.079988178974777,0,0,0,0,0,0,0,0,0.81208515642306,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0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 +
|rna_box=109
 +
|rna_catalog_number=
 +
|rna_concentration=0.32798
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=1.51
 +
|rna_od260/280=2.02
 +
|rna_position=H4
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=109H4
 +
|rna_weight_ug=8.85546
 +
|sample_age=41
 +
|sample_category=cell lines
 +
|sample_cell_catalog=CRL-2237
 +
|sample_cell_line=SNU-387
 +
|sample_cell_lot=
 +
|sample_cell_type=hepatocyte
 +
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
 +
|sample_company=ATCC
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=pleomorphic hepatocellular carcinoma
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=K
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.1558894950431e-212!GO:0005737;cytoplasm;3.90639351051147e-171!GO:0043227;membrane-bound organelle;1.19525976680642e-168!GO:0043231;intracellular membrane-bound organelle;1.23228723677887e-168!GO:0043226;organelle;4.0978080315141e-168!GO:0043229;intracellular organelle;2.07603967738048e-167!GO:0044422;organelle part;1.07174395759209e-130!GO:0044446;intracellular organelle part;7.34998044494561e-129!GO:0044444;cytoplasmic part;1.30692380910216e-117!GO:0032991;macromolecular complex;5.51807879499117e-88!GO:0005515;protein binding;6.26204590978125e-79!GO:0044238;primary metabolic process;8.617792934363e-72!GO:0044237;cellular metabolic process;9.41135110090175e-70!GO:0043170;macromolecule metabolic process;5.22029715825054e-69!GO:0005634;nucleus;9.05098359064342e-68!GO:0030529;ribonucleoprotein complex;5.22351278416856e-66!GO:0044428;nuclear part;1.59327756250323e-63!GO:0043233;organelle lumen;1.65756740252e-60!GO:0031974;membrane-enclosed lumen;1.65756740252e-60!GO:0003723;RNA binding;7.96028884596764e-59!GO:0016043;cellular component organization and biogenesis;4.97700832278667e-52!GO:0005739;mitochondrion;1.0259717280385e-47!GO:0043234;protein complex;2.26506029165546e-47!GO:0019538;protein metabolic process;2.65456779471516e-47!GO:0031090;organelle membrane;5.65911673386855e-46!GO:0033036;macromolecule localization;1.09962564359394e-45!GO:0015031;protein transport;1.11346963033731e-44!GO:0045184;establishment of protein localization;3.34232763538346e-42!GO:0008104;protein localization;1.12417027623203e-41!GO:0044260;cellular macromolecule metabolic process;7.89817010845548e-41!GO:0006412;translation;3.40207431991421e-40!GO:0044267;cellular protein metabolic process;4.34787347387699e-40!GO:0046907;intracellular transport;1.46732138364975e-38!GO:0005840;ribosome;6.41334414236111e-38!GO:0031981;nuclear lumen;8.60745239571692e-38!GO:0043283;biopolymer metabolic process;1.11629546136738e-37!GO:0006396;RNA processing;3.65973317100162e-37!GO:0016071;mRNA metabolic process;1.40468542725454e-35!GO:0005829;cytosol;3.89095455173596e-35!GO:0031967;organelle envelope;6.17769339609067e-35!GO:0031975;envelope;1.41739402366306e-34!GO:0003735;structural constituent of ribosome;2.13222086859125e-33!GO:0044429;mitochondrial part;2.62345616114521e-33!GO:0008380;RNA splicing;4.032365089005e-33!GO:0065003;macromolecular complex assembly;1.80482087851312e-31!GO:0006996;organelle organization and biogenesis;1.88824384163629e-31!GO:0006397;mRNA processing;3.08733264040108e-31!GO:0009058;biosynthetic process;3.81023119215419e-31!GO:0009059;macromolecule biosynthetic process;1.78200641939489e-30!GO:0043228;non-membrane-bound organelle;2.41079332341847e-30!GO:0043232;intracellular non-membrane-bound organelle;2.41079332341847e-30!GO:0006886;intracellular protein transport;5.98301363949754e-30!GO:0006259;DNA metabolic process;9.42391182536319e-30!GO:0044249;cellular biosynthetic process;2.74092856566533e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.74945427832963e-29!GO:0010467;gene expression;7.67423421771294e-29!GO:0033279;ribosomal subunit;3.81850628519188e-28!GO:0022607;cellular component assembly;6.70854465649834e-28!GO:0005654;nucleoplasm;5.95064982102964e-26!GO:0051649;establishment of cellular localization;1.5662278469108e-25!GO:0051641;cellular localization;2.11411564052803e-25!GO:0007049;cell cycle;3.76462496389806e-25!GO:0005681;spliceosome;1.01052523568028e-22!GO:0005740;mitochondrial envelope;2.8629941627609e-22!GO:0000166;nucleotide binding;2.93975343016273e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.15165699481175e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.44447132005329e-21!GO:0012505;endomembrane system;2.49679848494266e-21!GO:0044451;nucleoplasm part;3.87501551674284e-21!GO:0019866;organelle inner membrane;4.09724610456288e-21!GO:0031966;mitochondrial membrane;4.10214840410493e-21!GO:0017111;nucleoside-triphosphatase activity;7.34587317730371e-21!GO:0016462;pyrophosphatase activity;1.12339218381494e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.38322425414026e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.90354289139694e-20!GO:0008134;transcription factor binding;3.94115393683463e-20!GO:0005783;endoplasmic reticulum;8.15040787646705e-20!GO:0005743;mitochondrial inner membrane;6.11549381738973e-19!GO:0006457;protein folding;1.66838199774416e-18!GO:0006119;oxidative phosphorylation;3.45849149526138e-18!GO:0000278;mitotic cell cycle;5.26236969413186e-18!GO:0048770;pigment granule;8.30170413515274e-18!GO:0042470;melanosome;8.30170413515274e-18!GO:0022402;cell cycle process;1.09013196165189e-17!GO:0044445;cytosolic part;2.12448310420883e-17!GO:0022618;protein-RNA complex assembly;4.38493370333045e-17!GO:0006974;response to DNA damage stimulus;6.74228554130274e-17!GO:0006512;ubiquitin cycle;3.01125004341027e-16!GO:0044265;cellular macromolecule catabolic process;3.59164437781705e-16!GO:0003676;nucleic acid binding;5.15817199665842e-16!GO:0044432;endoplasmic reticulum part;9.25103312474963e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.10607348635634e-15!GO:0005794;Golgi apparatus;1.28315395848537e-15!GO:0044455;mitochondrial membrane part;1.8903394578311e-15!GO:0019941;modification-dependent protein catabolic process;2.39101528773115e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.39101528773115e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.39335862113367e-15!GO:0032553;ribonucleotide binding;2.41851785833554e-15!GO:0032555;purine ribonucleotide binding;2.41851785833554e-15!GO:0044257;cellular protein catabolic process;3.0642607935e-15!GO:0016874;ligase activity;4.07009924413149e-15!GO:0017076;purine nucleotide binding;4.22387233068891e-15!GO:0005694;chromosome;5.84141931796789e-15!GO:0043285;biopolymer catabolic