Coexpression cluster:C4324: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280530873298471!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326699515187938!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323469124007985!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0321689694364654!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463911417006751!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167975492500545!FOS#2353;3:8.9979553088944:0.00137249927241713:0.0090005306738649!FOSL2#2355;3:16.9302006045617:0.000206016205317162:0.00243643148761398!FOXA1#3169;3:11.0814197493855:0.00073475527569867:0.00582842976140767!FOXA2#3170;3:24.6304637526652:6.68983856509345e-05:0.00107489238446122!GATA2#2624;3:12.744931733554:0.000482952770428379:0.00437991528228287!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.00435097269259446!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00392571695569796!HNF4A#3172;3:23.1322903629537:8.07584663437677e-05:0.00123164916274485!HNF4G#3174;3:28.7534225264468:4.20470658818262e-05:0.000758961893126866!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00445416187603491!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157247539120993!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0187106117418462!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00721909190586694!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295438938315704!NR3C1#2908;3:14.973023331173:0.000297833119467548:0.00309629635318249!PBX3#5090;3:21.9145126867441:9.49854535978121e-05:0.00137113832595742!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.0066652304185053!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.00165671940770107!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0277649909554233!SMARCB1#6598;3:18.2527157811574:0.00016439776067989:0.00203527000090648!SMARCC1#6599;3:43.6633593196315:1.20046018043203e-05:0.000302180912952858!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00310056295963411!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0247341774302795!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.00630541853313518!TCF7L2#6934;3:10.7701765631373:0.000800318129839838:0.00615995468806418!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.00248978117447717!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00617626873552761 | |tf_chipseq_enrich=CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280530873298471!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326699515187938!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323469124007985!EGR1#1958;3:4.98817909481014:0.00805648813738344:0.0321689694364654!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463911417006751!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167975492500545!FOS#2353;3:8.9979553088944:0.00137249927241713:0.0090005306738649!FOSL2#2355;3:16.9302006045617:0.000206016205317162:0.00243643148761398!FOXA1#3169;3:11.0814197493855:0.00073475527569867:0.00582842976140767!FOXA2#3170;3:24.6304637526652:6.68983856509345e-05:0.00107489238446122!GATA2#2624;3:12.744931733554:0.000482952770428379:0.00437991528228287!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.00435097269259446!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00392571695569796!HNF4A#3172;3:23.1322903629537:8.07584663437677e-05:0.00123164916274485!HNF4G#3174;3:28.7534225264468:4.20470658818262e-05:0.000758961893126866!JUN#3725;3:12.5128291923363:0.000510331399272625:0.00445416187603491!JUND#3727;3:6.99466394187103:0.00292184504273499:0.0157247539120993!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0187106117418462!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00721909190586694!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0295438938315704!NR3C1#2908;3:14.973023331173:0.000297833119467548:0.00309629635318249!PBX3#5090;3:21.9145126867441:9.49854535978121e-05:0.00137113832595742!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.0066652304185053!RXRA#6256;3:20.0746171391333:0.000123573034843222:0.00165671940770107!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0277649909554233!SMARCB1#6598;3:18.2527157811574:0.00016439776067989:0.00203527000090648!SMARCC1#6599;3:43.6633593196315:1.20046018043203e-05:0.000302180912952858!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00310056295963411!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0247341774302795!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.00630541853313518!TCF7L2#6934;3:10.7701765631373:0.000800318129839838:0.00615995468806418!TFAP2A#7020;3:16.518634373045:0.000221803388076634:0.00248978117447717!TFAP2C#7022;3:10.8092286098602:0.000791674657575313:0.00617626873552761 | ||
|tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.000333258,0.0102054,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.00465244,0.0415721,0.000119147,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.00226357,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.00115331,0.111283,0.121201,0.000689007,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.00151674,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.00408688,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.0693924,0.00201111,0.0857568,0.0495878,0.0953825,0.0473737,0.00375405,0.115028,0.0124566,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.000627743,0.0176855,0.000187023,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.000193634,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.013844,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.00239446,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.00428542,0.00027205,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,2.75598e-05,0.0799324,0.090079,0.140334,0.0176328,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.00127354,1.11098e-05,0.228812,7.73357e-06,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.00360981,0.27358,0.15185,0.206299,0.178359,0.0458667,0.000205471,0.121154,0.1129,0.0549274,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.0119362,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.0802194,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.219944,0.0381789,0.782949,0.0821962,0.051522,0.0986134,0.00690237,0.335423,0.0185583,0.00370732,0.446302,0.0120704,0.00641099,0.0313047,0.330703,0.395854,0.329568,0.0078057,0.0724671,0.271958,0.292154,0.0964816,0.0921263,0.581713,0.0643874,0.187251,0.0756284,0.181715,0.00249167,0.109988,0.330894,0.218329,0.427027,0.376924,0.129235,0.280025,0.0407001,0.520763,0.370782,0.415647,0.484505,0.253571,0.0424424,0.301787,0.481778,0.0565541,0.223503,0.0340949,0.0669244,0.283727,0.0557438,0.577664,0.0474194,0.448095,0.0115542,0.416816,0.292835,0.476744,0.439556,0.0120909,0.57762,0.608919,0.18237,0.346458,0.0964442,0.0133926,0.0419647,0.236471,0.185661,0.346319,0.0427964,0.270984,0.625945,0.00573308,0.513852,0.169228,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.176034,0.00029074,0.1002,0.00570056,0.546839,0.551561,0.448039,0.218623,0.312808,0.333034,0.0451077,0.0747529,0.0284893,0.00449125,0.0129683,0.154921,0.0484563,0.34331,0.138202,0.000431293,0.0077225,0.109738,0.278044,0.229008,0.108847,0.228096,0.336314,0.0209597,0.15631,0.20495,0.0182254,0.0293525,0.420626,0.165111,0.135248,0.0637439,0.144809,0.0111455,0.385517,0.001421,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.0460163,0.00541072,0.284593,0.0673219,0.306556,0.305777,0.601433,0.000782215,0.169823,0.284629,0.262537,0.359455,0.226257,0.405955,0.102469,0.363685,0.464871,0.0538047,0.206222,0.03988,0.651524,0.437176,0.269226,0.00872205,0.0014397,0.00470507,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.0397695,0.625309,0.347298,0.539392,0.0699395,0.0277379,0.404569,0.0847452,0.0793778,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.0270501,0.203656,0.00307017,0.0214618,0.191777,0.111931,0.28934,0.0435386,0.00601662,0.126478,0.134852,0.10689,0.273326,0.00201405,0.0842821,0.0179103,3.8523e-05,0.279795,0.0140073,0.0464827,0.00093131,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.062811,0.19559,0.132201,6.7436e-05,0.0481795,0.199971,0.0966069,0.00853267,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.0043762,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.00179985,0.153187,0.00327141,0.00490751,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.00662343,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,7.69244e-05,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.00335855,0.0254773,0.190048,0.00899422,0.394069,0.0306378,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.0538132,0.00502301,0.0473033,0.094881,0.022113,0.132886,0.0774373,0.109194,3.6677e-07,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.389379,0.00475792,0.0255266,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.00115086,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.0472142,0.0355833,0.125606,0.175094,0.696435,0.936279,0.00173453,0.00206897,0.108277,0.0673484,0.108748,0.0494066,0.00474777,0.205732,0.0755808,0.045654,0.110216,6.10604e-05,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.0203723,0.218271,0.000189228,0.00771936,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,3.81507e-05,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.00238639,0.251466,0.288096,0.11903,0.0838874,0.00806892,0.113145,0.112651,0.186638,0.01625,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.0149597,0.09066,0.0125264,0.166967,0.188651,0.00340589,0.184948,0.000720136,0.311847,0.0362615,0.0590944,0.247324,0.178389,0.218229,0.000161114,0.0972686,0.252227,0.0360851,0.0021796,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,1.82294e-05,0.231447,0.0