FFCP PHASE1:Hg19::chr18:18822185..18822213,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80000|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=31042|TSSclassifier=S|UniProt=Q9C091,B4DDS9|association_with_transcript=0bp_to_ENST00000269218,ENST00000400483,ENST00000424526,ENST00000431264,NM_001142966,uc002ktf.1,uc010dlp.1,uc010xam.1_5end|coexpression_cluster_id=C83|description=CAGE_peak_1_at_GREB1L_5end|id=chr18:18822185..18822213,+|ontology_enrichment_celltype=CL:0000066!3.03e-14!254|ontology_enrichment_celltype_v019=CL:0000136;3.08e-08;13!CL:0000349;3.20e-07;19|ontology_enrichment_celltype_v019_2=CL:0000066,8.50e-09,253;CL:0000349,2.75e-07,19|ontology_enrichment_development_v019=UBERON:0003104;4.37e-07;31|ontology_enrichment_disease=DOID:305!9.20e-13!106;DOID:0050687!3.61e-11!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,1.95e-12,106;DOID:0050687,8.25e-11,143|ontology_enrichment_uberon_v019=UBERON:0001893;1.80e-08;34!UBERON:0003528;2.54e-08;34!UBERON:0002020;2.54e-08;34!UBERON:0000073;3.59e-08;53!UBERON:0002616;3.59e-08;53!UBERON:0002791;4.32e-08;32!UBERON:0001869;9.86e-08;32!UBERON:0005631;1.09e-07;10!UBERON:0000158;1.09e-07;10!UBERON:0002780;1.75e-07;41!UBERON:0001890;1.75e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.05e-13,56;UBERON:0005068,2.05e-13,56;UBERON:0006241,2.05e-13,56;UBERON:0007135,2.05e-13,56;UBERON:0000073,6.95e-13,53;UBERON:0002616,6.95e-13,53;UBERON:0007023,1.66e-10,114;UBERON:0003075,2.73e-10,82;UBERON:0007284,2.73e-10,82;UBERON:0000955,5.06e-10,68;UBERON:0006238,5.06e-10,68;UBERON:0005631,6.93e-10,14;UBERON:0000158,6.93e-10,14;UBERON:0003528,1.16e-09,34;UBERON:0002020,1.16e-09,34;UBERON:0001893,2.68e-09,34;UBERON:0002780,3.23e-09,41;UBERON:0001890,3.23e-09,41;UBERON:0003080,3.23e-09,41;UBERON:0006240,3.23e-09,41;UBERON:0002346,5.81e-09,86;UBERON:0002791,9.55e-09,32;UBERON:0001869,1.93e-08,32;UBERON:0001017,5.30e-08,81;UBERON:0001016,9.22e-08,89;UBERON:0011216,2.34e-07,223;UBERON:0002417,2.61e-07,60;UBERON:0000916,2.61e-07,60;UBERON:0005156,2.65e-07,59;UBERON:0000990,2.65e-07,59;UBERON:0003133,3.18e-07,48;UBERON:0010371,7.85e-07,104;UBERON:0002323,8.98e-07,46|phase1_expression=14.5342703416445,6.42301571672949,26.2175191618506,8.00586386825043,14.7497161161005,9.59572376510406,5.06599756336621,1.26343974685366,3.65659879479774,0.982935746006035,0.697801167972428,24.028550934319,9.75937819445278,0.247532705920093,0.994192127183747,0,0,0,0,11.3271373430645,3.26401105990805,6.26909442956176,4.86601178122796,9.99183303032055,4.89616294419731,0,0,0,0,0,1.23852898652861,0,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,1.02290049474824,0,0.50133791063589,0,0,0,1.41802225746102,1.10864698731282,1.05401742831751,5.43563163315507,0,0.370784442784429,0.324547393654683,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0,0.516833518338658,3.5576626268671,1.67360306382335,1.20848795132744,1.52054421143703,0.488124115096339,3.67663080345869,0.81014194788176,1.60739510911344,0.898117490504679,0.563057402416611,1.53316637465883,3.79706263827252,0.732806975721629,0,0,1.3082821564276,0.993943903390637,0.25326102332916,0.529636723252875,0.860509862246441,0,0.560677600142307,1.06748995729705,0,0.311211035399766,0.269421344139376,0.653847612453835,0.454072282934794,0,0,0.312160076830321,1.71141546463335,0.896692083310806,0.587172493218824,1.13311061057692,0.98315564691574,2.44985005505872,0.