process;1.26375006291187e-14!GO:0015934;large ribosomal subunit;1.26375006291187e-14!GO:0015935;small ribosomal subunit;2.16704998560353e-14!GO:0008135;translation factor activity, nucleic acid binding;3.27259823304185e-14!GO:0006605;protein targeting;3.54050555903195e-14!GO:0048193;Golgi vesicle transport;3.83867715994258e-14!GO:0012501;programmed cell death;4.35168448119218e-14!GO:0000087;M phase of mitotic cell cycle;5.05875304642828e-14!GO:0000502;proteasome complex (sensu Eukaryota);8.13073321272306e-14!GO:0006915;apoptosis;8.13073321272306e-14!GO:0007067;mitosis;9.04421823093556e-14!GO:0009057;macromolecule catabolic process;9.63027604311225e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.01180583077314e-13!GO:0016192;vesicle-mediated transport;1.12572667409674e-13!GO:0006281;DNA repair;1.37489639638668e-13!GO:0005635;nuclear envelope;1.54548683324669e-13!GO:0022403;cell cycle phase;1.63219226803028e-13!GO:0044427;chromosomal part;1.99510950210388e-13!GO:0043412;biopolymer modification;2.46175189668212e-13!GO:0051301;cell division;2.59078864034958e-13!GO:0031980;mitochondrial lumen;3.21169434403474e-13!GO:0005759;mitochondrial matrix;3.21169434403474e-13!GO:0051276;chromosome organization and biogenesis;4.18044084315527e-13!GO:0044248;cellular catabolic process;4.19856594107437e-13!GO:0051082;unfolded protein binding;4.88249096490279e-13!GO:0005746;mitochondrial respiratory chain;5.7959351680451e-13!GO:0008219;cell death;6.81458222111741e-13!GO:0016265;death;6.81458222111741e-13!GO:0030163;protein catabolic process;8.38402284857075e-13!GO:0005793;ER-Golgi intermediate compartment;1.18162882651401e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.18221154599399e-12!GO:0003954;NADH dehydrogenase activity;1.18221154599399e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.18221154599399e-12!GO:0003712;transcription cofactor activity;2.02849868651283e-12!GO:0005524;ATP binding;2.47035434977306e-12!GO:0006913;nucleocytoplasmic transport;3.7092251210571e-12!GO:0009719;response to endogenous stimulus;4.24484937546865e-12!GO:0016070;RNA metabolic process;5.06124878330261e-12!GO:0051186;cofactor metabolic process;5.15660381486552e-12!GO:0032559;adenyl ribonucleotide binding;5.30399556969876e-12!GO:0006464;protein modification process;5.30399556969876e-12!GO:0005730;nucleolus;7.81993032851208e-12!GO:0051169;nuclear transport;1.07691352601521e-11!GO:0030554;adenyl nucleotide binding;1.11004819652007e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.14022124186838e-11!GO:0000375;RNA splicing, via transesterification reactions;1.14022124186838e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.14022124186838e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.71540273205666e-11!GO:0006260;DNA replication;1.84323339082401e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.90475284595015e-11!GO:0016604;nuclear body;2.58322441238754e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.61932454026764e-11!GO:0016887;ATPase activity;2.80233239896822e-11!GO:0006366;transcription from RNA polymerase II promoter;3.33461916895568e-11!GO:0031965;nuclear membrane;3.54909946158062e-11!GO:0006323;DNA packaging;5.81470746368154e-11!GO:0005789;endoplasmic reticulum membrane;6.09877366118519e-11!GO:0042775;organelle ATP synthesis coupled electron transport;9.7274806442326e-11!GO:0042773;ATP synthesis coupled electron transport;9.7274806442326e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.01044670779117e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.14957343320139e-10!GO:0045271;respiratory chain complex I;1.14957343320139e-10!GO:0005747;mitochondrial respiratory chain complex I;1.14957343320139e-10!GO:0006413;translational initiation;1.19391536711752e-10!GO:0044453;nuclear membrane part;1.20727341782286e-10!GO:0003743;translation initiation factor activity;1.26511088092144e-10!GO:0005761;mitochondrial ribosome;1.48285343982622e-10!GO:0000313;organellar ribosome;1.48285343982622e-10!GO:0006461;protein complex assembly;1.57355505936481e-10!GO:0000279;M phase;2.56771828892123e-10!GO:0043687;post-translational protein modification;2.69679594252575e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.73114712944165e-10!GO:0015630;microtubule cytoskeleton;3.72107631287861e-10!GO:0042623;ATPase activity, coupled;3.77804357285747e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.96154743890995e-10!GO:0005768;endosome;7.57125752803106e-10!GO:0016607;nuclear speck;9.49767280864174e-10!GO:0006446;regulation of translational initiation;1.35438876883433e-09!GO:0006732;coenzyme metabolic process;1.7900803611204e-09!GO:0051726;regulation of cell cycle;2.72129435081215e-09!GO:0000074;regulation of progression through cell cycle;2.7434542500763e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.676025596867e-09!GO:0004386;helicase activity;4.7115761419556e-09!GO:0017038;protein import;4.87302290736985e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.89165409981872e-09!GO:0048523;negative regulation of cellular process;8.31350598419325e-09!GO:0000785;chromatin;1.04976748505443e-08!GO:0008639;small protein conjugating enzyme activity;1.05245336041514e-08!GO:0051246;regulation of protein metabolic process;1.36229930007049e-08!GO:0008565;protein transporter activity;1.99570838445527e-08!GO:0004842;ubiquitin-protein ligase activity;2.32100654381119e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.42170432516917e-08!GO:0050794;regulation of cellular process;2.59246938548157e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.9311442281794e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.97065035139481e-08!GO:0003924;GTPase activity;3.2097789599356e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.98449965206668e-08!GO:0043067;regulation of programmed cell death;4.17262526937466e-08!GO:0042981;regulation of apoptosis;4.36932872821154e-08!GO:0006403;RNA localization;5.14934920511778e-08!GO:0019787;small conjugating protein ligase activity;5.19839462632686e-08!GO:0009055;electron carrier activity;6.52763687208445e-08!GO:0005643;nuclear pore;6.87133462138899e-08!GO:0050657;nucleic acid transport;6.87133462138899e-08!GO:0051236;establishment of RNA localization;6.87133462138899e-08!GO:0050658;RNA transport;6.87133462138899e-08!GO:0006163;purine nucleotide metabolic process;1.15343753428201e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17686677503644e-07!GO:0016568;chromatin modification;1.31188288894955e-07!GO:0048475;coated membrane;1.41284886723252e-07!GO:0030117;membrane coat;1.41284886723252e-07!GO:0043566;structure-specific DNA binding;1.42932311761556e-07!GO:0065004;protein-DNA complex assembly;1.4419110282178e-07!GO:0006333;chromatin