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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126284745976325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106603619640227,0,0,0,0,0,0,0,0,0,0,0,0,0.0501827898833331,0,0,0.322458878535173,0.156601514237678,0.0620577069359474,0.0269013993396103,0.0554972478534854,0.182104477852721,0,0.260679637160558,0.20714756397787,0.137527281271869,0.284227537014196,0.0742309351586685,0,0,0.154563335474484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0,0,0.0347388317801137,0,0,0,0,0,0,0,0,0,0.0433296451889376,0,0,0,0.0186154382149816,0,0,0,0,0.24117949493311,0.328687801934592,0.191466791172533,0.359622918244653,0.443773638492404,0.286064465669323,0.329537978565126,0.0168427608921854,0,0,0.116729911747879,0.674764553267857,0.341339848682434,0.354192005629729,0.32153720818043,0.31394196553348,0.216058521173088,0.106420004350642,0.249469886918853,0.0847792561696249,0.0752205997629372,0.130945290313773,0,0.258384371590647,0,0.0406344227647811,0,0,0,0,0,0,0,0.0268140703079346,0,0,0,0,0,0,0,0,0,0,0,0.579934780737762,0.200766442673645,0,0,0,0,0,0.0797901069290224,0,0,0,0,0,0,0,0,0,0,0,0.046982063026719,0,0.0805006992779881,0,0.0540734946459608,0.210109087478591,0.112343641145276,0.269942095721096,0.135012912086457,0,0,0,0,0,0,0,0.054906696497384,0.0326283328848338,0,0,0.189507698950794,0,0.0489025419916185,0,0.085489078226422,0,0,0.147692316166937,0.175992571471672,0.401875756923569,0.413265002608332,0.362891450155956,0.258550606909982,0.934660571974262,1.03049244036358,0.967975748422059,0.123108665731713,0.128841727545421,0.15431220545931,0,0,0,0,0.0928000785788756,0.183647834491121,0,0,0,0.143151860801801,0.0423637962789889,0,0,0,0,0.111348509539896,0,0.254338300902001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451273693171932,0.102741208795199,0,0.0843392403965415,0.0709019855629759,0.101888556905493,0.14890250342523,0,0,0,0,0,0,0,0,0,0,0.192086593839265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.017244733229267,0,0,0,0,0,0,0.0385842034280588,0,0.0338991055318041,0.0240960234281546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556189773704561,0.594607568097192,0.58709079061676,0.810423857687107,0.596754691817313,0.673653467210757,0.604600756434686,0.540262897297426,0.589551351383981,0.481024023671719,0.0428854115575944,0.0729127179624205,0.176823627823539,0.0472542065752338,0,0,0.0871588832444397,0.115608096853184,0.168103334988355,0.211345905283526,0.138109243799297,0.19158416385364,0.180776354903225,0.141183443972418,0.146398255000324,0.084586381933092,0.179413081493513,0.248374712829307,0.074930558382725,0.135455788658115,0.251526324314157,0.158651849966934,0.092873634605593,0.303667330030359,0.159323681481746,0.222288719419243,0.189990830607665,0.218127658883024,0.181594003328742,0.193442483447008,0.177510604795289,0.126009132120275,0.148982201447044,0.0898938257864661,0.0708523502976075,0.0968441960560167,0.091291089277545,0,0,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!5.47e-18!64;UBERON:0003075!5.47e-18!64;UBERON:0007284!5.47e-18!64;UBERON:0003056!6.43e-18!49;UBERON:0010371!1.21e-13!73;UBERON:0000073!3.45e-13!54;