245668634623536,2.6864703105699,0,0,1.82032272387605,1.43723628363248,1.17835279767846,2.37725187756732,5.54128230968366,0,0,0.150238058906597,0.340296549480063,1.4351170855109,0.85422955527427,0,2.10063767259082,1.8549455262919,2.06112432036503,1.48893485065272,1.0126579934476,0.194874010322397,0.504867548488229,0.184099797284599,0,0.355009592516614,0.604512589365842,0.169560592310488,0.57978255948989,0.272746120590835,0.860413786167011,5.73276418809098,13.120447063827,8.71454571521388,18.762650957782,11.3544382894033,21.8986415445498,0,0.643240938192885,0,2.3218396401599,2.16563844500876,8.51808960286876,10.9580048550766,7.47134192638794,9.0441057640563,7.84365998732662,10.2026366217772,7.68538456512937,7.2601942096378,8.46443745282059,2.95262181849859,0,2.057870056657,4.41026134156626,7.60530208930985,2.94848165003288,8.86184860022106,0,24.8436645857089,0.343135620597051,0.768251997860379,0,0.603173834469785,1.11106134190236,0,0,1.44331342025273,1.39116485970092,0.469634776943287,1.01056513432752,0.462985512576611,0.951270761172991,3.1608175918371,4.29243081047436,0,0,0,0,0.503946384596579,0.425325291727159,1.25381931783988,0.871901815541886,0,0,0,0.207328115540772,0,0,0.253991577168676,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,0,0,0,1.29271715757778,3.57656445851882,1.690605505112,5.05282421511254,2.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80000 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31042 | |||
|TSSclassifier=S | |||
|UniProt=Q9C091,B4DDS9 | |||
|association_with_transcript=0bp_to_ENST00000269218,ENST00000400483,ENST00000424526,ENST00000431264,NM_001142966,uc002ktf.1,uc010dlp.1,uc010xam.1_5end | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_1_at_GREB1L_5end | |||
|id=chr18:18822185..18822213,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.03e-14!254 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.08e-08;13!CL:0000349;3.20e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.50e-09,253;CL:0000349,2.75e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0003104;4.37e-07;31 | |||
|ontology_enrichment_disease=DOID:305!9.20e-13!106;DOID:0050687!3.61e-11!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.95e-12,106;DOID:0050687,8.25e-11,143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.80e-08;34!UBERON:0003528;2.54e-08;34!UBERON:0002020;2.54e-08;34!UBERON:0000073;3.59e-08;53!UBERON:0002616;3.59e-08;53!UBERON:0002791;4.32e-08;32!UBERON:0001869;9.86e-08;32!UBERON:0005631;1.09e-07;10!UBERON:0000158;1.09e-07;10!UBERON:0002780;1.75e-07;41!UBERON:0001890;1.75e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.05e-13,56;UBERON:0005068,2.05e-13,56;UBERON:0006241,2.05e-13,56;UBERON:0007135,2.05e-13,56;UBERON:0000073,6.95e-13,53;UBERON:0002616,6.95e-13,53;UBERON:0007023,1.66e-10,114;UBERON:0003075,2.73e-10,82;UBERON:0007284,2.73e-10,82;UBERON:0000955,5.06e-10,68;UBERON:0006238,5.06e-10,68;UBERON:0005631,6.93e-10,14;UBERON:0000158,6.93e-10,14;UBERON:0003528,1.16e-09,34;UBERON:0002020,1.16e-09,34;UBERON:0001893,2.68e-09,34;UBERON:0002780,3.23e-09,41;UBERON:0001890,3.23e-09,41;UBERON:0003080,3.23e-09,41;UBERON:0006240,3.23e-09,41;UBERON:0002346,5.81e-09,86;UBERON:0002791,9.55e-09,32;UBERON:0001869,1.93e-08,32;UBERON:0001017,5.30e-08,81;UBERON:0001016,9.22e-08,89;UBERON:0011216,2.34e-07,223;UBERON:0002417,2.61e-07,60;UBERON:0000916,2.61e-07,60;UBERON:0005156,2.65e-07,59;UBERON:0000990,2.65e-07,59;UBERON:0003133,3.18e-07,48;UBERON:0010371,7.85e-07,104;UBERON:0002323,8.98e-07,46 | |||