assembly or disassembly;1.45991092584685e-07!GO:0009259;ribonucleotide metabolic process;1.62995483374074e-07!GO:0009056;catabolic process;1.87916189352949e-07!GO:0016881;acid-amino acid ligase activity;2.03648619493615e-07!GO:0030120;vesicle coat;2.28487335919249e-07!GO:0030662;coated vesicle membrane;2.28487335919249e-07!GO:0009150;purine ribonucleotide metabolic process;2.32263103208393e-07!GO:0006164;purine nucleotide biosynthetic process;2.41798725843258e-07!GO:0007243;protein kinase cascade;2.57723233086196e-07!GO:0005813;centrosome;3.02360273761675e-07!GO:0048519;negative regulation of biological process;3.98495231488944e-07!GO:0005819;spindle;4.12545352818239e-07!GO:0051170;nuclear import;4.29996671265164e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.83870372593928e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.20327664854962e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.20327664854962e-07!GO:0009060;aerobic respiration;5.20327664854962e-07!GO:0005773;vacuole;5.54358631232302e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.85588297186188e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.85588297186188e-07!GO:0015986;ATP synthesis coupled proton transport;6.02261410157601e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.02261410157601e-07!GO:0009199;ribonucleoside triphosphate metabolic process;6.07165188857782e-07!GO:0005667;transcription factor complex;6.13546783936484e-07!GO:0005788;endoplasmic reticulum lumen;6.38810448588026e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.95982223793667e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.95982223793667e-07!GO:0009260;ribonucleotide biosynthetic process;7.83357459255962e-07!GO:0044431;Golgi apparatus part;7.83357459255962e-07!GO:0005815;microtubule organizing center;8.07863434608734e-07!GO:0045333;cellular respiration;8.33301071221389e-07!GO:0006606;protein import into nucleus;8.33301071221389e-07!GO:0043069;negative regulation of programmed cell death;8.34250839729325e-07!GO:0032446;protein modification by small protein conjugation;8.81108985579784e-07!GO:0009141;nucleoside triphosphate metabolic process;8.84886602271994e-07!GO:0005770;late endosome;9.32007593734541e-07!GO:0008026;ATP-dependent helicase activity;1.062638158015e-06!GO:0065002;intracellular protein transport across a membrane;1.09077047027675e-06!GO:0003697;single-stranded DNA binding;1.22904636304676e-06!GO:0031324;negative regulation of cellular metabolic process;1.36798541863052e-06!GO:0019829;cation-transporting ATPase activity;1.45892688418638e-06!GO:0016787;hydrolase activity;1.49099157598951e-06!GO:0005798;Golgi-associated vesicle;1.61622152054473e-06!GO:0003713;transcription coactivator activity;1.66232624564518e-06!GO:0043066;negative regulation of apoptosis;1.80318983746798e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.93228786703577e-06!GO:0016567;protein ubiquitination;2.21181412543906e-06!GO:0007005;mitochondrion organization and biogenesis;2.22327875184811e-06!GO:0051028;mRNA transport;2.66875174296468e-06!GO:0000245;spliceosome assembly;2.71615424999449e-06!GO:0046930;pore complex;2.78592521384173e-06!GO:0016563;transcription activator activity;2.94613802855033e-06!GO:0044440;endosomal part;3.10676956690224e-06!GO:0010008;endosome membrane;3.10676956690224e-06!GO:0042254;ribosome biogenesis and assembly;3.13791851451315e-06!GO:0006793;phosphorus metabolic process;3.18436240853662e-06!GO:0006796;phosphate metabolic process;3.18436240853662e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.67358873955376e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.26876906631452e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.43205966345675e-06!GO:0000775;chromosome, pericentric region;4.44998728211692e-06!GO:0006754;ATP biosynthetic process;4.60331179034432e-06!GO:0006753;nucleoside phosphate metabolic process;4.60331179034432e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.11455333409558e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.11455333409558e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.11455333409558e-06!GO:0000323;lytic vacuole;5.32089211145101e-06!GO:0005764;lysosome;5.32089211145101e-06!GO:0046034;ATP metabolic process;6.40864701620995e-06!GO:0000151;ubiquitin ligase complex;6.46647220991104e-06!GO:0016564;transcription repressor activity;7.00881297005051e-06!GO:0003714;transcription corepressor activity;7.28727616598735e-06!GO:0043038;amino acid activation;7.6531502154111e-06!GO:0006418;tRNA aminoacylation for protein translation;7.6531502154111e-06!GO:0043039;tRNA aminoacylation;7.6531502154111e-06!GO:0007010;cytoskeleton organization and biogenesis;8.09440193007219e-06!GO:0031988;membrane-bound vesicle;8.09440193007219e-06!GO:0009892;negative regulation of metabolic process;8.26793725470156e-06!GO:0006950;response to stress;8.70659362025832e-06!GO:0043623;cellular protein complex assembly;8.70659362025832e-06!GO:0051188;cofactor biosynthetic process;8.97069762933382e-06!GO:0006099;tricarboxylic acid cycle;9.59827163082969e-06!GO:0046356;acetyl-CoA catabolic process;9.59827163082969e-06!GO:0048522;positive regulation of cellular process;9.97469535649374e-06!GO:0005525;GTP binding;1.00135619756238e-05!GO:0030133;transport vesicle;1.0119252267515e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.05257652930104e-05!GO:0050789;regulation of biological process;1.06937538098764e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.08614018175888e-05!GO:0004298;threonine endopeptidase activity;1.13984132757288e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.3670641603179e-05!GO:0006399;tRNA metabolic process;1.39069691646295e-05!GO:0006613;cotranslational protein targeting to membrane;1.44522843112711e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.52273905829118e-05!GO:0007051;spindle organization and biogenesis;1.54217576320162e-05!GO:0051187;cofactor catabolic process;2.07574998714667e-05!GO:0045259;proton-transporting ATP synthase complex;2.19419540367788e-05!GO:0016310;phosphorylation;2.46823816501242e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.81988466657645e-05!GO:0006334;nucleosome assembly;2.88683105612242e-05!GO:0051325;interphase;2.90714346118346e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.92617291813114e-05!GO:0006084;acetyl-CoA metabolic process;2.93721273970491e-05!GO:0051329;interphase of mitotic cell cycle;2.9991258438773e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.11424963724596e-05!GO:0030867;rough endoplasmic reticulum