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MCL coexpression mm9:817: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!6.26e-16!64;UBERON:0003075!6.26e-16!64;UBERON:0007284!6.26e-16!64;UBERON:0000073!1.74e-15!54;UBERON:0010371!3.48e-15!73;UBERON:0001049!1.63e-14!52;UBERON:0005068!1.63e-14!52;UBERON:0006241!1.63e-14!52;UBERON:0007135!1.63e-14!52;UBERON:0004121!5.84e-14!95;UBERON:0000924!5.84e-14!95;UBERON:0006601!5.84e-14!95;UBERON:0001017!6.42e-13!73;UBERON:0003056!8.96e-13!49;UBERON:0001016!2.83e-12!75;UBERON:0000955!4.17e-12!47;UBERON:0006238!4.17e-12!47;UBERON:0002616!1.73e-11!46;UBERON:0002020!1.95e-11!34;UBERON:0003080!1.37e-10!40;UBERON:0000468!1.48e-10!333;UBERON:0010314!2.37e-10!92;UBERON:0002780!4.44e-10!39;UBERON:0001890!4.44e-10!39;UBERON:0006240!4.44e-10!39;UBERON:0003528!6.62e-09!29;UBERON:0002791!6.62e-09!29;UBERON:0001893!6.62e-09!29;UBERON:0002021!5.82e-08!10;UBERON:0000411!5.82e-08!10;UBERON:0001950!5.82e-08!10;UBERON:0000479!2.39e-07!349;UBERON:0002048!3.48e-07!14;UBERON:0000117!3.48e-07!14;UBERON:0000171!3.48e-07!14;UBERON:0000170!3.48e-07!14;UBERON:0005597!3.48e-07!14;UBERON:0000118!3.48e-07!14;UBERON:0000922!4.96e-07!320;UBERON:0000956!5.04e-07!21;UBERON:0001869!5.04e-07!21;UBERON:0000203!5.04e-07!21;UBERON:0002619!9.02e-07!17
|ontology_enrichment_uberon=UBERON:0002346!6.26e-16!64;UBERON:0003075!6.26e-16!64;UBERON:0007284!6.26e-16!64;UBERON:0000073!1.74e-15!54;UBERON:0010371!3.48e-15!73;UBERON:0001049!1.63e-14!52;UBERON:0005068!1.63e-14!52;UBERON:0006241!1.63e-14!52;UBERON:0007135!1.63e-14!52;UBERON:0004121!5.84e-14!95;UBERON:0000924!5.84e-14!95;UBERON:0006601!5.84e-14!95;UBERON:0001017!6.42e-13!73;UBERON:0003056!8.96e-13!49;UBERON:0001016!2.83e-12!75;UBERON:0000955!4.17e-12!47;UBERON:0006238!4.17e-12!47;UBERON:0002616!1.73e-11!46;UBERON:0002020!1.95e-11!34;UBERON:0003080!1.37e-10!40;UBERON:0000468!1.48e-10!333;UBERON:0010314!2.37e-10!92;UBERON:0002780!4.44e-10!39;UBERON:0001890!4.44e-10!39;UBERON:0006240!4.44e-10!39;UBERON:0003528!6.62e-09!29;UBERON:0002791!6.62e-09!29;UBERON:0001893!6.62e-09!29;UBERON:0002021!5.82e-08!10;UBERON:0000411!5.82e-08!10;UBERON:0001950!5.82e-08!10;UBERON:0000479!2.39e-07!349;UBERON:0002048!3.48e-07!14;UBERON:0000117!3.48e-07!14;UBERON:0000171!3.48e-07!14;UBERON:0000170!3.48e-07!14;UBERON:0005597!3.48e-07!14;UBERON:0000118!3.48e-07!14;UBERON:0000922!4.96e-07!320;UBERON:0000956!5.04e-07!21;UBERON:0001869!5.04e-07!21;UBERON:0000203!5.04e-07!21;UBERON:0002619!9.02e-07!17