|phase1_expression=14.5342703416445,6.42301571672949,26.2175191618506,8.00586386825043,14.7497161161005,9.59572376510406,5.06599756336621,1.26343974685366,3.65659879479774,0.982935746006035,0.697801167972428,24.028550934319,9.75937819445278,0.247532705920093,0.994192127183747,0,0,0,0,11.3271373430645,3.26401105990805,6.26909442956176,4.86601178122796,9.99183303032055,4.89616294419731,0,0,0,0,0,1.23852898652861,0,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,1.02290049474824,0,0.50133791063589,0,0,0,1.41802225746102,1.10864698731282,1.05401742831751,5.43563163315507,0,0.370784442784429,0.324547393654683,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0,0.516833518338658,3.5576626268671,1.67360306382335,1.20848795132744,1.52054421143703,0.488124115096339,3.67663080345869,0.81014194788176,1.60739510911344,0.898117490504679,0.563057402416611,1.53316637465883,3.79706263827252,0.732806975721629,0,0,1.3082821564276,0.993943903390637,0.25326102332916,0.529636723252875,0.860509862246441,0,0.560677600142307,1.06748995729705,0,0.311211035399766,0.269421344139376,0.653847612453835,0.454072282934794,0,0,0.312160076830321,1.71141546463335,0.896692083310806,0.587172493218824,1.13311061057692,0.98315564691574,2.44985005505872,0.245668634623536,2.6864703105699,0,0,1.82032272387605,1.43723628363248,1.17835279767846,2.37725187756732,5.54128230968366,0,0,0.150238058906597,0.340296549480063,1.4351170855109,0.85422955527427,0,2.10063767259082,1.8549455262919,2.06112432036503,1.48893485065272,1.0126579934476,0.194874010322397,0.504867548488229,0.184099797284599,0,0.355009592516614,0.604512589365842,0.169560592310488,0.57978255948989,0.272746120590835,0.860413786167011,5.73276418809098,13.120447063827,8.71454571521388,18.762650957782,11.3544382894033,21.8986415445498,0,0.643240938192885,0,2.3218396401599,2.16563844500876,8.51808960286876,10.9580048550766,7.47134192638794,9.0441057640563,7.84365998732662,10.2026366217772,7.68538456512937,7.2601942096378,8.46443745282059,2.95262181849859,0,2.057870056657,4.41026134156626,7.60530208930985,2.94848165003288,8.86184860022106,0,24.8436645857089,0.343135620597051,0.768251997860379,0,0.603173834469785,1.11106134190236,0,0,1.44331342025273,1.39116485970092,0.469634776943287,1.01056513432752,0.462985512576611,0.951270761172991,3.1608175918371,4.29243081047436,0,0,0,0,0.503946384596579,0.425325291727159,1.25381931783988,0.871901815541886,0,0,0,0.207328115540772,0,0,0.253991577168676,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,0,0,0,1.29271715757778,3.57656445851882,1.690605505112,5.05282421511254,2.08014873822732,0,0,0.266422179016099,0.57191197463259,1.62786481617433,1.64648067356154,0.65147236858747,0,1.58390374586686,0.602878754119172,1.74306691720059,2.0994328148232,0,0,0,0,0,0,6.80472141337622,1.2328579353023,6.08807275015645,0,0,0,0,0.254094624222463,1.30139853857622,0,0.502548796003046,0,0,0,0,1.2269149171914,0,0,1.66376689224646,3.03329280955175,6.93890626149313,9.83987885938791,0,0,0,0,0,0,0,0,0,0,0,6.97193414326397,14.9791895559447,14.8171243731543,3.72161711728165,13.5046536493495,3.64858122762996,11.9169408807802,11.7692667285342,5.79074116116987,29.6836132889982,0,0,0.0821271560138091,0,0.116210378459959,25.6222033134239,0.802025881213139,0.0920809889358963,0.68888