455669,0.43956,0.37006,0.10748,0.00038176,0.197484,0.396996,0.36145,0.00202987,0.381071,0.580441,0.0863135,0.432035,0.366326,0.000164197,0.145312,0.50058,0.443185,0.522904,0.3468,0.0572701,0.227104,0.0380245,0.617852,0.000154756,0.0450114,0.0344717,0.55194,0.729153,0.28907,0.164197,0.462688,0.287881,0.0556235,0.478174,0.336276,0.468444,0.258219,0.0222932,0.243383,0.191695,0.390974,0.0458848,0.319063,0.161598,0.0527155,0.277094,0.00534461,0.799185,0.0805771,0.200632,0.477353,0.0201095,0.399222,0.000153842,1.5821e-07,0.200493,0.20558,0.00583368,0.25656,0.425963,0.349197,0.0131573,0.156104,0.141318,0.0168417,0.000159633,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.000219142,0.314429,0.181415,0.0442318,0.446891,0.616388,0.408413,0.0374737,0.322213,0.0234043,0.33942,0.61031,0.387276,0.522605,0.0248202,0.537348,0.222037,0.416621,0.0174635,0.462712,0.382478,0.057399,0.00169113,0.452428,0.138871,0.00105709,0.166905,0.19783,0.0833851,0.056391,0.0289164,0.0163316,0.332919,0.373557,0.523625,0.408861,0.365487,0.534741,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.0223007,0.0704514,0.00438156,0.269604,0.305885,0.241132,0.0118241,0.30666,0.303709,0.495883,0.386538,0.035296,0.250964,0.383276,0.125961,0.504711,0.220231,0.00608438,0.196976,0.191517,0.129584,5.68721e-06,0.307334,0.459728,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.138622,0.0105648,0.339729,0.197805,0.24107,0.387069,0.332774,0.0406989,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.0192444,0.00358475,0.188263,0.0719199,0.00386277,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.00221755,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.00632223,0.0173907,0.159884,0.00351525,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.00350063,0.222798,0.172134,0.176789,0.0969345,0.0219648,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.00132285,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.0687209,0.141729,0.263159,0.255956,0.200105,0.227491,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.00756988,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.000324864,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.0228361,0.361435 | |tfbs_overrepresentation=0.147255,0.0586687,0.35968,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.000333258,0.0102054,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.00465244,0.0415721,0.000119147,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.00226357,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.00115331,0.111283,0.121201,0.000689007,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.00151674,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.00408688,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.0693924,0.00201111,0.0857568,0.0495878,0.0953825,0.0473737,0.00375405,0.115028,0.0124566,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.000627743,0.0176855,0.000187023,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.000193634,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.013844,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.00239446,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.00428542,0.00027205,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,2.75598e-05,0.0799324,0.090079,0.140334,0.0176328,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.00127354,1.11098e-05,0.228812,7.73357e-06,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.00360981,0.27358,0.15185,0.206299,0.178359,0.0458667,0.000205471,0.121154,0.1129,0.0549274,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.0119362,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.0802194,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.219944,0.0381789,0.782949,0.0821962,0.051522,0.0986134,0.00690237,0.335423,0.0185583,0.00370732,0.446302,0.0120704,0.00641099,0.0313047,0.330703,0.395854,0.329568,0.0078057,0.0724671,0.271958,0.292154,0.0964816,0.0921263,0.581713,0.0643874,0.187251,0.0756284,0.181715,0.00249167,0.109988,0.330894,0.218329,0.427027,0.376924,0.129235,0.280025,0.0407001,0.520763,0.370782,0.415647,0.484505,0.253571,0.0424424,0.301787,0.481778,0.0565541,0.223503,0.0340949,0.0669244,0.283727,0.0557438,0.577664,0.0474194,0.448095,0.0115542,0.416816,0.292835,0.476744,0.439556,0.0120909,0.57762,0.608919,0.18237,0.346458,0.0964442,0.0133926,0.0419647,0.236471,0.185661,0.346319,0.0427964,0.270984,0.625945,0.00573308,0.513852,0.169228,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.176034,0.00029074,0.1002,0.00570056,0.546839,0.551561,0.448039,0.218623,0.312808,0.333034,0.0451077,0.0747529,0.0284893,0.00449125,0.0129683,0.154921,0.0484563,0.34331,0.138202,0.000431293,0.0077225,0.109738,0.278044,0.229008,0.108847,0.228096,0.336314,0.0209597,0.15631,0.20495,0.0182254,0.0293525,0.420626,0.165111,0.135248,0.0637439,0.144809,0.0111455,0.385517,0.001421,