membrane;3.15437243043672e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.47196067813898e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.56779265893315e-05!GO:0006916;anti-apoptosis;3.68515260707135e-05!GO:0031982;vesicle;3.99861725144952e-05!GO:0000139;Golgi membrane;4.17231438909134e-05!GO:0006261;DNA-dependent DNA replication;4.42517349380158e-05!GO:0051789;response to protein stimulus;4.47367392792801e-05!GO:0006986;response to unfolded protein;4.47367392792801e-05!GO:0051427;hormone receptor binding;4.52309295317269e-05!GO:0005769;early endosome;4.86988754648569e-05!GO:0009109;coenzyme catabolic process;4.89961473013234e-05!GO:0016491;oxidoreductase activity;5.17044489473754e-05!GO:0009117;nucleotide metabolic process;5.57868003546805e-05!GO:0019899;enzyme binding;5.70085198862937e-05!GO:0009967;positive regulation of signal transduction;6.3895144942181e-05!GO:0016859;cis-trans isomerase activity;6.56770767393271e-05!GO:0035257;nuclear hormone receptor binding;7.66324721506902e-05!GO:0016779;nucleotidyltransferase activity;8.19797565146333e-05!GO:0006612;protein targeting to membrane;8.65541971663991e-05!GO:0031252;leading edge;9.50310531670598e-05!GO:0031410;cytoplasmic vesicle;9.50310531670598e-05!GO:0065009;regulation of a molecular function;0.000101825873349537!GO:0031497;chromatin assembly;0.000105097779078657!GO:0016481;negative regulation of transcription;0.000107831120500209!GO:0007264;small GTPase mediated signal transduction;0.000109710581934283!GO:0009108;coenzyme biosynthetic process;0.000110780764205343!GO:0008361;regulation of cell size;0.000127719584932689!GO:0008654;phospholipid biosynthetic process;0.000128436696471836!GO:0016740;transferase activity;0.000132364967913938!GO:0051168;nuclear export;0.000144021763467054!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000149037411976951!GO:0003729;mRNA binding;0.000149445883490686!GO:0019867;outer membrane;0.000152949540207801!GO:0031968;organelle outer membrane;0.000154207855533312!GO:0003690;double-stranded DNA binding;0.000154507724897658!GO:0048471;perinuclear region of cytoplasm;0.000178471040932603!GO:0032561;guanyl ribonucleotide binding;0.000189292797310821!GO:0019001;guanyl nucleotide binding;0.000189292797310821!GO:0042802;identical protein binding;0.000192130524869429!GO:0016049;cell growth;0.000197836149690304!GO:0046983;protein dimerization activity;0.000237846777645849!GO:0045786;negative regulation of progression through cell cycle;0.000257914747983804!GO:0003724;RNA helicase activity;0.000260392473975607!GO:0033116;ER-Golgi intermediate compartment membrane;0.000272584239748369!GO:0016853;isomerase activity;0.000285111239182237!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000393294683154143!GO:0045454;cell redox homeostasis;0.000418641376431847!GO:0006752;group transfer coenzyme metabolic process;0.000437887158978457!GO:0015980;energy derivation by oxidation of organic compounds;0.000444870340495416!GO:0005657;replication fork;0.000480991094053114!GO:0008094;DNA-dependent ATPase activity;0.000490171045786912!GO:0030029;actin filament-based process;0.000530206553744825!GO:0005885;Arp2/3 protein complex;0.000532351734907605!GO:0005741;mitochondrial outer membrane;0.000555824295636561!GO:0005874;microtubule;0.000560702299970578!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000694412126769808!GO:0006364;rRNA processing;0.000694412126769808!GO:0043021;ribonucleoprotein binding;0.000695500122980218!GO:0005048;signal sequence binding;0.000752964550297867!GO:0000776;kinetochore;0.000777097137435683!GO:0007052;mitotic spindle organization and biogenesis;0.000805584381678847!GO:0005762;mitochondrial large ribosomal subunit;0.000806050944511826!GO:0000315;organellar large ribosomal subunit;0.000806050944511826!GO:0051052;regulation of DNA metabolic process;0.000813127494993229!GO:0001558;regulation of cell growth;0.000828273308023543!GO:0065007;biological regulation;0.000871710089529267!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000911305957349709!GO:0005905;coated pit;0.000913302727955169!GO:0048518;positive regulation of biological process;0.000920083680658855!GO:0008047;enzyme activator activity;0.000950164455462855!GO:0045893;positive regulation of transcription, DNA-dependent;0.000976198197724329!GO:0000075;cell cycle checkpoint;0.00101768646392054!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00106630234905766!GO:0016072;rRNA metabolic process;0.00111644568914109!GO:0006302;double-strand break repair;0.00119044871928965!GO:0005791;rough endoplasmic reticulum;0.00119044871928965!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00132978626368535!GO:0015399;primary active transmembrane transporter activity;0.00132978626368535!GO:0009966;regulation of signal transduction;0.00134842492141749!GO:0051920;peroxiredoxin activity;0.00135426366339722!GO:0030658;transport vesicle membrane;0.00142147887796384!GO:0006091;generation of precursor metabolites and energy;0.00142433146417775!GO:0045941;positive regulation of transcription;0.00145273405383427!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00151121298582398!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00153264716050225!GO:0007242;intracellular signaling cascade;0.00158655941971526!GO:0016197;endosome transport;0.00160581613249162!GO:0007088;regulation of mitosis;0.0016226746628362!GO:0003899;DNA-directed RNA polymerase activity;0.00165481306391799!GO:0006891;intra-Golgi vesicle-mediated transport;0.00165481306391799!GO:0005096;GTPase activator activity;0.00167201652883725!GO:0004674;protein serine/threonine kinase activity;0.00184596441028248!GO:0030134;ER to Golgi transport vesicle;0.00200472645647313!GO:0033673;negative regulation of kinase activity;0.00203600305991251!GO:0006469;negative regulation of protein kinase activity;0.00203600305991251!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00207999638745708!GO:0030118;clathrin coat;0.00216661324888139!GO:0044262;cellular carbohydrate metabolic process;0.00217269551764403!GO:0019222;regulation of metabolic process;0.0022017638730698!GO:0051252;regulation of RNA metabolic process;0.00225940751044991!GO:0000314;organellar small ribosomal subunit;0.00227352909962486!GO:0005763;mitochondrial small ribosomal subunit;0.00227352909962486!GO:0003682;chromatin binding;0.00228927407460748!GO:0046489;phosphoinositide biosynthetic process;0.00242594248346894!GO:0016363;nuclear matrix;0.00249010206620924!GO:0031902;late endosome membrane;0.00250547021658757!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00253665576397401!GO:0008092;cytoskeletal protein binding;0.0026451561439289!GO:0008022;protein C-terminus binding;0.0026451561439289!GO:0030663;COPI coated vesicle membrane;0.00273325842985523!GO:0030126;COPI vesicle coat;0.00273325842985523!GO:0007059;chromosome segregation;0.00299173445265997!GO:0005637;nuclear inner membrane;0.0029931687884314!