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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0.125727960712818,0.0455894054315693,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0834533319011762,0,0,0.145411995067922,0.0896964873768703,0,0,0,0.0755555083173967,0,0.0434877098916977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0400093965272457,0.18440492317299,0,0,0,0,0,0,0,0,0,0,0.050354161091433,0.109123086691028,0.12277748593221,0,0.0198746585451445,0,0.505464404962115,0.441094405811093,0.573761976486374,0.123224102318956,0.176810392371935,0.0910522389263605,0.325665874540913,0.387626206214038,0.463739992732168,0.334151889143925,0.350443038236559,0,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0.82667432380898,0.5954765028743,0.620997582955309,0.60942017110563,0.953566003289279,0.844913367525133,1.02597122581686,0,0,0,0,0,0,0,0.336684465725675,0.351591407788256,0.098801861608942,0,0,0,0.161179842546876,0.375206552143423,0.138922288373465,0.325071741860858,0.325564651783995,0.280983247977995,0.295225594521175,0,0,0,0.0829439327499637,0,0,0,0.0876889746819101,0.0912850895577325,0.116017654526984,0.197359136203057,0.21528594805925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427171743726688,0.116844694267823,0.0619941838335705,0,0,0,0,0,0.0872055405749939,0.0756292965920817,0.192229323691076,0.259125815764664,0.199780931006561,0.112141771333522,0.110173605842676,0,0.177778711459279,0.141145253644615,0,0.0893741091821246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325880249222541,0.398043506535903,0,0,0,0,0,0,0,0,0,0,0,0.121008441369486,0,0,0,0,0,0.367753944609732,0.242861776507364,0.159585615253267,0.112371000179637,0.162278901062865,0.140386497797093,0.237309301365803,0.183087496210002,0.0596340098159245,0,0,1.01538871924657,0.0359522460741798,0.0528318955547673,0.149989869616679,0.273776089422403,0.441217467993999,0.580886290345964,0.440975900005688,0,0,0,0,0,0,0,0,0.236171262379892,0.164538360789739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0428882730496471,0.054943952156948,0.034489466458534,0.100975358632432,0.0765177418984193,0,0,0,0,0,0,0,0,0,0,0,0.054962990285351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379358589281386,0.376754964798171,0.424496055335199,0.585145732503103,0.300699880676714,0.399810008829701,0.224020645200257,0.395499166636056,0.410954935295049,0.308675506925909,0,0,0.034229042449623,0,0,0,0,0,0,0.0489230553888678,0,0,0.0745542549075041,0.0523284672130554,0.0242538736058389,0,0.0452645736210068,0.03830369771457,0,0,0,0.0709519923534245,0,0.0294684307081759,0.0390607415003592,0.0339498293155746,0,0,0.0276517186754466,0,0.0243442052522616,0.0408018333703219,0,0.0625582350728301,0,0,0.0456455446387725,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0.125727960712818,0.0455894054315693,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0834533319011762,0,0,0.145411995067922,0.0896964873768703,0,0,0,0.0755555083173967,0,0.0434877098916977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0400093965272457,0.18440492317299,0,0,0,0,0,0,0,0,0,0,0.050354161091433,0.109123086691028,0.12277748593221,0,0.0198746585451445,0,0.505464404962115,0.441094405811093,0.573761976486374,0.123224102318956,0.176810392371935,0.0910522389263605,0.325665874540913,0.387626206214038,0.463739992732168,0.334151889143925,0.350443038236559,0,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0.82667432380898,0.5954765028743,0.620997582955309,0.60942017110563,0.953566003289279,0.844913367525133,1.02597122581686,0,0,0,0,0,0,0,0.336684465725675,0.351591407788256,0.098801861608942,0,0,0,0.161179842546876,0.375206552143423,0.138922288373465,0.325071741860858,0.325564651783995,0.280983247977995,0.295225594521175,0,0,0,0.0829439327499637,0,0,0,0.0876889746819101,0.0912850895577325,0.116017654526984,0.197359136203057,0.21528594805925,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427171743726688,0.116844694267823,0.0619941838335705,0,0,0,0,0,0.0872055405749939,0.0756292965920817,0.192229323691076,0.259125815764664,0.199780931006561,0.112141771333522,0.110173605842676,0,0.177778711459279,0.141145253644615,0,0.0893741091821246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325880249222541,0.398043506535903,0,0,0,0,0,0,0,0,0,0,0,0.121008441369486,0,0,0,0,0,0.367753944609732,0.242861776507364,0.159585615253267,0.112371000179637,0.162278901062865,0.140386497797093,0.237309301365803,0.183087496210002,0.0596340098159245,0,0,1.01538871924657,0.0359522460741798,0.0528318955547673,0.149989869616679,0.273776089422403,0.441217467993999,0.580886290345964,0.440975900005688,0,0,0,0,0,0,0,0,0.236171262379892,0.164538360789739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0428882730496471,0.054943952156948,0.034489466458534,0.100975358632432,0.0765177418984193,0,0,0,0,0,0,0,0,0,0,0,0.054962990285351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379358589281386,0.376754964798171,0.424496055335199,0.585145732503103,0.300699880676714,0.399810008829701,0.224020645200257,0.395499166636056,0.410954935295049,0.308675506925909,0,0,0.034229042449623,0,0,0,0,0,0,0.0489230553888678,0,0,0.0745542549075041,0.0523284672130554,0.0242538736058389,0,0.0452645736210068,0.03830369771457,0,0,0,0.0709519923534245,0,0.0294684307081759,0.0390607415003592,0.0339498293155746,0,0,0.0276517186754466,0,0.0243442052522616,0.0408018333703219,0,0.0625582350728301,0,0,0.0456455446387725,0,0,0,0
|gostat_on_MCL_coexpression=GO:0005615;extracellular space;0.0457800511785315;12653,12652!GO:0044421;extracellular region part;0.0457800511785315;12653,12652!
|gostat_on_MCL_coexpression=GO:0005615;extracellular space;0.0457800511785315;12653,12652!GO:0044421;extracellular region part;0.0457800511785315;12653,12652!
|ontology_enrichment_celltype=CL:0000117!3.36e-07!23;CL:0000337!3.36e-07!23
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!5.78e-26!54;UBERON:0001049!9.79e-24!52;UBERON:0005068!9.79e-24!52;UBERON:0006241!9.79e-24!52;UBERON:0007135!9.79e-24!52;UBERON:0002346!6.01e-23!64;UBERON:0003075!6.01e-23!64;UBERON:0007284!6.01e-23!64;UBERON:0000955!1.08e-21!47;UBERON:0006238!1.08e-21!47;UBERON:0002616!3.88e-21!46;UBERON:0003056!2.02e-20!49;UBERON:0003080!1.97e-19!40;UBERON:0002780!8.04e-19!39;UBERON:0001890!8.04e-19!39;UBERON:0006240!8.04e-19!39;UBERON:0001017!1.04e-18!73;UBERON:0010314!1.77e-18!92;UBERON:0010371!5.93e-18!73;UBERON:0001016!9.58e-18!75;UBERON:0004121!4.52e-15!95;UBERON:0000924!4.52e-15!95;UBERON:0006601!4.52e-15!95;UBERON:0002020!9.67e-14!34;UBERON:0003528!5.52e-12!29;UBERON:0002791!5.52e-12!29;UBERON:0001893!5.52e-12!29;UBERON:0002021!1.20e-09!10;UBERON:0000411!1.20e-09!10;UBERON:0001950!1.20e-09!10;UBERON:0002369!1.21e-08!7;UBERON:0006858!1.21e-08!7;UBERON:0001894!3.50e-08!10;UBERON:0006222!3.50e-08!10;UBERON:0002619!2.35e-07!17;UBERON:0000956!4.55e-07!21;UBERON:0001869!4.55e-07!21;UBERON:0000203!4.55e-07!21;UBERON:0000007!8.68e-07!8;UBERON:0003296!8.68e-07!8;UBERON:0010133!8.68e-07!8
}}
}}