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.0460163,0.00541072,0.284593,0.0673219,0.306556,0.305777,0.601433,0.000782215,0.169823,0.284629,0.262537,0.359455,0.226257,0.405955,0.102469,0.363685,0.464871,0.0538047,0.206222,0.03988,0.651524,0.437176,0.269226,0.00872205,0.0014397,0.00470507,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.0397695,0.625309,0.347298,0.539392,0.0699395,0.0277379,0.404569,0.0847452,0.0793778,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.0270501,0.203656,0.00307017,0.0214618,0.191777,0.111931,0.28934,0.0435386,0.00601662,0.126478,0.134852,0.10689,0.273326,0.00201405,0.0842821,0.0179103,3.8523e-05,0.279795,0.0140073,0.0464827,0.00093131,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.062811,0.19559,0.132201,6.7436e-05,0.0481795,0.199971,0.0966069,0.00853267,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.0043762,0.00481323,0.0160457,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.00179985,0.153187,0.00327141,0.00490751,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.00662343,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,7.69244e-05,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.00335855,0.0254773,0.190048,0.00899422,0.394069,0.0306378,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.0538132,0.00502301,0.0473033,0.094881,0.022113,0.132886,0.0774373,0.109194,3.6677e-07,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.00447267,0.389379,0.00475792,0.0255266,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.00115086,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.0472142,0.0355833,0.125606,0.175094,0.696435,0.936279,0.00173453,0.00206897,0.108277,0.0673484,0.108748,0.0494066,0.00474777,0.205732,0.0755808,0.045654,0.110216,6.10604e-05,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.0203723,0.218271,0.000189228,0.00771936,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,3.81507e-05,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.00238639,0.251466,0.288096,0.11903,0.0838874,0.00806892,0.113145,0.112651,0.186638,0.01625,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.0149597,0.09066,0.0125264,0.166967,0.188651,0.00340589,0.184948,0.000720136,0.311847,0.0362615,0.0590944,0.247324,0.178389,0.218229,0.000161114,0.0972686,0.252227,0.0360851,0.0021796,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,1.82294e-05,0.231447,0.0455669,0.43956,0.37006,0.10748,0.00038176,0.197484,0.396996,0.36145,0.00202987,0.381071,0.580441,0.0863135,0.432035,0.366326,0.000164197,0.145312,0.50058,0.443185,0.522904,0.3468,0.0572701,0.227104,0.0380245,0.617852,0.000154756,0.0450114,0.0344717,0.55194,0.729153,0.28907,0.164197,0.462688,0.287881,0.0556235,0.478174,0.336276,0.468444,0.258219,0.0222932,0.243383,0.191695,0.390974,0.0458848,0.319063,0.161598,0.0527155,0.277094,0.00534461,0.799185,0.0805771,0.200632,0.477353,0.0201095,0.399222,0.000153842,1.5821e-07,0.200493,0.20558,0.00583368,0.25656,0.425963,0.349197,0.0131573,0.156104,0.141318,0.0168417,0.000159633,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.000219142,0.314429,0.181415,0.0442318,0.446891,0.616388,0.408413,0.0374737,0.322213,0.0234043,0.33942,0.61031,0.387276,0.522605,0.0248202,0.537348,0.222037,0.416621,0.0174635,0.462712,0.382478,0.057399,0.00169113,0.452428,0.138871,0.00105709,0.166905,0.19783,0.0833851,0.056391,0.0289164,0.0163316,0.332919,0.373557,0.523625,0.408861,0.365487,0.534741,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.0223007,0.0704514,0.00438156,0.269604,0.305885,0.241132,0.0118241,0.30666,0.303709,0.495883,0.386538,0.035296,0.250964,0.383276,0.125961,0.504711,0.220231,0.00608438,0.196976,0.191517,0.129584,5.68721e-06,0.307334,0.459728,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.138622,0.0105648,0.339729,0.197805,0.24107,0.387069,0.332774,0.0406989,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.0192444,0.00358475,0.188263,0.0719199,0.00386277,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.119514,0.179412,0.193601,0.220904,0.00221755,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.00632223,0.0173907,0.159884,0.00351525,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.00350063,0.222798,0.172134,0.176789,0.0969345,0.0219648,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.00132285,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.0687209,0.141729,0.263159,0.255956,0.200105,0.227491,0.00569858,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.00756988,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.000324864,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.0228361,0.361435 | ||