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00299706321408173!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00301664872083261!GO:0016044;membrane organization and biogenesis;0.00302924028288116!GO:0031072;heat shock protein binding;0.00302924028288116!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0030482547310862!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00305548548612227!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00305548548612227!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00305548548612227!GO:0050790;regulation of catalytic activity;0.00306201900170112!GO:0008632;apoptotic program;0.00306674508741534!GO:0008250;oligosaccharyl transferase complex;0.00307734990983478!GO:0051348;negative regulation of transferase activity;0.00329222819088803!GO:0051128;regulation of cellular component organization and biogenesis;0.00344174432798184!GO:0006352;transcription initiation;0.00346957186898609!GO:0046474;glycerophospholipid biosynthetic process;0.00346957186898609!GO:0048487;beta-tubulin binding;0.00367148251148199!GO:0016251;general RNA polymerase II transcription factor activity;0.00400039851352711!GO:0003678;DNA helicase activity;0.00400520971927908!GO:0009165;nucleotide biosynthetic process;0.00400718026691336!GO:0006402;mRNA catabolic process;0.00405365399814265!GO:0043681;protein import into mitochondrion;0.00414040960168138!GO:0048500;signal recognition particle;0.00421276827458541!GO:0008186;RNA-dependent ATPase activity;0.00422229504848631!GO:0030660;Golgi-associated vesicle membrane;0.00424863707295467!GO:0000922;spindle pole;0.00433525192650342!GO:0030132;clathrin coat of coated pit;0.00455137591413076!GO:0019843;rRNA binding;0.00466002686375261!GO:0004576;oligosaccharyl transferase activity;0.00472712901784288!GO:0035258;steroid hormone receptor binding;0.00474069601219166!GO:0003702;RNA polymerase II transcription factor activity;0.00481793642780384!GO:0015631;tubulin binding;0.00483814366679713!GO:0043284;biopolymer biosynthetic process;0.00492902433631715!GO:0030127;COPII vesicle coat;0.0051032773025426!GO:0012507;ER to Golgi transport vesicle membrane;0.0051032773025426!GO:0005876;spindle microtubule;0.00516611734681258!GO:0043492;ATPase activity, coupled to movement of substances;0.00528679340657414!GO:0006607;NLS-bearing substrate import into nucleus;0.00528859312627879!GO:0022890;inorganic cation transmembrane transporter activity;0.00536296871274328!GO:0000082;G1/S transition of mitotic cell cycle;0.00555855505452093!GO:0006417;regulation of translation;0.00568098163451574!GO:0000786;nucleosome;0.00574909716583856!GO:0030119;AP-type membrane coat adaptor complex;0.00575307057838779!GO:0007265;Ras protein signal transduction;0.00580034375085364!GO:0051101;regulation of DNA binding;0.00580034375085364!GO:0007017;microtubule-based process;0.0059949302907451!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0064393875241392!GO:0006414;translational elongation;0.00652251179164251!GO:0030137;COPI-coated vesicle;0.00661421719675677!GO:0006611;protein export from nucleus;0.0067308387112952!GO:0045892;negative regulation of transcription, DNA-dependent;0.00691822501443933!GO:0006892;post-Golgi vesicle-mediated transport;0.00711075300199986!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00731298663308115!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00747496017046938!GO:0005581;collagen;0.00780722462597645!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00790299485530148!GO:0030027;lamellipodium;0.00827607114235998!GO:0008139;nuclear localization sequence binding;0.00827607114235998!GO:0006740;NADPH regeneration;0.00827607114235998!GO:0006098;pentose-phosphate shunt;0.00827607114235998!GO:0032507;maintenance of cellular protein localization;0.00827667441073644!GO:0003746;translation elongation factor activity;0.00830502754969931!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00855129703112042!GO:0016584;nucleosome positioning;0.00868160291199496!GO:0005774;vacuolar membrane;0.00870250857539145!GO:0017166;vinculin binding;0.00876855747329002!GO:0030131;clathrin adaptor complex;0.00883179020140252!GO:0031625;ubiquitin protein ligase binding;0.00894974270793715!GO:0048468;cell development;0.00894974270793715!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00895653795789155!GO:0045047;protein targeting to ER;0.00895653795789155!GO:0043065;positive regulation of apoptosis;0.00905579473864775!GO:0006767;water-soluble vitamin metabolic process;0.00912275441140956!GO:0007040;lysosome organization and biogenesis;0.00947336081413521!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0096427780543096!GO:0005099;Ras GTPase activator activity;0.00996521730201451!GO:0046467;membrane lipid biosynthetic process;0.00998591111935968!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0100840405365472!GO:0030521;androgen receptor signaling pathway;0.0101375382279819!GO:0007093;mitotic cell cycle checkpoint;0.0104168713563245!GO:0005083;small GTPase regulator activity;0.0106835180004373!GO:0004004;ATP-dependent RNA helicase activity;0.0106970186617276!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.010907483663283!GO:0006310;DNA recombination;0.01095326103182!GO:0051087;chaperone binding;0.0116636820354879!GO:0043068;positive regulation of programmed cell death;0.0116731728422474!GO:0006497;protein amino acid lipidation;0.0117742949816152!GO:0007030;Golgi organization and biogenesis;0.0118232038105816!GO:0043407;negative regulation of MAP kinase activity;0.0119206440386987!GO:0042158;lipoprotein biosynthetic process;0.0119644579148014!GO:0008234;cysteine-type peptidase activity;0.0119936794508944!GO:0005684;U2-dependent spliceosome;0.0121635935002965!GO:0007033;vacuole organization and biogenesis;0.0122764161995038!GO:0051098;regulation of binding;0.0123380232621767!GO:0006383;transcription from RNA polymerase III promoter;0.0127826683458219!GO:0030880;RNA polymerase complex;0.0127935758462077!GO:0046822;regulation of nucleocytoplasmic transport;0.0128225120580478!GO:0043488;regulation of mRNA stability;0.0128477967447884!GO:0043487;regulation of RNA stability;0.0128477967447884!GO:0016126;sterol biosynthetic process;0.0129298755496494!GO:0031326;regulation of cellular biosynthetic process;0.0131470329622662!GO:0007034;vacuolar transport;0.0133240905802557!