668898764,0,3.14698595902618,1.35359883872224,1.61732207919271,2.35304930753057,7.30696123266303,2.00548094896464,0,0.170093705276516,0,0,0.812839312631559,2.00675909541941,5.09752546090077,0.831076008928724,2.91037181138832,0,0,0.769350375349168,0.656029291399411,0.325378394664303,4.01859945426117,0,0,0.574265537996172,1.30012049207304,1.6068392984416,0,0.308097234229289,0.767518373630648,0,0,0.145016693914229,0,0,0.661139661443912,0.384380134730212,2.80747967488085,0.708104465988849,0,0.31481234683064,0,0.308033580176089,0,0,0.74129687641568,1.14499909393593,0,1.2655176988749,0,0,0,0,0,0.359744915166629,0.54907405947211,0.235624804691373,0.606547444719948,0,0.842516912477962,0.975267478179181,0,0,1.9109987597118,0,1.13008116620243,0.551365343546124,0,0.438450885253763,0,0,0.202910376962704,0.30982349809975,0,0.860468113224309,1.3754865741837,0,1.77380532035299,0,0,0,0.349934720244983,0.192444225451024,0,1.08890984861323,6.11934705049064,0.86101074534246,1.68471475667626,0.443430153536676,1.37834040124176,0,0,0,0,0,0,0,0,8.65274976132532,5.77487913158015,6.12600539952579,0,0,0,3.66680427276291,0,0,0,0,0,0,0,0,0,0,0,1.27753871307098,0,0,0.447352215784832,0.333698283423817,0,0,0,0,0,0,0,6.44635988796334,7.52435234846983,0,1.70481688083848,15.5183915079499,44.2477374440632,15.6651958070608,6.95903353436409,16.8803299692615,2.44879151050393,0,5.91151142758382,5.57894367102995,0.828851746593443,10.8331081577339,0.102268682502155,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| |||
|short_description=p1@GREB1L | |||
}} |
Revision as of 16:57, 11 September 2013
Short description: | p1@GREB1L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GREB1L_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 0bp_to_ENST00000269218, ENST00000400483, ENST00000424526, ENST00000431264, NM_001142966, uc002ktf.1, uc010dlp.1, uc010xam.1_5end |
EntrezGene: | GREB1L |
HGNC: | 31042 |
UniProt: | Q9C091B4DDS9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.50e-09 | 253 |
extraembryonic cell | 2.75e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.05e-13 | 56 |
neural rod | 2.05e-13 | 56 |
future spinal cord | 2.05e-13 | 56 |
neural keel | 2.05e-13 | 56 |
regional part of nervous system | 6.95e-13 | 53 |
regional part of brain | 6.95e-13 | 53 |
adult organism | 1.66e-10 | 114 |
neural plate | 2.73e-10 | 82 |
presumptive neural plate | 2.73e-10 | 82 |
brain | 5.06e-10 | 68 |
future brain | 5.06e-10 | 68 |
extraembryonic membrane | 6.93e-10 | 14 |
membranous layer | 6.93e-10 | 14 |
brain grey matter | 1.16e-09 | 34 |
gray matter | 1.16e-09 | 34 |
telencephalon | 2.68e-09 | 34 |
regional part of forebrain | 3.23e-09 | 41 |
forebrain | 3.23e-09 | 41 |
anterior neural tube | 3.23e-09 | 41 |
future forebrain | 3.23e-09 | 41 |
neurectoderm | 5.81e-09 | 86 |
regional part of telencephalon | 9.55e-09 | 32 |
cerebral hemisphere | 1.93e-08 | 32 |
central nervous system | 5.30e-08 | 81 |
nervous system | 9.22e-08 | 89 |
organ system subdivision | 2.34e-07 | 223 |
abdominal segment of trunk | 2.61e-07 | 60 |
abdomen | 2.61e-07 | 60 |
reproductive structure | 2.65e-07 | 59 |
reproductive system | 2.65e-07 | 59 |
reproductive organ | 3.18e-07 | 48 |
ecto-epithelium | 7.85e-07 | 104 |
body cavity | 8.98e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.95e-12 | 106 |
cell type cancer | 8.25e-11 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.