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|full_id=C119_CD4_CD8_Natural_Neutrophils_CD14_Peripheral_CD19
|full_id=C119_CD4_CD8_Natural_Neutrophils_CD14_Peripheral_CD19
|id=C119
|id=C119
|ontology_enrichment_celltype=CL:0000738!3.49e-41!140;CL:0000037!4.22e-38!172;CL:0000566!4.22e-38!172;CL:0002032!2.08e-34!165;CL:0000837!2.08e-34!165;CL:0000988!5.69e-34!182;CL:0002087!9.78e-34!119;CL:0002031!1.47e-33!124;CL:0000766!8.32e-22!76;CL:0002057!6.13e-21!42;CL:0000860!3.97e-20!45;CL:0000763!1.21e-18!112;CL:0000049!1.21e-18!112;CL:0000557!8.23e-18!71;CL:0000839!1.34e-17!70;CL:0002009!2.38e-17!65;CL:0002194!1.41e-16!63;CL:0000576!1.41e-16!63;CL:0000040!1.41e-16!63;CL:0000559!1.41e-16!63;CL:0000542!4.59e-15!53;CL:0000051!4.59e-15!53;CL:0000838!9.22e-15!52;CL:0000084!5.99e-08!25;CL:0000827!5.99e-08!25;CL:0000791!7.83e-08!18;CL:0000789!7.83e-08!18;CL:0002420!7.83e-08!18;CL:0002419!7.83e-08!18;CL:0000790!7.83e-08!18
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!1.44e-20!102;UBERON:0003061!1.44e-20!102;UBERON:0002193!1.41e-17!112;UBERON:0007023!3.41e-15!115;UBERON:0002371!1.59e-14!80;UBERON:0001474!4.32e-14!86;UBERON:0002405!2.41e-10!115;UBERON:0004765!1.82e-09!101;UBERON:0001434!1.82e-09!101;UBERON:0001049!5.33e-09!57;UBERON:0005068!5.33e-09!57;UBERON:0006241!5.33e-09!57;UBERON:0007135!5.33e-09!57;UBERON:0002780!1.56e-08!41;UBERON:0001890!1.56e-08!41;UBERON:0006240!1.56e-08!41;UBERON:0003080!4.14e-08!42;UBERON:0002020!9.53e-08!34;UBERON:0003528!9.53e-08!34;UBERON:0001893!2.81e-07!34;UBERON:0002791!2.91e-07!33
}}
}}

Revision as of 14:08, 21 May 2012


Full id: C119_CD4_CD8_Natural_Neutrophils_CD14_Peripheral_CD19



Phase1 CAGE Peaks

Hg19::chr10:104154623..104154634,-p@chr10:104154623..104154634
-
Hg19::chr10:104154653..104154676,-p@chr10:104154653..104154676
-
Hg19::chr10:112651237..112651241,+p@chr10:112651237..112651241
+
Hg19::chr10:11353826..11353848,+p@chr10:11353826..11353848
+
Hg19::chr10:65027874..65027877,-p@chr10:65027874..65027877
-
Hg19::chr10:65027985..65027997,-p@chr10:65027985..65027997
-
Hg19::chr10:92933352..92933355,+p@chr10:92933352..92933355
+
Hg19::chr11:116949703..116949707,-p@chr11:116949703..116949707
-
Hg19::chr11:116965905..116965909,-p@chr11:116965905..116965909
-
Hg19::chr11:11864406..11864410,+p@chr11:11864406..11864410
+
Hg19::chr11:128392930..128392935,-p@chr11:128392930..128392935
-
Hg19::chr11:236540..236552,+p4@PSMD13
Hg19::chr12:107474424..107474428,-p@chr12:107474424..107474428
-
Hg19::chr12:107474519..107474540,-p@chr12:107474519..107474540
-
Hg19::chr12:123007386..123007400,-p13@RSRC2
Hg19::chr12:42600096..42600100,-p@chr12:42600096..42600100
-
Hg19::chr12:46646776..46646779,-p@chr12:46646776..46646779
-
Hg19::chr12:46655021..46655038,-p@chr12:46655021..46655038
-
Hg19::chr12:76459827..76459839,-p@chr12:76459827..76459839
-
Hg19::chr12:76477250..76477254,-p@chr12:76477250..76477254
-
Hg19::chr12:76888073..76888081,-p@chr12:76888073..76888081
-
Hg19::chr12:76897863..76897867,-p@chr12:76897863..76897867
-
Hg19::chr12:76907432..76907453,-p@chr12:76907432..76907453
-
Hg19::chr12:76907895..76907908,-p@chr12:76907895..76907908