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0139538509717145!GO:0006839;mitochondrial transport;0.0146768350067546!GO:0045045;secretory pathway;0.0147119664868066!GO:0006405;RNA export from nucleus;0.0147268030382861!GO:0003684;damaged DNA binding;0.0147408019186624!GO:0031418;L-ascorbic acid binding;0.0148231862949327!GO:0018196;peptidyl-asparagine modification;0.0148842796433968!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0148842796433968!GO:0030659;cytoplasmic vesicle membrane;0.0152651588634996!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0158442969063111!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0158442969063111!GO:0045792;negative regulation of cell size;0.0158704429306615!GO:0008312;7S RNA binding;0.0167956679631867!GO:0005869;dynactin complex;0.016835563772163!GO:0030176;integral to endoplasmic reticulum membrane;0.0170866742526794!GO:0031901;early endosome membrane;0.0175228378121721!GO:0051651;maintenance of cellular localization;0.0175956365850596!GO:0050662;coenzyme binding;0.0180995929894232!GO:0006275;regulation of DNA replication;0.0181547722046641!GO:0051539;4 iron, 4 sulfur cluster binding;0.0182433794010498!GO:0005583;fibrillar collagen;0.0183185313991227!GO:0051338;regulation of transferase activity;0.0184346312963958!GO:0030308;negative regulation of cell growth;0.0189515457256435!GO:0008637;apoptotic mitochondrial changes;0.0192657154462287!GO:0043022;ribosome binding;0.0193073509606569!GO:0005875;microtubule associated complex;0.0193073509606569!GO:0005765;lysosomal membrane;0.0195453883033595!GO:0043549;regulation of kinase activity;0.0196977175001984!GO:0044437;vacuolar part;0.0197898855023261!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0199012340691251!GO:0032508;DNA duplex unwinding;0.0199863226571281!GO:0032392;DNA geometric change;0.0199863226571281!GO:0006401;RNA catabolic process;0.020126737882412!GO:0006595;polyamine metabolic process;0.0203455717839737!GO:0007041;lysosomal transport;0.0205121403162901!GO:0009889;regulation of biosynthetic process;0.0205806297762291!GO:0043087;regulation of GTPase activity;0.0209291456003541!GO:0006695;cholesterol biosynthetic process;0.0215538770313348!GO:0006739;NADP metabolic process;0.021579535559616!GO:0051287;NAD binding;0.0218729221790999!GO:0008610;lipid biosynthetic process;0.0219256801553693!GO:0000059;protein import into nucleus, docking;0.0219633104472332!GO:0051235;maintenance of localization;0.0220749762890106!GO:0016272;prefoldin complex;0.0225491884009639!GO:0030125;clathrin vesicle coat;0.0225600095157751!GO:0030665;clathrin coated vesicle membrane;0.0225600095157751!GO:0030518;steroid hormone receptor signaling pathway;0.0225926319256732!GO:0006506;GPI anchor biosynthetic process;0.0226281030361012!GO:0004177;aminopeptidase activity;0.0229810223030853!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0235008732596504!GO:0030140;trans-Golgi network transport vesicle;0.0235161801916235!GO:0006769;nicotinamide metabolic process;0.0239848535655264!GO:0006376;mRNA splice site selection;0.0239848535655264!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0239848535655264!GO:0004228;gelatinase A activity;0.024266888788677!GO:0001955;blood vessel maturation;0.024266888788677!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.024266888788677!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0242745796823812!GO:0000428;DNA-directed RNA polymerase complex;0.0242745796823812!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0242745796823812!GO:0008168;methyltransferase activity;0.0243890895102951!GO:0006979;response to oxidative stress;0.024629004167245!GO:0006505;GPI anchor metabolic process;0.0248655833361874!GO:0003756;protein disulfide isomerase activity;0.0250173283492346!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0250173283492346!GO:0046483;heterocycle metabolic process;0.0251068754857149!GO:0003711;transcription elongation regulator activity;0.0257503555747812!GO:0040008;regulation of growth;0.0264911538258818!GO:0030384;phosphoinositide metabolic process;0.0269503473410049!GO:0046966;thyroid hormone receptor binding;0.0269822817423908!GO:0006338;chromatin remodeling;0.0271597714668429!GO:0050811;GABA receptor binding;0.027289456956402!GO:0012506;vesicle membrane;0.0276395183684006!GO:0016741;transferase activity, transferring one-carbon groups;0.0276395183684006!GO:0005832;chaperonin-containing T-complex;0.0278717649429383!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0278717649429383!GO:0006818;hydrogen transport;0.0280493749979953!GO:0006007;glucose catabolic process;0.0281468124605414!GO:0007021;tubulin folding;0.028214695151193!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0283354175159063!GO:0022415;viral reproductive process;0.0291024269975142!GO:0042770;DNA damage response, signal transduction;0.0307173149185631!GO:0008629;induction of apoptosis by intracellular signals;0.0307868005465308!GO:0042585;germinal vesicle;0.031658015706665!GO:0044433;cytoplasmic vesicle part;0.0316931478775834!GO:0042393;histone binding;0.0316931478775834!GO:0006672;ceramide metabolic process;0.0320009946980438!GO:0008017;microtubule binding;0.0321648300959539!GO:0005784;translocon complex;0.032227151505846!GO:0033559;unsaturated fatty acid metabolic process;0.0323924052042142!GO:0006636;unsaturated fatty acid biosynthetic process;0.0323924052042142!GO:0006268;DNA unwinding during replication;0.0324449253609532!GO:0008147;structural constituent of bone;0.0324449253609532!GO:0009893;positive regulation of metabolic process;0.0333115648984865!GO:0016791;phosphoric monoester hydrolase activity;0.0336381051312827!GO:0032940;secretion by cell;0.0342684998131558!GO:0000910;cytokinesis;0.0345995635304022!GO:0000339;RNA cap binding;0.0353882924378254!GO:0007050;cell cycle arrest;0.0355165193470717!GO:0030695;GTPase regulator activity;0.0355283257044268!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0358812008852819!GO:0033043;regulation of organelle organization and biogenesis;0.0358812008852819!GO:0031543;peptidyl-proline dioxygenase activity;0.0360838988494269!GO:0015992;proton transport;0.0364846791056205!GO:0043624;cellular protein complex disassembly;0.037003030056936!GO:0031124;mRNA 3'-end processing;0.037003030056936!GO:0045185;maintenance of protein localization;0.037003030056936!GO:0000118;histone deacetylase complex;0.0382046875641504!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0383211652037559!GO:0031577;spindle checkpoint;0.0383211652037559!GO:0045859;regulation of protein kinase activity;0.0383435319504199!GO:0032906;transforming growth factor-beta2 production;0.0388942951620423!GO:0032909;regulation of transforming growth factor-beta2 production;0.0388942951620423!GO:0045926;negative regulation of growth;0.0388942951620423!GO:0006354;RNA elongation;0.0388942951620423!GO:0003923;GPI-anchor transamidase activity;0.0388942951620423!GO:0016255;attachment of GPI anchor to protein;0.0388942951620423!GO:0042765;GPI-anchor transamidase complex;0.0388942951620423!