UBERON:0001049!2.26e-12!52;UBERON:0005068!2.26e-12!52;UBERON:0006241!2.26e-12!52;UBERON:0007135!2.26e-12!52;UBERON:0003080!3.24e-12!40;UBERON:0000955!3.76e-12!47;UBERON:0006238!3.76e-12!47;UBERON:0002780!1.28e-11!39;UBERON:0001890!1.28e-11!39;UBERON:0006240!1.28e-11!39;UBERON:0002616!1.49e-11!46;UBERON:0004121!1.52e-10!95;UBERON:0000924!1.52e-10!95;UBERON:0006601!1.52e-10!95;UBERON:0002021!1.78e-10!10;UBERON:0000411!1.78e-10!10;UBERON:0001950!1.78e-10!10;UBERON:0001017!3.23e-10!73;UBERON:0001016!1.45e-09!75;UBERON:0002020!2.63e-09!34;UBERON:0003528!3.69e-09!29;UBERON:0002791!3.69e-09!29;UBERON:0001893!3.69e-09!29;UBERON:0010314!1.89e-08!92;UBERON:0002619!7.56e-08!17;UBERON:0002048!2.31e-07!14;UBERON:0000117!2.31e-07!14;UBERON:0000171!2.31e-07!14;UBERON:0000170!2.31e-07!14;UBERON:0005597!2.31e-07!14;UBERON:0000118!2.31e-07!14;UBERON:0000025!2.59e-07!114;UBERON:0000970!3.17e-07!9;UBERON:0000019!3.17e-07!9;UBERON:0000047!3.17e-07!9;UBERON:0010312!3.17e-07!9;UBERON:0004088!3.17e-07!9;UBERON:0002104!3.17e-07!9;UBERON:0001456!3.17e-07!9;UBERON:0003072!3.17e-07!9;UBERON:0004128!3.17e-07!9;UBERON:0003071!3.17e-07!9
}}
}}

Revision as of 21:34, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:28981461..28981512,+p1@Egfem1
Mm9::chr3:29008723..29008729,+p@chr3:29008723..29008729
+
Mm9::chr3:29053140..29053148,+p@chr3:29053140..29053148
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Mm9::chr3:29097690..29097692,+p@chr3:29097690..29097692
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Mm9::chr3:29134849..29134853,+p@chr3:29134849..29134853
+
Mm9::chr3:29159921..29159925,+p@chr3:29159921..29159925
+
Mm9::chr3:29276778..29276782,+p@chr3:29276778..29276782
+
Mm9::chr3:29440815..29440817,+p@chr3:29440815..29440817
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neurectoderm5.47e-1864
neural plate5.47e-1864
presumptive neural plate5.47e-1864
pre-chordal neural plate6.43e-1849
ecto-epithelium1.21e-1373
regional part of nervous system3.45e-1354
neural tube2.26e-1252
neural rod2.26e-1252
future spinal cord2.26e-1252
neural keel2.26e-1252
anterior neural tube3.24e-1240
brain3.76e-1247
future brain3.76e-1247
regional part of forebrain1.28e-1139
forebrain1.28e-1139
future forebrain1.28e-1139
regional part of brain1.49e-1146
ectoderm-derived structure1.52e-1095
ectoderm1.52e-1095
presumptive ectoderm1.52e-1095
occipital lobe1.78e-1010
visual cortex1.78e-1010
neocortex1.78e-1010
central nervous system3.23e-1073
nervous system1.45e-0975
gray matter2.63e-0934
brain grey matter3.69e-0929
regional part of telencephalon3.69e-0929
telencephalon3.69e-0929
structure with developmental contribution from neural crest1.89e-0892
regional part of cerebral cortex7.56e-0817
lung2.31e-0714
respiratory tube2.31e-0714
respiration organ2.31e-0714
pair of lungs2.31e-0714
lung primordium2.31e-0714
lung bud2.31e-0714
tube2.59e-07114
eye3.17e-079
camera-type eye3.17e-079
simple eye3.17e-079
immature eye3.17e-079
ocular region3.17e-079
visual system3.17e-079
face3.17e-079
optic cup3.17e-079
optic vesicle3.17e-079
eye primordium3.17e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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