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MCL coexpression mm9:1967: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002320!1.47e-12!46;CL:0000134!1.47e-12!46;CL:0000988!3.74e-10!32;CL:0002032!3.74e-10!32;CL:0000037!3.74e-10!32;CL:0000566!3.74e-10!32;CL:0000837!3.74e-10!32;CL:0000219!1.98e-09!54;CL:0000838!1.46e-08!12;CL:0002031!1.48e-08!25;CL:0000738!2.75e-08!17;CL:0002087!2.75e-08!17;CL:0000084!4.67e-08!11;CL:0000827!4.67e-08!11;CL:0000542!7.48e-08!13;CL:0000051!7.48e-08!13;CL:0000791!3.31e-07!9;CL:0000789!3.31e-07!9;CL:0002420!3.31e-07!9;CL:0002419!3.31e-07!9;CL:0000790!3.31e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!3.26e-17!48;UBERON:0002405!3.26e-17!48;UBERON:0004119!3.87e-17!118;UBERON:0000925!3.87e-17!118;UBERON:0006595!3.87e-17!118;UBERON:0001007!1.19e-16!116;UBERON:0001555!1.19e-16!116;UBERON:0007026!1.19e-16!116;UBERON:0004921!5.60e-16!114;UBERON:0002390!6.32e-16!45;UBERON:0003061!6.32e-16!45;UBERON:0002384!1.47e-12!46;UBERON:0000490!6.80e-11!66;UBERON:0000077!1.61e-10!35;UBERON:0003929!2.41e-10!55;UBERON:0005911!6.40e-10!69;UBERON:0004177!6.46e-10!29;UBERON:0005057!6.46e-10!29;UBERON:0001041!1.19e-09!80;UBERON:0003408!6.23e-08!24;UBERON:0002370!8.12e-08!23;UBERON:0000974!8.12e-08!23;UBERON:0004807!8.12e-08!23;UBERON:0005058!8.12e-08!23;UBERON:0003351!8.12e-08!23;UBERON:0009113!8.12e-08!23;UBERON:0003295!8.12e-08!23;UBERON:0009722!8.12e-08!23;UBERON:0005562!8.12e-08!23;UBERON:0007690!8.12e-08!23;UBERON:0006562!1.27e-07!24;UBERON:0001557!1.27e-07!24;UBERON:0001042!1.27e-07!24;UBERON:0008814!1.27e-07!24;UBERON:0009145!1.27e-07!24;UBERON:0002530!1.44e-07!65;UBERON:0003081!1.66e-07!87;UBERON:0002371!6.05e-07!16
}}
}}

Revision as of 17:43, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:48900524..48900554,+p1@Ifi47
p1@Olfr56
Mm9::chr11:48900563..48900574,+p2@Ifi47
Mm9::chr17:36179901..36179929,+p1@Gm6034
Mm9::chr9:108957616..108957628,+p6@Shisa5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system3.26e-1748
immune system3.26e-1748
endoderm-derived structure3.87e-17118
endoderm3.87e-17118
presumptive endoderm3.87e-17118
digestive system1.19e-16116
digestive tract1.19e-16116
primitive gut1.19e-16116
subdivision of digestive tract5.60e-16114
hematopoietic system6.32e-1645
blood island6.32e-1645
connective tissue1.47e-1246
unilaminar epithelium6.80e-1166
mixed endoderm/mesoderm-derived structure1.61e-1035
gut epithelium2.41e-1055
endo-epithelium6.40e-1069
hemopoietic organ6.46e-1029
immune organ6.46e-1029
foregut1.19e-0980
gland of gut6.23e-0824
thymus8.12e-0823
neck8.12e-0823
respiratory system epithelium8.12e-0823
hemolymphoid system gland8.12e-0823
pharyngeal epithelium8.12e-0823
thymic region8.12e-0823
pharyngeal gland8.12e-0823
entire pharyngeal arch endoderm8.12e-0823
thymus primordium8.12e-0823
early pharyngeal endoderm8.12e-0823
pharynx1.27e-0724
upper respiratory tract1.27e-0724
chordate pharynx1.27e-0724
pharyngeal arch system1.27e-0724
pharyngeal region of foregut1.27e-0724
gland1.44e-0765
lateral plate mesoderm1.66e-0787
bone marrow6.05e-0716


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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