|tfbs_overrepresentation_for_novel_motifs=0.699513,0.14394,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,0.491742,1.84557,0.820209,2.25583,0.436625,2.13378,1.54465,0.667627,1.17594,0.575162,1.14835,0.824321,1.65118,0.242883,0.845342,0.635379,0.743951,1.00973,0.409304,3.25755,0.645155,0.388328,0.795576,1.21459,0.534793,0.439574,0.599922,0.843849,1.45286,0.855276,1.39264,0.469078,0.598234,0.777097,0.259059,0.63803,0.151453,0.726632,0.939121,0.808003,0.247669,0.645308,1.02504,0.951993,0.336258,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,0.891404,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,0.333216,1.45054,0.430728,1.06461,0.396746,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,0.507157,0.303648,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,1.54991,0.560075,1.14422,1.27663,1.05794,1.68795,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,1.7605,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,2.36218,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.372828,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,0.318511,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,2.24188,0.936473,0.0768232 | |||
}} | }} | ||
Revision as of 16:40, 26 November 2012
Full id: C4324_Endothelial_Lymphatic_Hepatic_Smooth_Neutrophils_adipose_breast
Phase1 CAGE Peaks
| Hg19::chr3:30647997..30648010,+ | p4@TGFBR2 |
| Hg19::chr3:30648011..30648061,+ | p2@TGFBR2 |
| Hg19::chr3:30648066..30648167,+ | p1@TGFBR2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| mesodermal cell | 8.24e-15 | 121 |
| endothelial cell of vascular tree | 8.90e-15 | 24 |
| endothelial cell | 1.01e-14 | 36 |
| blood vessel endothelial cell | 7.66e-11 | 18 |
| embryonic blood vessel endothelial progenitor cell | 7.66e-11 | 18 |
| meso-epithelial cell | 1.11e-10 | 45 |
| muscle precursor cell | 1.38e-10 | 58 |
| myoblast | 1.38e-10 | 58 |
| multi-potent skeletal muscle stem cell | 1.38e-10 | 58 |
| muscle cell | 1.45e-09 | 55 |
| contractile cell | 7.25e-09 | 59 |
| vascular associated smooth muscle cell | 1.58e-08 | 32 |
| smooth muscle cell | 1.17e-07 | 43 |
| smooth muscle myoblast | 1.17e-07 | 43 |
| embryonic cell | 3.61e-07 | 250 |
| lining cell | 6.55e-07 | 58 |
| barrier cell | 6.55e-07 | 58 |
| electrically responsive cell | 8.02e-07 | 61 |
| electrically active cell | 8.02e-07 | 61 |
| fat cell | 8.28e-07 | 15 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0280530873298471 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0326699515187938 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.0323469124007985 |
| EGR1#1958 | 3 | 4.98817909481014 | 0.00805648813738344 | 0.0321689694364654 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0463911417006751 |
| EP300#2033 | 3 | 6.7739417262232 | 0.00321688050010379 | 0.0167975492500545 |
| FOS#2353 | 3 | 8.9979553088944 | 0.00137249927241713 | 0.0090005306738649 |
| FOSL2#2355 | 3 | 16.9302006045617 | 0.000206016205317162 | 0.00243643148761398 |
| FOXA1#3169 | 3 | 11.0814197493855 | 0.00073475527569867 | 0.00582842976140767 |
| FOXA2#3170 | 3 | 24.6304637526652 | 6.68983856509345e-05 | 0.00107489238446122 |
| GATA2#2624 | 3 | 12.744931733554 | 0.000482952770428379 | 0.00437991528228287 |
| GTF2F1#2962 | 3 | 12.7396608767577 | 0.000483552504743859 | 0.00435097269259446 |
| HDAC2#3066 | 3 | 13.4156202366263 | 0.000414076139985721 | 0.00392571695569796 |
| HNF4A#3172 | 3 | 23.1322903629537 | 8.07584663437677e-05 | 0.00123164916274485 |
| HNF4G#3174 | 3 | 28.7534225264468 | 4.20470658818262e-05 | 0.000758961893126866 |
| JUN#3725 | 3 | 12.5128291923363 | 0.000510331399272625 | 0.00445416187603491 |
| JUND#3727 | 3 | 6.99466394187103 | 0.00292184504273499 | 0.0157247539120993 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0187106117418462 |
| MXI1#4601 | 3 | 9.9615716287593 | 0.00101147054125902 | 0.00721909190586694 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.0295438938315704 |
| NR3C1#2908 | 3 | 14.973023331173 | 0.000297833119467548 | 0.00309629635318249 |
| PBX3#5090 | 3 | 21.9145126867441 | 9.49854535978121e-05 | 0.00137113832595742 |
| RAD21#5885 | 3 | 10.3550338954563 | 0.000900491207356542 | 0.0066652304185053 |
| RXRA#6256 | 3 | 20.0746171391333 | 0.000123573034843222 | 0.00165671940770107 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0277649909554233 |
| SMARCB1#6598 | 3 | 18.2527157811574 | 0.00016439776067989 | 0.00203527000090648 |
| SMARCC1#6599 | 3 | 43.6633593196315 | 1.20046018043203e-05 | 0.000302180912952858 |
| SMC3#9126 | 3 | 15.0449328449328 | 0.000293582542037187 | 0.00310056295963411 |
| SP1#6667 | 3 | 5.6983813781409 | 0.00540396270171217 | 0.0247341774302795 |
| TCF12#6938 | 3 | 10.6344649021864 | 0.000831352399020207 | 0.00630541853313518 |
| TCF7L2#6934 | 3 | 10.7701765631373 | 0.000800318129839838 | 0.00615995468806418 |
| TFAP2A#7020 | 3 | 16.518634373045 | 0.000221803388076634 | 0.00248978117447717 |
| TFAP2C#7022 | 3 | 10.8092286098602 | 0.000791674657575313 | 0.00617626873552761 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
