FFCP PHASE1:Hg19::chr10:48439197..48439208,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2662|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4215|TSSclassifier=S|UniProt=|association_with_transcript=-31bp_to_uc001jfb.2,uc009xnp.2,uc009xnq.1_5end|coexpression_cluster_id=C152|description=CAGE_peak_3_at_GDF10_5end|id=chr10:48439197..48439208,-|ontology_enrichment_celltype=CL:0002603!5.99e-09!3;CL:0000064!6.51e-08!3;CL:0005012!6.51e-08!3;CL:0000067!6.51e-08!3;CL:0002304!6.51e-08!3|ontology_enrichment_celltype_v019=CL:0002603;1.47e-30;3!CL:0000128;1.02e-13;7!CL:0000126;1.02e-13;7!CL:0000127;1.02e-13;7!CL:0000064;1.30e-08;3!CL:0000067;1.30e-08;3!CL:0005012;1.30e-08;3!CL:0002304;1.30e-08;3|ontology_enrichment_celltype_v019_2=CL:0002603,1.47e-30,3;CL:0000128,1.02e-13,7;CL:0000126,1.02e-13,7;CL:0000127,1.02e-13,7;CL:0002453,1.02e-13,7;CL:0000064,1.40e-08,3;CL:0000067,1.40e-08,3;CL:0005012,1.40e-08,3;CL:0002304,1.40e-08,3|ontology_enrichment_development_v019=UBERON:0010115;4.10e-23;1!UBERON:0006215;1.30e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:171;7.74e-10;10|ontology_enrichment_disease_v019_2=DOID:171,8.46e-10,10|ontology_enrichment_uberon=UBERON:0002346!3.34e-33!90;UBERON:0007023!6.69e-32!115;UBERON:0002616!9.38e-32!59;UBERON:0001049!7.15e-31!57;UBERON:0005068!7.15e-31!57;UBERON:0006241!7.15e-31!57;UBERON:0007135!7.15e-31!57;UBERON:0003075!3.60e-29!86;UBERON:0007284!3.60e-29!86;UBERON:0000955!3.32e-27!69;UBERON:0006238!3.32e-27!69;UBERON:0003080!4.61e-27!42;UBERON:0003056!1.05e-25!61;UBERON:0002780!3.28e-25!41;UBERON:0001890!3.28e-25!41;UBERON:0006240!3.28e-25!41;UBERON:0005743!1.99e-23!86;UBERON:0001017!2.64e-23!82;UBERON:0000153!4.34e-23!129;UBERON:0007811!4.34e-23!129;UBERON:0000033!5.97e-22!123;UBERON:0001893!1.60e-20!34;UBERON:0000073!2.43e-20!94;UBERON:0001016!2.43e-20!94;UBERON:0002791!3.78e-19!33;UBERON:0001950!6.53e-18!20;UBERON:0001869!1.37e-17!32;UBERON:0000924!2.03e-17!173;UBERON:0006601!2.03e-17!173;UBERON:0002020!1.79e-16!34;UBERON:0003528!1.79e-16!34;UBERON:0002619!4.76e-16!22;UBERON:0004121!6.64e-15!169;UBERON:0000956!8.47e-14!25;UBERON:0000203!8.47e-14!25;UBERON:0000200!8.67e-13!6;UBERON:0002037!2.30e-11!6;UBERON:0006215!2.30e-11!6;UBERON:0000025!1.03e-08!194;UBERON:0000477!3.68e-08!286;UBERON:0001778!6.51e-08!3;UBERON:0001775!6.51e-08!3;UBERON:0002021!9.85e-08!5;UBERON:0000483!2.04e-07!309;UBERON:0002680!2.19e-07!9;UBERON:0001895!2.19e-07!9;UBERON:0010092!2.19e-07!9;UBERON:0004111!2.25e-07!241;UBERON:0000119!3.11e-07!312;UBERON:0000064!3.22e-07!219;UBERON:0004733!3.31e-07!12;UBERON:0002028!3.31e-07!12;UBERON:0007277!3.31e-07!12;UBERON:0000481!3.99e-07!347;UBERON:0000475!4.55e-07!365;UBERON:0002771!9.21e-07!3|ontology_enrichment_uberon_v019=UBERON:0002037;1.05e-33;6!UBERON:0002363;4.10e-23;1!UBERON:0002346;4.60e-23;4!UBERON:0000923;4.60e-23;4!UBERON:0010316;4.60e-23;4!UBERON:0005291;4.60e-23;4!UBERON:0002680;9.35e-23;9!UBERON:0001895;9.35e-23;9!UBERON:0002050;1.13e-18;5!UBERON:0005423;1.13e-18;5!UBERON:0004733;2.91e-17;12!UBERON:0002028;2.91e-17;12!UBERON:0004732;5.42e-16;13!UBERON:0001905;2.07e-12;2!UBERON:0002757;2.07e-12;2!UBERON:0010134;2.07e-12;2!UBERON:0005408;2.07e-12;2!UBERON:0001899;2.07e-12;2!UBERON:0002360;2.90e-12;2!UBERON:0000094;2.90e-12;2!UBERON:0010743;2.90e-12;2!UBERON:0001778;1.30e-08;3!UBERON:0001775;1.30e-08;3!UBERON:0003