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0394374154326229!GO:0015002;heme-copper terminal oxidase activity;0.0394374154326229!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0394374154326229!GO:0004129;cytochrome-c oxidase activity;0.0394374154326229!GO:0035035;histone acetyltransferase binding;0.0394723649344768!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0397015316673812!GO:0004003;ATP-dependent DNA helicase activity;0.0400315848027914!GO:0050681;androgen receptor binding;0.0406647672925598!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0408328911458159!GO:0006897;endocytosis;0.04137724374424!GO:0010324;membrane invagination;0.04137724374424!GO:0048144;fibroblast proliferation;0.0426970139960612!GO:0048145;regulation of fibroblast proliferation;0.0426970139960612!GO:0051540;metal cluster binding;0.0428838123561792!GO:0051536;iron-sulfur cluster binding;0.0428838123561792!GO:0048146;positive regulation of fibroblast proliferation;0.0428838123561792!GO:0006509;membrane protein ectodomain proteolysis;0.0443716362750982!GO:0033619;membrane protein proteolysis;0.0443716362750982!GO:0030911;TPR domain binding;0.044554058713319!GO:0006626;protein targeting to mitochondrion;0.0447101060741451!GO:0005092;GDP-dissociation inhibitor activity;0.0447995088147483!GO:0000209;protein polyubiquitination;0.0449078480356391!GO:0008180;signalosome;0.0450520212602528!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0451972116056833!GO:0008154;actin polymerization and/or depolymerization;0.0452908050635632!GO:0019752;carboxylic acid metabolic process;0.0456664834510121!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0457304095602738!GO:0008097;5S rRNA binding;0.0457304095602738!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.045780208388087!GO:0030032;lamellipodium biogenesis;0.0460531926777698!GO:0006749;glutathione metabolic process;0.0460983315795909!GO:0030833;regulation of actin filament polymerization;0.0466292889744345!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0466941070320279!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0466941070320279!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0474219003726613!GO:0031371;ubiquitin conjugating enzyme complex;0.0474876990834884!GO:0000086;G2/M transition of mitotic cell cycle;0.0475984183965349!GO:0006914;autophagy;0.0492720974647826!GO:0019798;procollagen-proline dioxygenase activity;0.0495150107038773!GO:0006518;peptide metabolic process;0.0497124572110264!GO:0007006;mitochondrial membrane organization and biogenesis;0.0497124572110264
 +
|sample_id=10706
 +
|sample_note=
 +
|sample_sex=female
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=liver
 +
|top_motifs=NKX2-1,4:1.79623562941;TEF:1.34093328081;DBP:1.26883133374;FOX{D1,D2}:1.20440373626;PITX1..3:1.18491227847;EVI1:1.17388949542;NFATC1..3:1.09385737397;EN1,2:1.06979032939;BPTF:1.02316127899;SMAD1..7,9:1.01839033567;HMGA1,2:1.01260796006;T:0.981228838467;SOX2:0.979590757757;TLX1..3_NFIC{dimer}:0.872868468797;ADNP_IRX_SIX_ZHX:0.819057899266;STAT5{A,B}:0.811596382481;FOXD3:0.806320638976;SP1:0.791675077694;NKX2-3_NKX2-5:0.772444447631;NKX6-1,2:0.713194749096;FOXP1:0.686213629027;PAX4:0.657314173997;LHX3,4:0.633170405011;NFY{A,B,C}:0.617854906773;TEAD1:0.588268999763;FOXL1:0.578950800933;NFE2:0.575416203832;PPARG:0.568858755599;ALX4:0.537262434705;TLX2:0.521211299412;HIF1A:0.520201023671;E2F1..5:0.514903036051;TAL1_TCF{3,4,12}:0.501631931057;TFAP2B:0.486628139176;NR1H4:0.48407446944;FOX{F1,F2,J1}:0.483282014531;FOX{I1,J2}:0.471037823155;MYB:0.465474171578;NR3C1:0.449194528314;NFIL3:0.431297183127;SOX17:0.427159863197;RFX1:0.393577719679;HOX{A5,B5}:0.379153332616;MAZ:0.372249041906;LEF1_TCF7_TCF7L1,2:0.371158472795;BACH2:0.367277395993;TFCP2:0.366455607213;IRF7:0.351443560518;HAND1,2:0.33818891811;MYOD1:0.331861005396;GFI1:0.331790088449;HBP1_HMGB_SSRP1_UBTF:0.327405567111;NANOG{mouse}:0.317842309194;FOXA2:0.315325911036;STAT2,4,6:0.311461750364;CDC5L:0.310627334911;POU6F1:0.30940012376;FOS_FOS{B,L1}_JUN{B,D}:0.29652248193;IRF1,2:0.295916305242;SOX{8,9,10}:0.274995381919;TFDP1:0.262542975553;IKZF2:0.261185672261;AHR_ARNT_ARNT2:0.258145268221;NFE2L2:0.240045529618;CEBPA,B_DDIT3:0.234219593704;RUNX1..3:0.221044954494;ELK1,4_GABP{A,B1}:0.201809362955;UFEwm:0.195637541616;ZNF143:0.193666172174;MZF1:0.191989453351;MTF1:0.185912805169;ZNF423:0.179629037896;GATA4:0.175273309865;XCPE1{core}:0.169083175454;MYBL2:0.162637095348;ZBTB16:0.146215218533;CRX:0.142071904795;NKX3-2:0.129819595144;FOSL2:0.127444532206;GTF2I:0.119169028272;HSF1,2:0.118884814263;EGR1..3:0.117931932504;SRF:0.0991053224763;HNF1A:0.0947817453267;HIC1:0.075845771674;TFAP4:0.0723828396515;HNF4A_NR2F1,2:0.0683206213096;GLI1..3:0.0620006093373;EP300:0.0580376288654;FOXQ1:0.0512110746337;HES1:0.0510853763868;FOXN1:0.0498000690889;HLF:0.0462143476831;MTE{core}:0.0446530889877;RBPJ:0.033869184087;PBX1:0.0329756335372;PDX1:0.0295871761952;PAX6:0.0253333815824;FOXP3:0.0221266218056;ESRRA:0.0144850537935;NRF1:0.00376275987092;PAX1,9:-0.00557383263637;IKZF1:-0.00961436608114;PAX2:-0.0323541327737;MED-1{core}:-0.0598810690463;FOXO1,3,4:-0.0685875568609;NR6A1:-0.072801329284;HOX{A4,D4}:-0.0806941871018;NFIX:-0.10071188754;NKX3-1:-0.103217256086;DMAP1_NCOR{1,2}_SMARC:-0.11421259137;RXR{A,B,G}:-0.11984647814;PAX3,7:-0.137164959109;NFKB1_REL_RELA:-0.13814982656;PATZ1:-0.1458964462;JUN:-0.146101569994;SREBF1,2:-0.152880018538;PRDM1:-0.161117990773;ATF5_CREB3:-0.168723430063;ZNF384:-0.174952053998;ELF1,2,4:-0.175272608571;GCM1,2:-0.175886760827;CUX2:-0.176433745764;ATF2:-0.183619184233;RFX2..5_RFXANK_RFXAP:-0.188319703536;SPIB:-0.191834098748;POU3F1..4:-0.196699555945;PAX5:-0.19695103592;MYFfamily:-0.198086100885;STAT1,3:-0.218128348409;AR:-0.218515575744;NKX2-2,8:-0.220922274283;GATA6:-0.223796788866;PAX8:-0.254756314884;ZBTB6:-0.272720018072;GFI1B:-0.2883773021;POU5F1:-0.294264571021;OCT4_SOX2{dimer}:-0.299083331127;ZIC1..3:-0.299384488725;ZFP161:-0.30013177218;XBP1:-0.300511591521;SOX5:-0.304974454461;ATF6:-0.305908653439;GTF2A1,2:-0.309452395843;TFAP2{A,C}:-0.316903243911;TBP:-0.322512058572;ARID5B:-0.325769644242;RORA:-0.373123977898;FOXM1:-0.376721064408;VSX1,2:-0.380649635945;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.38540381452;EBF1:-0.386571978528;ETS1,2:-0.386855036629;AIRE:-0.387718375769;TBX4,5:-0.390259293392;MEF2{A,B,C,D}:-0.402819065029;HOXA9_MEIS1:-0.421605831826;NFE2L1:-0.421627445546;bHLH_family:-0.429555503061;KLF4:-0.446044720831;ZNF148:-0.447943374245;PRRX1,2:-0.457542133423;YY1:-0.459621183183;NHLH1,2:-0.460406238714;ATF4:-0.464350808277;TP53:-0.472794884497;SNAI1..3:-0.478410104079;TOPORS:-0.47868344638;REST:-0.494205682203;SPI1:-0.499380205368;RXRA_VDR{dimer}:-0.50197695667;MAFB:-0.510922500498;CDX1,2,4:-0.512091259421;BREu{core}:-0.513516008452;ZNF238:-0.525908501591;ALX1:-0.555903009813;POU2F1..3:-0.565769181786;RREB1:-0.568250209067;GZF1:-0.605479559458;CREB1:-0.606904856465;ONECUT1,2:-0.627333112616;ZEB1:-0.63325380036;NR5A1,2:-0.6678577566;TGIF1:-0.698985294134;POU1F1:-0.808136580838;HMX1:-0.854933564671;HOX{A6,A7,B6,B7}:-0.932486011408;NANOG:-1.02156223805;ESR1:-1.17240076019;LMO2:-1.27125320785;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.32747351407;SPZ1:-1.38952850378