-
Hg19::chr12:76923300..76923308,-p@chr12:76923300..76923308
-
Hg19::chr12:76930594..76930597,-p@chr12:76930594..76930597
-
Hg19::chr12:76938616..76938625,-p@chr12:76938616..76938625
-
Hg19::chr12:76947457..76947461,-p@chr12:76947457..76947461
-
Hg19::chr12:96788573..96788578,-p@chr12:96788573..96788578
-
Hg19::chr13:114857364..114857368,-p@chr13:114857364..114857368
-
Hg19::chr13:114857775..114857792,-p@chr13:114857775..114857792
-
Hg19::chr13:42040169..42040200,+p@chr13:42040169..42040200
+
Hg19::chr13:42040361..42040370,+p@chr13:42040361..42040370
+
Hg19::chr13:74666129..74666133,-p@chr13:74666129..74666133
-
Hg19::chr14:102231155..102231159,+p@chr14:102231155..102231159
+
Hg19::chr14:73571851..73571854,+p@chr14:73571851..73571854
+
Hg19::chr14:73572244..73572278,+p13@RBM25
Hg19::chr14:73572416..73572428,+p20@RBM25
Hg19::chr14:91487293..91487316,-p@chr14:91487293..91487316
-
Hg19::chr15:31662268..31662273,+p@chr15:31662268..31662273
+
Hg19::chr15:44830501..44830505,+p@chr15:44830501..44830505
+
Hg19::chr15:49439919..49439923,-p@chr15:49439919..49439923
-
Hg19::chr15:63821398..63821402,+p@chr15:63821398..63821402
+
Hg19::chr15:64090742..64090747,-p@chr15:64090742..64090747
-
Hg19::chr15:64118980..64118984,-p@chr15:64118980..64118984
-
Hg19::chr15:93375332..93375348,+p@chr15:93375332..93375348
+
Hg19::chr16:12005900..12005904,-p@chr16:12005900..12005904
-
Hg19::chr16:16055647..16055651,+p@chr16:16055647..16055651
+
Hg19::chr16:2805077..2805090,+p@chr16:2805077..2805090
+
Hg19::chr16:2805903..2805918,+p4@AB384460
Hg19::chr17:76800704..76800708,-p@chr17:76800704..76800708
-
Hg19::chr18:9235961..9235966,+p@chr18:9235961..9235966
+
Hg19::chr19:19711327..19711332,-p@chr19:19711327..19711332
-
Hg19::chr19:19724251..19724255,-p@chr19:19724251..19724255
-
Hg19::chr19:41837891..41837901,-p@chr19:41837891..41837901
-
Hg19::chr1:100852581..100852585,+p@chr1:100852581..100852585
+
Hg19::chr1:114500490..114500496,+p@chr1:114500490..114500496
+
Hg19::chr1:14078034..14078040,+p@chr1:14078034..14078040
+
Hg19::chr1:151733371..151733385,-p2@MRPL9
Hg19::chr1:91418566..91418570,-p@chr1:91418566..91418570
-
Hg19::chr20:39706609..39706614,+p@chr20:39706609..39706614
+
Hg19::chr20:48532257..48532296,-p3@SPATA2
Hg19::chr21:38742604..38742609,+p@chr21:38742604..38742609
+
Hg19::chr22:31686755..31686762,-p11@PIK3IP1
Hg19::chr2:109349738..109349742,+p@chr2:109349738..109349742
+
Hg19::chr2:144425868..144425873,+p@chr2:144425868..144425873
+
Hg19::chr2:158263168..158263180,-p@chr2:158263168..158263180
-
Hg19::chr2:158263415..158263426,-p@chr2:158263415..158263426
-
Hg19::chr2:201726817..201726830,-p1@AB385095
p1@CU689170
Hg19::chr2:201726882..201726895,-p4@AB385095
p4@CU689170
Hg19::chr2:208395498..208395544,-p@chr2:208395498..208395544
-
Hg19::chr2:238604411..238604415,+p@chr2:238604411..238604415
+
Hg19::chr2:238632708..238632710,+p@chr2:238632708..238632710
+
Hg19::chr2:30374508..30374519,+p@chr2:30374508..30374519
+
Hg19::chr2:42403149..42403151,+p@chr2:42403149..42403151
+
Hg19::chr2:42406418..42406423,+p@chr2:42406418..42406423
+
Hg19::chr2:42435947..42435950,+p@chr2:42435947..42435950