296;7.69e-07;4!UBERON:0010133;7.69e-07;4!UBERON:0002784;7.69e-07;4!UBERON:0000488;9.10e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.05e-33,6;UBERON:0006215,1.05e-33,6;UBERON:0002363,3.28e-23,1;UBERON:0007645,3.28e-23,1;UBERON:0007647,3.28e-23,1;UBERON:0010115,3.28e-23,1;UBERON:0002680,9.35e-23,9;UBERON:0001895,9.35e-23,9;UBERON:0010092,9.35e-23,9;UBERON:0004733,2.91e-17,12;UBERON:0002028,2.91e-17,12;UBERON:0007277,2.91e-17,12;UBERON:0004732,5.42e-16,13;UBERON:0003076,5.89e-14,15;UBERON:0003057,5.89e-14,15;UBERON:0001905,2.07e-12,2;UBERON:0002757,2.07e-12,2;UBERON:0010134,2.07e-12,2;UBERON:0005408,2.07e-12,2;UBERON:0001899,2.07e-12,2;UBERON:0002360,2.59e-12,2;UBERON:0000094,2.59e-12,2;UBERON:0010743,2.59e-12,2;UBERON:0002346,2.65e-12,86;UBERON:0001778,1.40e-08,3;UBERON:0001775,1.40e-08,3;UBERON:0004121,7.05e-08,171;UBERON:0000924,7.05e-08,171;UBERON:0006601,7.05e-08,171;UBERON:0000073,6.11e-07,53;UBERON:0002616,6.11e-07,53;UBERON:0003296,7.70e-07,4;UBERON:0010133,7.70e-07,4;UBERON:0002784,7.70e-07,4;UBERON:0001017,8.18e-07,81;UBERON:0003075,8.39e-07,82;UBERON:0007284,8.39e-07,82;UBERON:0000488,9.63e-07,4|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80172126499473,0.612002073732759,5.32873026512749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,1.10864698731282,0.43917392846563,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2662 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4215 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-31bp_to_uc001jfb.2,uc009xnp.2,uc009xnq.1_5end | |||
|coexpression_cluster_id=C152 | |||
|description=CAGE_peak_3_at_GDF10_5end | |||
|id=chr10:48439197..48439208,- | |||
|ontology_enrichment_celltype=CL:0002603!5.99e-09!3;CL:0000064!6.51e-08!3;CL:0005012!6.51e-08!3;CL:0000067!6.51e-08!3;CL:0002304!6.51e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002603;1.47e-30;3!CL:0000128;1.02e-13;7!CL:0000126;1.02e-13;7!CL:0000127;1.02e-13;7!CL:0000064;1.30e-08;3!CL:0000067;1.30e-08;3!CL:0005012;1.30e-08;3!CL:0002304;1.30e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002603,1.47e-30,3;CL:0000128,1.02e-13,7;CL:0000126,1.02e-13,7;CL:0000127,1.02e-13,7;CL:0002453,1.02e-13,7;CL:0000064,1.40e-08,3;CL:0000067,1.40e-08,3;CL:0005012,1.40e-08,3;CL:0002304,1.40e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0010115;4.10e-23;1!UBERON:0006215;1.30e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;7.74e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.46e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0002346!3.34e-33!90;UBERON:0007023!6.69e-32!115;UBERON:0002616!9.38e-32!59;UBERON:0001049!7.15e-31!57;UBERON:0005068!7.15e-31!57;UBERON:0006241!7.15e-31!57;UBERON:0007135!7.15e-31!57;UBERON:0003075!3.60e-29!86;UBERON:0007284!3.60e-29!86;UBERON:0000955!3.32e-27!69;UBERON:0006238!3.32e-27!69;UBERON:0003080!4.61e-27!42;UBERON:0003056!1.05e-25!61;UBERON:0002780!3.28e-25!41;UBERON:0001890!3.28e-25!41;UBERON:0006240!3.28e-25!41;UBERON:0005743!1.99e-23!86;UBERON:0001017!2.64e-23!82;UBERON:0000153!4.34e-23!129;UBERON:0007811!4.34e-23!129;UBERON:0000033!5.97e-22!123;UBERON:0001893!1.60e-20!34;UBERON:0000073!2.43e-20!94;UBERON:0001016!2.43e-20!94;UBERON:0002791!3.78e-19!33;UBERON:0001950!6.53e-18!20;UBERON:0001869!1.37e-17!32;UBERON:0000924!2.03e-17!173;UBERON:0006601!2.03e-17!173;UBERON:0002020!1.79e-16!34;UBERON:0003