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10706-109H4;search_select_hide=table117:FF:10706-109H4
 
}}
 
}}

Latest revision as of 05:34, 3 June 2020

Name:pleomorphic hepatocellular carcinoma cell line:SNU-387
Species:Human (Homo sapiens)
Library ID:CNhs11933
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexfemale
age41
cell typehepatocyte
cell lineSNU-387
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005502
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11933 CAGE DRX007986 DRR008858
Accession ID Hg19

Library idBAMCTSS
CNhs11933 DRZ000283 DRZ001668
Accession ID Hg38

Library idBAMCTSS
CNhs11933 DRZ011633 DRZ013018
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0358
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.323
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.269
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0839
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0215
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0687
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.128
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0217
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.0294
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0687
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.246
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0687
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0687
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0687
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0687
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0596
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0625
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.151
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.686
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.573
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.18
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0687
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.502
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11933

Jaspar motif P-value
MA0002.2 0.401
MA0003.1 0.423
MA0004.1 0.00423
MA0006.1 0.25
MA0007.1 0.952
MA0009.1 0.705
MA0014.1 0.175
MA0017.1 0.336
MA0018.2 0.374
MA0019.1 0.385
MA0024.1 0.0854
MA0025.1 0.679
MA0027.1 0.489
MA0028.1 0.427
MA0029.1 0.297
MA0030.1 0.0942
MA0031.1 4.2151e-5
MA0035.2 0.0186
MA0038.1 0.211
MA0039.2 0.221
MA0040.1 0.812
MA0041.1 0.648
MA0042.1 0.769
MA0043.1 0.801
MA0046.1 0.768
MA0047.2 0.00967
MA0048.1 0.386
MA0050.1 0.0105
MA0051.1 0.0092
MA0052.1 0.0999
MA0055.1 0.229
MA0057.1 0.192
MA0058.1 4.54691e-4
MA0059.1 3.49286e-4
MA0060.1 0.0478
MA0061.1 0.213
MA0062.2 0.023
MA0065.2 0.275
MA0066.1 0.59
MA0067.1 0.631
MA0068.1 0.519
MA0069.1 0.814
MA0070.1 0.559
MA0071.1 0.399
MA0072.1 0.276
MA0073.1 0.497
MA0074.1 0.659
MA0076.1 0.28
MA0077.1 0.00451
MA0078.1 0.65
MA0079.2 0.119
MA0080.2 1.16455e-6
MA0081.1 0.0196
MA0083.1 0.722
MA0084.1 0.0292
MA0087.1 0.0184
MA0088.1 0.229
MA0090.1 0.00515
MA0091.1 0.828
MA0092.1 0.224
MA0093.1 0.00246
MA0099.2 1.08544e-7
MA0100.1 0.0153
MA0101.1 0.958
MA0102.2 0.479
MA0103.1 2.21077e-4
MA0104.2 0.0018
MA0105.1 0.0842
MA0106.1 0.593
MA0107.1 0.841
MA0108.2 0.0141
MA0111.1 0.676
MA0112.2 0.0464
MA0113.1 0.509
MA0114.1 0.761
MA0115.1 0.237
MA0116.1 0.0206
MA0117.1 0.206
MA0119.1 0.0157
MA0122.1 0.3
MA0124.1 0.209
MA0125.1 0.995
MA0131.1 0.534
MA0135.1 0.0232
MA0136.1 4.41268e-4
MA0137.2 0.774
MA0138.2 0.702
MA0139.1 0.467
MA0140.1 0.548
MA0141.1 0.118
MA0142.1 0.98
MA0143.1 0.165
MA0144.1 0.481
MA0145.1 0.904
MA0146.1 0.366
MA0147.1 1.03566e-4
MA0148.1 0.0218
MA0149.1 0.579
MA0150.1 0.0205
MA0152.1 4.8391e-4
MA0153.1 0.0839
MA0154.1 0.00751
MA0155.1 0.171
MA0156.1 0.0752
MA0157.1 6.53683e-4
MA0159.1 0.248
MA0160.1 0.266
MA0162.1 0.248
MA0163.1 0.00414
MA0164.1 0.956
MA0258.1 0.46
MA0259.1 0.0366



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11933

Novel motif P-value
1 0.858
10 0.117
100 0.238
101 0.58
102 0.363
103 0.259
104 0.72
105 0.404
106 0.253
107 0.315
108 0.139
109 0.887
11 0.364
110 0.854
111 0.456
112 0.108
113 0.172
114 0.149
115 0.442
116 0.642
117 0.646
118 0.774
119 0.839
12 0.418
120 0.684
121 0.276
122 0.228
123 0.566
124 0.112
125 0.718
126 0.162
127 0.643
128 0.4
129 0.92
13 0.491
130 0.345
131 0.809
132 0.455
133 0.339
134 0.415
135 0.341
136 0.243
137 0.453
138 0.817
139 0.139
14 0.522
140 0.0657
141 0.721
142 0.51
143 0.299
144 0.848
145 0.197
146 0.536
147 0.887
148 0.195
149 0.924
15 0.0347
150 0.311
151 0.917
152 0.656
153 0.275
154 0.411
155 0.236
156 0.813
157 0.171
158 0.0831
159 0.523
16 0.812
160 0.37
161 0.182
162 0.763
163 0.175
164 0.437
165 0.179
166 0.309
167 0.531
168 0.244
169 0.572
17 0.0832
18 0.0752
19 0.318
2 0.344
20 0.287
21 0.0899
22 0.992
23 0.381
24 0.46
25 0.179
26 0.679
27 0.431
28 0.177
29 0.402
3 0.62
30 0.453
31 0.729
32 0.11
33 0.997
34 0.177
35 0.0957
36 0.439
37 0.143
38 0.271
39 0.923
4 0.467
40 0.0725
41 0.295
42 0.447
43 0.535
44 0.166
45 0.323
46 0.299
47 0.182
48 0.619
49 0.462
5 0.0291
50 0.946
51 0.234
52 0.824
53 0.475
54 0.915
55 0.0561
56 0.999
57 0.812
58 0.437
59 0.233
6 0.662
60 0.784
61 0.467
62 0.441
63 0.869
64 0.872
65 0.263
66 0.0637
67 0.506
68 0.16
69 0.197
7 0.829
70 0.0573
71 0.599
72 0.172
73 0.834
74 0.223
75 0.361
76 0.511
77 0.743
78 0.324
79 0.963
8 0.637
80 0.795
81 0.101
82 0.231
83 0.481
84 0.486
85 0.705
86 0.706
87 0.225
88 0.881
89 0.133
9 0.697
90 0.653
91 0.307
92 0.599
93 0.398
94 0.11
95 0.00204
96 0.742
97 0.203
98 0.00389
99 0.528



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11933


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
5662 (pleomorphic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0103191 (SNU-387 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)