FFCP PHASE1:Hg19::chr1:46768851..46768867,-: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10489 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16917 | |||
|TSSclassifier=S | |||
|UniProt=B5MD92 | |||
|association_with_transcript=78bp_to_ENST00000254454,ENST00000498402_5end | |||
|coexpression_cluster_id=C345 | |||
|description=CAGE_peak_2_at_LRRC41_5end | |||
|id=chr1:46768851..46768867,- | |||
|ontology_enrichment_celltype=CL:0000055!8.72e-25!180;CL:0000183!1.26e-20!59;CL:0002371!4.83e-18!591;CL:0000187!6.51e-18!54;CL:0000680!1.29e-17!57;CL:0000056!1.29e-17!57;CL:0000355!1.29e-17!57;CL:0000222!5.62e-17!119;CL:0000144!2.50e-16!625;CL:0000192!1.15e-15!42;CL:0000514!1.15e-15!42;CL:0000057!4.14e-14!75;CL:0000393!1.74e-13!60;CL:0000211!1.74e-13!60;CL:0000359!2.44e-12!32;CL:0000220!2.95e-10!246;CL:0002321!5.66e-10!248;CL:0000548!3.78e-08!679;CL:0000004!3.78e-08!679;CL:0000255!3.78e-08!679;CL:0000012!6.93e-08!682;CL:1000449!4.04e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000192;5.68e-12;43!CL:0000359;1.05e-11;32!CL:0000187;2.83e-10;55!CL:0000349;1.14e-08;19!CL:0000393;7.51e-08;61!CL:0000211;7.51e-08;61!CL:0000134;1.36e-07;55!CL:0000723;3.80e-07;61!CL:1000449;8.84e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,3.51e-18,55;CL:0000680,6.90e-18,58;CL:0000056,6.90e-18,58;CL:0000355,6.90e-18,58;CL:0000222,1.66e-17,121;CL:0000192,6.32e-16,43;CL:0000514,6.32e-16,43;CL:0000057,4.34e-14,76;CL:0000393,9.47e-14,61;CL:0000211,9.47e-14,61;CL:0000359,2.44e-12,32;CL:0002321,2.34e-10,250;CL:0000349,1.08e-08,19;CL:1000449,7.08e-07,15;CL:0000723,9.67e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;5.68e-12;43!CL:0000355;4.80e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!2.71e-18!70;UBERON:0000914!4.94e-18!83;UBERON:0002329!4.94e-18!83;UBERON:0003077!4.94e-18!83;UBERON:0003059!4.94e-18!83;UBERON:0007282!4.94e-18!83;UBERON:0009618!4.94e-18!83;UBERON:0007285!4.94e-18!83;UBERON:0000486!1.12e-17!82;UBERON:0005256!1.61e-16!143;UBERON:0001134!6.41e-16!61;UBERON:0002036!6.41e-16!61;UBERON:0003082!6.41e-16!61;UBERON:0002385!1.01e-15!63;UBERON:0001015!1.01e-15!63;UBERON:0000383!1.01e-15!63;UBERON:0002049!1.74e-15!79;UBERON:0007798!1.74e-15!79;UBERON:0004872!3.82e-15!84;UBERON:0000119!1.44e-14!312;UBERON:0000483!2.79e-14!309;UBERON:0000475!3.82e-14!365;UBERON:0003914!6.29e-14!118;UBERON:0000055!3.74e-13!69;UBERON:0001981!7.92e-12!60;UBERON:0007500!7.92e-12!60;UBERON:0004537!7.92e-12!60;UBERON:0006965!7.92e-12!60;UBERON:0000490!1.03e-11!138;UBERON:0001637!4.70e-11!42;UBERON:0003509!4.70e-11!42;UBERON:0004572!4.70e-11!42;UBERON:0002100!9.79e-11!216;UBERON:0004535!2.08e-10!110;UBERON:0001009!4.89e-10!113;UBERON:0000481!5.03e-10!347;UBERON:0004573!6.26e-09!33;UBERON:0004571!6.26e-09!33;UBERON:0002199!1.84e-08!45;UBERON:0002416!1.84e-08!45;UBERON:0004111!2.00e-08!241;UBERON:0000477!2.15e-08!286;UBERON:0003102!4.05e-08!95;UBERON:0003104!6.77e-08!238;UBERON:0009142!6.77e-08!238;UBERON:0000468!2.59e-07!659;UBERON:0004211!4.04e-07!16;UBERON:0001285!4.04e-07!16;UBERON:0007684!4.04e-07!16;UBERON:0003220!4.04e-07!16;UBERON:0004208!4.04e-07!16;UBERON:0005631!4.35e-07!14;UBERON:0000158!4.35e-07!14;UBERON:0000025!5.76e-07!194;UBERON:0002097!6.28e-07!40;UBERON:0006555!6.48e-07!17;UBERON:0005103!6.48e-07!17;UBERON:0000083!6.48e-07!17;UBERON:0009201!6.48e-07!17;UBERON:0004819!6.48e-07!17;UBERON:0006553!6.48e-07!17;UBERON:0003074!6.48e-07!17;UBERON:0003060!6.48e-07!17;UBERON:0000080!7.35e-07!18;UBERON:0002120!7.35e-07!18;UBERON:0004875!7.35e-07!18;UBERON:0005721!7.35e-07!18;UBERON:0005754!7.35e-07!18;UBERON:0007297!7.35e-07!18;UBERON:0004876!9.75e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;5.59e-08;33!UBERON:0004571;5.59e-08;33!UBERON:0001637;7.11e-08;42!UBERON:0003509;7.11e-08;42!UBERON:0004572;7.11e-08;42!UBERON:0007500;9.99e-08;56!UBERON:0001981;9.99e-08;56!UBERON:0004537;9.99e-08;56!UBERON:0003914;1.14e-07;74!UBERON:0002049;3.47e-07;75!UBERON:0007798;3.47e-07;75!UBERON:0003102;4.12e-07;50!UBERON:0000055;8.53e-07;65!UBERON:0006555;8.84e-07;15!UBERON:0004819;8.84e-07;15!UBERON:0001285;8.84e-07;15!UBERON:0007684;8.84e-07;15 | |||
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| |||
|short_description=p2@LRRC41 | |||
}} |
Revision as of 05:58, 12 September 2013
Short description: | p2@LRRC41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LRRC41_5end |
Coexpression cluster: | C345_Mesenchymal_Fibroblast_Alveolar_Renal_Pericytes_Hepatic_Smooth |
Association with transcript: | 78bp_to_ENST00000254454, ENST00000498402_5end |
EntrezGene: | LRRC41 |
HGNC: | 16917 |
UniProt: | B5MD92 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 3.51e-18 | 55 |
muscle precursor cell | 6.90e-18 | 58 |
myoblast | 6.90e-18 | 58 |
multi-potent skeletal muscle stem cell | 6.90e-18 | 58 |
mesodermal cell | 1.66e-17 | 121 |
smooth muscle cell | 6.32e-16 | 43 |
smooth muscle myoblast | 6.32e-16 | 43 |
fibroblast | 4.34e-14 | 76 |
electrically responsive cell | 9.47e-14 | 61 |
electrically active cell | 9.47e-14 | 61 |
vascular associated smooth muscle cell | 2.44e-12 | 32 |
embryonic cell | 2.34e-10 | 250 |
extraembryonic cell | 1.08e-08 | 19 |
epithelial cell of nephron | 7.08e-07 | 15 |
somatic stem cell | 9.67e-07 | 433 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.