+
Hg19::chr2:42454630..42454634,+p@chr2:42454630..42454634
+
Hg19::chr2:42491268..42491272,+p@chr2:42491268..42491272
+
Hg19::chr2:42509260..42509289,+p@chr2:42509260..42509289
+
Hg19::chr2:43450988..43451009,+p@chr2:43450988..43451009
+
Hg19::chr2:44415551..44415555,+p@chr2:44415551..44415555
+
Hg19::chr2:54131142..54131150,-p@chr2:54131142..54131150
-
Hg19::chr2:54143375..54143380,-p@chr2:54143375..54143380
-
Hg19::chr3:150331479..150331484,+p@chr3:150331479..150331484
+
Hg19::chr3:156871560..156871581,-p8@CCNL1
Hg19::chr3:156876358..156876378,-p@chr3:156876358..156876378
-
Hg19::chr3:24004520..24004523,+p@chr3:24004520..24004523
+
Hg19::chr3:66317021..66317026,+p@chr3:66317021..66317026
+
Hg19::chr4:144437378..144437381,+p@chr4:144437378..144437381
+
Hg19::chr4:26863956..26863961,+p@chr4:26863956..26863961
+
Hg19::chr4:26888828..26888832,+p@chr4:26888828..26888832
+
Hg19::chr4:78718253..78718257,-p@chr4:78718253..78718257
-
Hg19::chr4:78720855..78720860,-p@chr4:78720855..78720860
-
Hg19::chr4:78733020..78733033,-p@chr4:78733020..78733033
-
Hg19::chr4:78737665..78737673,-p@chr4:78737665..78737673
-
Hg19::chr5:133483661..133483664,-p@chr5:133483661..133483664
-
Hg19::chr5:137847883..137847887,-p@chr5:137847883..137847887
-
Hg19::chr5:32592645..32592684,+p@chr5:32592645..32592684
+
Hg19::chr5:78546489..78546494,+p@chr5:78546489..78546494
+
Hg19::chr5:86679492..86679496,-p@chr5:86679492..86679496
-
Hg19::chr5:86688887..86688891,-p1@AF147385
Hg19::chr5:86702025..86702037,-p@chr5:86702025..86702037
-
Hg19::chr5:93347585..93347589,-p@chr5:93347585..93347589
-
Hg19::chr6:108120964..108120970,-p@chr6:108120964..108120970
-
Hg19::chr6:112173933..112173944,-p@chr6:112173933..112173944
-
Hg19::chr6:112180041..112180045,-p5@FYN
Hg19::chr6:112189200..112189211,-p@chr6:112189200..112189211
-
Hg19::chr6:112193883..112193886,-p@chr6:112193883..112193886
-
Hg19::chr6:136595436..136595441,-p@chr6:136595436..136595441
-
Hg19::chr6:136604313..136604317,-p@chr6:136604313..136604317
-
Hg19::chr6:17706964..17706975,-p6@NUP153
Hg19::chr6:36562566..36562576,+p2@SRSF3
Hg19::chr7:104657935..104657939,+p@chr7:104657935..104657939
+
Hg19::chr7:130639708..130639711,-p@chr7:130639708..130639711
-
Hg19::chr7:130682516..130682520,-p@chr7:130682516..130682520
-
Hg19::chr7:130696594..130696598,-p@chr7:130696594..130696598
-
Hg19::chr7:130706575..130706580,-p@chr7:130706575..130706580
-
Hg19::chr7:130713444..130713447,-p@chr7:130713444..130713447
-
Hg19::chr7:130721764..130721768,-p@chr7:130721764..130721768
-
Hg19::chr7:130733252..130733259,-p@chr7:130733252..130733259
-
Hg19::chr7:130736100..130736111,-p@chr7:130736100..130736111
-
Hg19::chr7:130747243..130747247,-p@chr7:130747243..130747247
-
Hg19::chr7:130749095..130749100,-p@chr7:130749095..130749100
-
Hg19::chr7:130750948..130750974,-p@chr7:130750948..130750974
-
Hg19::chr7:130754354..130754358,-p@chr7:130754354..130754358
-
Hg19::chr7:130761947..130761952,-p@chr7:130761947..130761952
-
Hg19::chr7:130762806..130762809,-p@chr7:130762806..130762809
-
Hg19::chr7:130764028..130764045,-p@chr7:130764028..130764045
-