|tfbs_overrepresentation_for_novel_motifs=0.93395,0.706384,0.879518,0.394491,0.227651,0.40827,0.495658,0.448965,0.154135,0.573183,0.453212,0.484001,0.88117,0.507558,0.680035,0,0.696644,0.62892,0.134657,0.528436,0.296085,0.179861,0.50668,0.226287,0.337218,0.534339,0.128175,0.428336,0.268347,1.09271,0.414842,0.796599,0.218674,0.364174,1.95748,0.137663,3.32563,0.480503,0.191662,0.967553,0.224094,0.419787,0.163087,0.684206,2.40772,0.383899,0.618203,0.443479,0.133514,0.271021,0.679429,0.560572,1.05886,0.937018,0.954342,0.514504,0.279148,0.471658,0.12126,0.512521,0.776777,0.569793,0.163832,0.668331,2.24453,0.708248,1.08987,1.43807,0.772155,1.29123,0.840217,0.151245,1.60811,0.987652,1.7889,0.107966,0.113315,0.607043,0.759798,0.299972,0.152219,2.85165,0.568383,0.14134,0.873141,12.9389,0.231102,0.657454,0.623015,1.60001,1.15927,0.878077,0.809272,0.232894,0.551605,0.17334,0.14449,0.812053,0.618454,1.47057,0.210602,0.796322,0.919715,0.680015,0.678976,1.07585,0.737915,0.439611,0.30446,0.297733,0.348012,0.921485,2.25476,0.458194,1.16629,0.222515,2.04793,0.398075,0.697928,0.207304,0.993019,0.647706,0.536114,0.606154,1.22022,0.763454,0.503569,0.802564,1.08836,0.235546,0.90286,0.387557,1.05894,0.527782,1.18781,0.177062,0.362565,0.421136,1.13883,1.96797,1.5682,1.09456,0.547855,0.806961,0.672593,0.420221,0.621266,1.92834,0.956381,1.2115,1.10522,0.659481,0.938577,0.527659,0.526881,1.01974,0.561556,0.253271,0.352329,0.362302,1.1483,0.872292,0.763895,0.345891,0.669337,0.519673,0.209556,0.482466,0.976805
}}
}}

Revision as of 18:57, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:69100486..69100490,-p@chr13:69100486..69100490
-
Mm9::chr13:69138160..69138214,-p3@Adcy2
Mm9::chr13:69138284..69138335,-p1@Adcy2
Mm9::chr13:69138396..69138443,-p2@Adcy2
Mm9::chr3:26052336..26052388,-p2@Nlgn1
Mm9::chr4:128331930..128331973,+p3@Phc2
Mm9::chr5:128938926..128938955,-p1@Tmem132d
Mm9::chr9:36954842..36954908,-p1@Pknox2
Mm9::chr9:51573430..51573469,+p1@Arhgap20


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
neurectoderm6.26e-1664
neural plate6.26e-1664
presumptive neural plate6.26e-1664
regional part of nervous system1.74e-1554
ecto-epithelium3.48e-1573
neural tube1.63e-1452
neural rod1.63e-1452
future spinal cord1.63e-1452
neural keel1.63e-1452
ectoderm-derived structure5.84e-1495
ectoderm5.84e-1495
presumptive ectoderm5.84e-1495
central nervous system6.42e-1373
pre-chordal neural plate8.96e-1349
nervous system2.83e-1275
brain4.17e-1247
future brain4.17e-1247
regional part of brain1.73e-1146
gray matter1.95e-1134
anterior neural tube1.37e-1040
multi-cellular organism1.48e-10333
structure with developmental contribution from neural crest2.37e-1092
regional part of forebrain4.44e-1039
forebrain4.44e-1039
future forebrain4.44e-1039
brain grey matter6.62e-0929
regional part of telencephalon6.62e-0929
telencephalon6.62e-0929
occipital lobe5.82e-0810
visual cortex5.82e-0810
neocortex5.82e-0810
tissue2.39e-07349
lung3.48e-0714
respiratory tube3.48e-0714
respiration organ3.48e-0714
pair of lungs3.48e-0714
lung primordium3.48e-0714
lung bud3.48e-0714
embryo4.96e-07320
cerebral cortex5.04e-0721
cerebral hemisphere5.04e-0721
pallium5.04e-0721
regional part of cerebral cortex9.02e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}