Revision as of 20:51, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:97385255..97385260,-p@chr11:97385255..97385260
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Mm9::chr12:103793176..103793194,+p1@Chga
Mm9::chr12:103800161..103800196,-p@chr12:103800161..103800196
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Mm9::chr14:21216570..21216580,-p@chr14:21216570..21216580
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Mm9::chr17:87449988..87450015,-p@chr17:87449988..87450015
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Mm9::chr2:132607398..132607414,+p1@Chgb
Mm9::chr2:132618345..132618358,-p@chr2:132618345..132618358
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Mm9::chr2:132618359..132618393,-p@chr2:132618359..132618393
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Mm9::chr2:132618395..132618438,-p@chr2:132618395..132618438
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Mm9::chr2:132618548..132618617,-p@chr2:132618548..132618617
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Mm9::chr2:132618623..132618630,-p@chr2:132618623..132618630
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Mm9::chr2:132619066..132619119,-p@chr2:132619066..132619119
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Mm9::chr2:132619103..132619115,+p@chr2:132619103..132619115
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Mm9::chr2:132619265..132619276,-p@chr2:132619265..132619276
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005615extracellular space0.0457800511785315
GO:0044421extracellular region part0.0457800511785315



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)3.36e-0723
neuroblast (sensu Vertebrata)3.36e-0723

Uber Anatomy
Ontology termp-valuen
regional part of nervous system5.78e-2654
neural tube9.79e-2452
neural rod9.79e-2452
future spinal cord9.79e-2452
neural keel9.79e-2452
neurectoderm6.01e-2364
neural plate6.01e-2364
presumptive neural plate6.01e-2364
brain1.08e-2147
future brain1.08e-2147
regional part of brain3.88e-2146
pre-chordal neural plate2.02e-2049
anterior neural tube1.97e-1940
regional part of forebrain8.04e-1939
forebrain8.04e-1939
future forebrain8.04e-1939
central nervous system1.04e-1873
structure with developmental contribution from neural crest1.77e-1892
ecto-epithelium5.93e-1873
nervous system9.58e-1875
ectoderm-derived structure4.52e-1595
ectoderm4.52e-1595
presumptive ectoderm4.52e-1595
gray matter9.67e-1434
brain grey matter5.52e-1229
regional part of telencephalon5.52e-1229
telencephalon5.52e-1229
occipital lobe1.20e-0910
visual cortex1.20e-0910
neocortex1.20e-0910
adrenal gland1.21e-087
adrenal/interrenal gland1.21e-087
diencephalon3.50e-0810
future diencephalon3.50e-0810
regional part of cerebral cortex2.35e-0717
cerebral cortex4.55e-0721
cerebral hemisphere4.55e-0721
pallium4.55e-0721
pituitary gland8.68e-078
gland of diencephalon8.68e-078
neuroendocrine gland8.68e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}