FFCP PHASE1:Hg19::chr1:241695424..241695440,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8564|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6381|TSSclassifier=S|UniProt=O15229|association_with_transcript=0bp_to_ENST00000366558,ENST00000366559,NM_003679_5end|coexpression_cluster_id=C0|description=CAGE_peak_2_at_KMO_5end|id=chr1:241695424..241695440,+|ontology_enrichment_celltype=CL:0000738!2.23e-66!140;CL:0002087!1.23e-65!119;CL:0002194!4.36e-65!63;CL:0000576!4.36e-65!63;CL:0000040!4.36e-65!63;CL:0000559!4.36e-65!63;CL:0002009!7.15e-65!65;CL:0000557!1.39e-57!71;CL:0002031!1.32e-56!124;CL:0000839!1.79e-56!70;CL:0000766!1.89e-56!76;CL:0000037!2.85e-56!172;CL:0000566!2.85e-56!172;CL:0002057!3.62e-56!42;CL:0000988!7.10e-54!182;CL:0000860!2.72e-51!45;CL:0002032!6.17e-51!165;CL:0000837!6.17e-51!165;CL:0000763!1.14e-43!112;CL:0000049!1.14e-43!112;CL:0000945!1.23e-21!24;CL:0000826!1.23e-21!24;CL:0000236!4.53e-18!14;CL:0000134!1.91e-12!358;CL:0002393!2.66e-12!9;CL:0002397!2.66e-12!9;CL:0002320!1.08e-11!365;CL:0000451!6.72e-11!10;CL:0000219!4.19e-09!390;CL:0000990!1.06e-08!8;CL:0000542!9.71e-08!53;CL:0000051!9.71e-08!53;CL:0000838!3.84e-07!52|ontology_enrichment_celltype_v019=CL:0000860;4.46e-65;33!CL:0002057;4.46e-65;33!CL:0000473;1.42e-62;39!CL:0000234;1.42e-62;39!CL:0000576;3.93e-57;48!CL:0000766;2.65e-38;69!CL:0002087;1.43e-23;104!CL:0000236;1.49e-23;13!CL:0000738;5.49e-21;136!CL:0000763;2.37e-16;100!CL:0000945;2.58e-15;24!CL:0000451;7.44e-14;10!CL:0002393;4.09e-13;6!CL:0002397;4.09e-13;6!CL:0000988;5.87e-12;177!CL:0000235;1.53e-11;6!CL:0000990;1.62e-10;8!CL:0000219;4.83e-09;193!CL:0000840;6.64e-09;5!CL:0000875;2.08e-07;3!CL:0002396;2.08e-07;3!CL:0000784;3.59e-07;3!CL:0002619;4.65e-07;3|ontology_enrichment_celltype_v019_2=CL:0002194,3.33e-107,59;CL:0000576,3.33e-107,59;CL:0000040,3.33e-107,59;CL:0000559,3.33e-107,59;CL:0002009,5.25e-107,61;CL:0000473,2.40e-100,48;CL:0000234,2.40e-100,48;CL:0000557,4.38e-96,67;CL:0000839,2.85e-94,66;CL:0000766,1.01e-91,72;CL:0002087,3.26e-91,115;CL:0000738,5.57e-91,136;CL:0000860,8.65e-90,42;CL:0002057,8.65e-90,42;CL:0002031,2.72e-79,120;CL:0000037,8.55e-74,168;CL:0000988,4.94e-69,177;CL:0002032,1.40e-65,161;CL:0000837,1.40e-65,161;CL:0000763,1.57e-64,108;CL:0000049,1.57e-64,108;CL:0000134,1.94e-24,354;CL:0002320,1.43e-23,361;CL:0000236,1.18e-21,14;CL:0000219,1.59e-20,386;CL:0002393,7.81e-19,9;CL:0002397,7.81e-19,9;CL:0000034,4.61e-17,441;CL:0000048,8.36e-17,427;CL:0000723,2.72e-16,433;CL:0000945,2.48e-15,24;CL:0000826,2.48e-15,24;CL:0000451,6.36e-14,10;CL:0000235,1.65e-11,6;CL:0000990,1.65e-10,8;CL:0000840,7.38e-09,5;CL:0001029,7.38e-09,5;CL:0000875,2.20e-07,3;CL:0002396,2.20e-07,3;CL:0000784,2.86e-07,3;CL:0002619,5.46e-07,3|ontology_enrichment_development_v019=CL:0002057;6.30e-64;42!CL:0000049;8.39e-18;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.96e-59!102;UBERON:0003061!2.96e-59!102;UBERON:0002193!5.70e-55!112;UBERON:0002371!2.22e-52!80;UBERON:0001474!3.34e-47!86;UBERON:0002405!3.38e-40!115;UBERON:0004765!2.45e-38!101;UBERON:0001434!2.45e-38!101;UBERON:0003081!7.16e-18!216;UBERON:0002204!1.58e-16!167;UBERON:0002384!3.96e-11!