528!1.79e-16!34;UBERON:0002619!4.76e-16!22;UBERON:0004121!6.64e-15!169;UBERON:0000956!8.47e-14!25;UBERON:0000203!8.47e-14!25;UBERON:0000200!8.67e-13!6;UBERON:0002037!2.30e-11!6;UBERON:0006215!2.30e-11!6;UBERON:0000025!1.03e-08!194;UBERON:0000477!3.68e-08!286;UBERON:0001778!6.51e-08!3;UBERON:0001775!6.51e-08!3;UBERON:0002021!9.85e-08!5;UBERON:0000483!2.04e-07!309;UBERON:0002680!2.19e-07!9;UBERON:0001895!2.19e-07!9;UBERON:0010092!2.19e-07!9;UBERON:0004111!2.25e-07!241;UBERON:0000119!3.11e-07!312;UBERON:0000064!3.22e-07!219;UBERON:0004733!3.31e-07!12;UBERON:0002028!3.31e-07!12;UBERON:0007277!3.31e-07!12;UBERON:0000481!3.99e-07!347;UBERON:0000475!4.55e-07!365;UBERON:0002771!9.21e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;1.05e-33;6!UBERON:0002363;4.10e-23;1!UBERON:0002346;4.60e-23;4!UBERON:0000923;4.60e-23;4!UBERON:0010316;4.60e-23;4!UBERON:0005291;4.60e-23;4!UBERON:0002680;9.35e-23;9!UBERON:0001895;9.35e-23;9!UBERON:0002050;1.13e-18;5!UBERON:0005423;1.13e-18;5!UBERON:0004733;2.91e-17;12!UBERON:0002028;2.91e-17;12!UBERON:0004732;5.42e-16;13!UBERON:0001905;2.07e-12;2!UBERON:0002757;2.07e-12;2!UBERON:0010134;2.07e-12;2!UBERON:0005408;2.07e-12;2!UBERON:0001899;2.07e-12;2!UBERON:0002360;2.90e-12;2!UBERON:0000094;2.90e-12;2!UBERON:0010743;2.90e-12;2!UBERON:0001778;1.30e-08;3!UBERON:0001775;1.30e-08;3!UBERON:0003296;7.69e-07;4!UBERON:0010133;7.69e-07;4!UBERON:0002784;7.69e-07;4!UBERON:0000488;9.10e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.05e-33,6;UBERON:0006215,1.05e-33,6;UBERON:0002363,3.28e-23,1;UBERON:0007645,3.28e-23,1;UBERON:0007647,3.28e-23,1;UBERON:0010115,3.28e-23,1;UBERON:0002680,9.35e-23,9;UBERON:0001895,9.35e-23,9;UBERON:0010092,9.35e-23,9;UBERON:0004733,2.91e-17,12;UBERON:0002028,2.91e-17,12;UBERON:0007277,2.91e-17,12;UBERON:0004732,5.42e-16,13;UBERON:0003076,5.89e-14,15;UBERON:0003057,5.89e-14,15;UBERON:0001905,2.07e-12,2;UBERON:0002757,2.07e-12,2;UBERON:0010134,2.07e-12,2;UBERON:0005408,2.07e-12,2;UBERON:0001899,2.07e-12,2;UBERON:0002360,2.59e-12,2;UBERON:0000094,2.59e-12,2;UBERON:0010743,2.59e-12,2;UBERON:0002346,2.65e-12,86;UBERON:0001778,1.40e-08,3;UBERON:0001775,1.40e-08,3;UBERON:0004121,7.05e-08,171;UBERON:0000924,7.05e-08,171;UBERON:0006601,7.05e-08,171;UBERON:0000073,6.11e-07,53;UBERON:0002616,6.11e-07,53;UBERON:0003296,7.70e-07,4;UBERON:0010133,7.70e-07,4;UBERON:0002784,7.70e-07,4;UBERON:0001017,8.18e-07,81;UBERON:0003075,8.39e-07,82;UBERON:0007284,8.39e-07,82;UBERON:0000488,9.63e-07,4 | |||
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|short_description=p3@GDF10 | |||
}} |
Revision as of 13:31, 10 September 2013
Short description: | p3@GDF10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_GDF10_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -31bp_to_uc001jfb.2, uc009xnp.2, uc009xnq.1_5end |
EntrezGene: | GDF10 |
HGNC: | 4215 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebellum | 1.47e-30 | 3 |
oligodendrocyte | 1.02e-13 | 7 |
macroglial cell | 1.02e-13 | 7 |
astrocyte | 1.02e-13 | 7 |
oligodendrocyte precursor cell | 1.02e-13 | 7 |
ciliated cell | 1.40e-08 | 3 |
ciliated epithelial cell | 1.40e-08 | 3 |
multi-ciliated epithelial cell | 1.40e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.40e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.46e-10 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.