Hg19::chr7:130764433..130764455,-p@chr7:130764433..130764455
-
Hg19::chr7:130776359..130776382,-p@chr7:130776359..130776382
-
Hg19::chr7:130784736..130784755,-p@chr7:130784736..130784755
-
Hg19::chr7:130788982..130788993,-p@chr7:130788982..130788993
-
Hg19::chr7:130791396..130791404,-p@chr7:130791396..130791404
-
Hg19::chr7:130792078..130792092,-p4@FLJ43663
Hg19::chr7:43657259..43657264,+p@chr7:43657259..43657264
+
Hg19::chr7:73103695..73103699,+p@chr7:73103695..73103699
+
Hg19::chr7:73601169..73601173,+p@chr7:73601169..73601173
+
Hg19::chr8:101310423..101310427,-p@chr8:101310423..101310427
-
Hg19::chr8:101319769..101319780,-p@chr8:101319769..101319780
-
Hg19::chr8:38775807..38775820,+p@chr8:38775807..38775820
+
Hg19::chr8:38775907..38775911,+p@chr8:38775907..38775911
+
Hg19::chr9:117132252..117132282,-p@chr9:117132252..117132282
-
Hg19::chr9:4798896..4798900,+p@chr9:4798896..4798900
+
Hg19::chr9:74338045..74338052,-p@chr9:74338045..74338052
-
Hg19::chr9:74361509..74361513,-p@chr9:74361509..74361513
-
Hg19::chr9:74364317..74364322,-p@chr9:74364317..74364322
-
Hg19::chrX:148571595..148571630,-p@chrX:148571595..148571630
-
Hg19::chrX:148575195..148575213,-p@chrX:148575195..148575213
-
Hg19::chrX:153338949..153338953,-p@chrX:153338949..153338953
-
Hg19::chrY:15026667..15026674,+p@chrY:15026667..15026674
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
leukocyte3.49e-41140
hematopoietic stem cell4.22e-38172
angioblastic mesenchymal cell4.22e-38172
hematopoietic oligopotent progenitor cell2.08e-34165
hematopoietic multipotent progenitor cell2.08e-34165
hematopoietic cell5.69e-34182
nongranular leukocyte9.78e-34119
hematopoietic lineage restricted progenitor cell1.47e-33124
myeloid leukocyte8.32e-2276
CD14-positive, CD16-negative classical monocyte6.13e-2142
classical monocyte3.97e-2045
myeloid cell1.21e-18112
common myeloid progenitor1.21e-18112
granulocyte monocyte progenitor cell8.23e-1871
myeloid lineage restricted progenitor cell1.34e-1770
macrophage dendritic cell progenitor2.38e-1765
monopoietic cell1.41e-1663
monocyte1.41e-1663
monoblast1.41e-1663
promonocyte1.41e-1663
lymphocyte4.59e-1553
common lymphoid progenitor4.59e-1553
lymphoid lineage restricted progenitor cell9.22e-1552
T cell5.99e-0825
pro-T cell5.99e-0825
mature alpha-beta T cell7.83e-0818
alpha-beta T cell7.83e-0818
immature T cell7.83e-0818
mature T cell7.83e-0818
immature alpha-beta T cell7.83e-0818
Uber Anatomy
Ontology termp-valuen
hematopoietic system1.44e-20102
blood island1.44e-20102
hemolymphoid system1.41e-17112
adult organism3.41e-15115
bone marrow1.59e-1480
bone element4.32e-1486
immune system2.41e-10115
skeletal element1.82e-09101
skeletal system1.82e-09101
neural tube5.33e-0957
neural rod5.33e-0957
future spinal cord5.33e-0957
neural keel5.33e-0957
regional part of forebrain1.56e-0841
forebrain1.56e-0841
future forebrain1.56e-0841
anterior neural tube4.14e-0842
gray matter9.53e-0834
brain grey matter9.53e-0834
telencephalon2.81e-0734
regional part of telencephalon2.91e-0733


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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