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.51e-86,98;UBERON:0003061,4.51e-86,98;UBERON:0002371,7.84e-86,76;UBERON:0002193,5.74e-79,108;UBERON:0001474,2.09e-78,82;UBERON:0002405,2.18e-77,93;UBERON:0004765,4.93e-70,90;UBERON:0001434,1.94e-61,100;UBERON:0003081,2.08e-32,203;UBERON:0002204,2.30e-30,167;UBERON:0002384,2.16e-22,371;UBERON:0000926,9.73e-15,315;UBERON:0004120,9.73e-15,315;UBERON:0006603,9.73e-15,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0.393364276848904,3.0706351847777,2.16742572642506,0,0,0,2.47895041856965,0.568676929949686,1.17440175733939,6.64794490238253,4.41197784434312,5.64228263861215,6.04571780447796,4.21061765824673,2.06060454107349,2.03557534291391,7.935394817465,3.88134497900506,11.6214518452842,19.3248907370258,15.4853185447552,31.9338555477587,37.3994631532487,69.7622578171326,26.200671735983,25.1739026597692,28.4395621848118,7.34145124216158,13.0994952027766,23.820689351179,31.8327248065739,49.7439991967945,32.6061934157511,2.96866170168044,17.7522655283252,7.6720455095885,29.8915515787442,19.2910976394988,19.9303119678584,19.3461472247692,22.9452484104889,47.1299793010103,23.005181100068,36.4594859627689,50.3175196031006,6.97142444829408,12.7562579979026,7.12839394728478,3.36985893439485,2.85336096398862,4.66104201421532,4.27519115611873,7.55883373356542,8.03722276564389,19.3595868907455,12.0150494477669,18.6796943311347,24.7503529088574,22.0217792869807,15.518315878771,15.2040320740518,14.3108063180305,5.69212969109448,8.22132065119314,4.58727873750275,1.32171328579026,0.560508562981536,1.84368859342554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.261958150995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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8564 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6381 | |||
|TSSclassifier=S | |||
|UniProt=O15229 | |||
|association_with_transcript=0bp_to_ENST00000366558,ENST00000366559,NM_003679_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_KMO_5end | |||
|id=chr1:241695424..241695440,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.23e-66!140;CL:0002087!1.23e-65!119;CL:0002194!4.36e-65!63;CL:0000576!4.36e-65!63;CL:0000040!4.36e-65!63;CL:0000559!4.36e-65!63;CL:0002009!7.15e-65!65;CL:0000557!1.39e-57!71;CL:0002031!1.32e-56!124;CL:0000839!1.79e-56!70;CL:0000766!1.89e-56!76;CL:0000037!2.85e-56!172;CL:0000566!2.85e-56!172;CL:0002057!3.62e-56!42;CL:0000988!7.10e-54!182;CL:0000860!2.72e-51!45;CL:0002032!6.17e-51!165;CL:0000837!6.17e-51!165;CL:0000763!1.14e-43!112;CL:0000049!1.14e-43!112;CL:0000945!1.23e-21!24;CL:0000826!1.23e-21!24;CL:0000236!4.53e-18!14;CL:0000134!1.91e-12!358;CL:0002393!2.66e-12!9;CL:0002397!2.66e-12!9;CL:0002320!1.08e-11!365;CL:0000451!6.72e-11!10;CL:0000219!4.19e-09!390;CL:0000990!1.06e-08!8;CL:0000542!9.71e-08!53;CL:0000051!9.71e-08!53;CL:0000838!3.84e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.46e-65;33!CL:0002057;4.46e-65;33!CL:0000473;1.42e-62;39!CL:0000234;1.42e-62;39!CL:0000576;3.93e-57;48!CL:0000766;2.65e-38;69!CL:0002087;1.43e-23;104!CL:0000236;1.49e-23;13!CL:0000738;5.49e-21;136!CL:0000763;2.37e-16;100!CL:0000945;2.58e-15;24!CL:0000451;7.44e-14;10!CL:0002393;4.09e-13;6!CL:0002397;4.09e-13;6!CL:0000988;5.87e-12;177!CL:0000235;1.53e-11;6!CL:0000990;1.62e-10;8!CL:0000219;4.83e-09;193!CL:0000840;6.64e-09;5!CL:0000875;2.08e-07;3!CL:0002396;2.08e-07;3!CL:0000784;3.59e-07;3!CL:0002619;4.65e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,3.33e-107,59;CL:0000576,3.33e-107,59;CL:0000040,3.33e-107,59;CL:0000559,3.33e-107,59;CL:0002009,5.25e-107,61;CL:0000473,2.40e-100,48;CL:0000234,2.40e-100,48;CL:0000557,4.38e-96,67;CL:0000839,2.85e-94,66;CL:0000766,1.01e-91,72;CL:0002087,3.26e-91,115;CL:0000738,5.57e-91,136;CL:0000860,8.65e-90,42;CL:0002057,8.65e-90,42;CL:0002031,2.72e-79,120;CL:0000037,8.55e-74,168;CL:0000988,4.94e-69,177;CL:0002032,1.40e-65,161;CL:0000837,1.40e-65,161;CL:0000763,1.57e-64,108;CL:0000049,1.57e-64,108;CL:0000134,1.94e-24,354;CL:0002320,1.43e-23,361;CL:0000236,1.18e-21,14;CL:0000219,1.59e-20,386;CL:0002393,7.81e-19,9;CL:0002397,7.81e-19,9;CL:0000034,4.61e-17,441;CL:0000048,8.36e-17,427;CL:0000723,2.72e-16,433;CL:0000945,2.48e-15,24;CL:0000826,2.48e-15,24;CL:0000451,6.36e-14,10;CL:0000235,1.65e-11,6;CL:0000990,1.65e-10,8;CL:0000840,7.38e-09,5;CL:0001029,7.38e-09,5;CL:0000875,2.20e-07,3;CL:0002396,2.20e-07,3;CL:0000784,2.86e-07,3;CL:0002619,5.46e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;6.30e-64;42!CL:0000049;8.39e-18;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.96e-59!102;UBERON:0003061!2.96e-59!102;UBERON:0002193!5.70e-55!112;UBERON:0002371!2.22e-52!80;UBERON:0001474!3.34e-47!86;UBERON:0002405!3.38e-40!115;UBERON:0004765!2.45e-38!101;UBERON:0001434!2.45e-38!101;UBERON:0003081!7.16e-18!216;UBERON:0002204!1.58e-16!167;UBERON:0002384!3.96e-11!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.51e-86,98;UBERON:0003061,4.51e-86,98;UBERON:0002371,7.84e-86,76;UBERON:0002193,5.74e-79,108;UBERON:0001474,2.09e-78,82;UBERON:0002405,2.18e-77,93;UBERON:0004765,4.93e-70,90;UBERON:0001434,1.94e-61,100;UBERON:0003081,2.08e-32,203;UBERON:0002204,2.30e-30,167;UBERON:0002384,2.16e-22,371;UBERON:0000926,9.73e-15,315;UBERON:0004120,9.73e-15,315;UBERON:0006603,9.73e-15,315 | |||
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|short_description=p2@KMO | |||
}} |
Revision as of 04:34, 12 September 2013
Short description: | p2@KMO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_KMO_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000366558, ENST00000366559, NM_003679_5end |
EntrezGene: | KMO |
HGNC: | 6381 |
UniProt: | O15229 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.51e-86 | 98 |
blood island | 4.51e-86 | 98 |
bone marrow | 7.84e-86 | 76 |
hemolymphoid system | 5.74e-79 | 108 |
bone element | 2.09e-78 | 82 |
immune system | 2.18e-77 | 93 |
skeletal element | 4.93e-70 | 90 |
skeletal system | 1.94e-61 | 100 |
lateral plate mesoderm | 2.08e-32 | 203 |
musculoskeletal system | 2.30e-30 | 167 |
connective tissue | 2.16e-22 | 371 |
mesoderm | 9.73e-15 | 315 |
mesoderm-derived structure | 9.73e-15 | 315 |
presumptive mesoderm | 9.73e-15 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.