FFCP PHASE1:Mm9::chr11:83116143..83116305,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71770|HGNC=|MCL_coexpression_id=60|UniProt=Q9DBG3,Q5SWR1|association_with_transcript=0bp_to_ENSMUST00000065692,ENSMUST00000132178,NM_001035854,NM_027915,uc007kor.1,uc007kos.1,uc007kot.1,uc007kou.1_5end|description=CAGE_peak_1_at_Ap2b1_5end|id=chr11:83116143..83116305,+|ontology_enrichment_celltype=CL:0000117!8.71e-13!23;CL:0000337!8.71e-13!23;CL:0000393!4.51e-09!39;CL:0000211!4.51e-09!39;CL:0000540!3.13e-08!33;CL:0000047!3.13e-08!33;CL:0000031!3.13e-08!33;CL:0000404!3.13e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,8.71e-13,23;CL:0000337,8.71e-13,23;CL:0000393,4.51e-09,39;CL:0000211,4.51e-09,39;CL:0000540,3.13e-08,33;CL:0000047,3.13e-08,33;CL:0000031,3.13e-08,33;CL:0000404,3.13e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.09e-20!52;UBERON:0005068!3.09e-20!52;UBERON:0006241!3.09e-20!52;UBERON:0007135!3.09e-20!52;UBERON:0000955!2.57e-19!50;UBERON:0006238!2.57e-19!50;UBERON:0000033!6.14e-19!63;UBERON:0002616!8.39e-19!49;UBERON:0003056!2.65e-18!49;UBERON:0000073!2.88e-18!75;UBERON:0001016!2.88e-18!75;UBERON:0001017!9.51e-18!73;UBERON:0005743!9.51e-18!73;UBERON:0002020!1.15e-17!34;UBERON:0003080!1.86e-17!40;UBERON:0002346!2.59e-17!71;UBERON:0003075!2.59e-17!71;UBERON:0007284!2.59e-17!71;UBERON:0002780!6.04e-17!39;UBERON:0001890!6.04e-17!39;UBERON:0006240!6.04e-17!39;UBERON:0002791!4.11e-15!29;UBERON:0003528!4.11e-15!29;UBERON:0001893!4.11e-15!29;UBERON:0004121!6.28e-15!102;UBERON:0000924!6.28e-15!102;UBERON:0006601!6.28e-15!102;UBERON:0000956!6.81e-11!21;UBERON:0001869!6.81e-11!21;UBERON:0000203!6.81e-11!21;UBERON:0000153!1.26e-10!94;UBERON:0007811!4.07e-10!86;UBERON:0002619!6.78e-09!17;UBERON:0002021!3.15e-07!10;UBERON:0000411!3.15e-07!10;UBERON:0001950!3.15e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.70e-21,54;UBERON:0001049,3.09e-20,52;UBERON:0005068,3.09e-20,52;UBERON:0006241,3.09e-20,52;UBERON:0007135,3.09e-20,52;UBERON:0002346,1.70e-19,64;UBERON:0003075,1.70e-19,64;UBERON:0007284,1.70e-19,64;UBERON:0003056,2.65e-18,49;UBERON:0001016,2.88e-18,75;UBERON:0001017,9.51e-18,73;UBERON:0002020,1.15e-17,34;UBERON:0000955,1.34e-17,47;UBERON:0006238,1.34e-17,47;UBERON:0003080,1.86e-17,40;UBERON:0002616,4.26e-17,46;UBERON:0002780,6.04e-17,39;UBERON:0001890,6.04e-17,39;UBERON:0006240,6.04e-17,39;UBERON:0004121,3.12e-16,95;UBERON:0000924,3.12e-16,95;UBERON:0006601,3.12e-16,95;UBERON:0010371,3.52e-15,73;UBERON:0003528,4.11e-15,29;UBERON:0002791,4.11e-15,29;UBERON:0001893,4.11e-15,29;UBERON:0000956,6.81e-11,21;UBERON:0001869,6.81e-11,21;UBERON:0000203,6.81e-11,21;UBERON:0010314,8.78e-11,92;UBERON:0002619,6.78e-09,17;UBERON:0002021,3.15e-07,10;UBERON:0000411,3.15e-07,10;UBERON:0001950,3.15e-07,10|phase1_expression=65.6610273129655,60.3727455216095,48.2299193752908,65.9371980648889,63.6137577031861,49.0207473982718,45.0872396349365,50.2289728187732,47.0234331986567,51.7282603171606,54.2760959274851,56.2393720917122,55.4690364977107,44.3221440264317,34.6434152288289,53.0485200561344,53.1667027377391,77.7614237608056,79.5263714913285,70.024292546675,176.294740483168,42.7943999675816,40.485967316535,78.2362947459759,68.822784320151,53.4035726626969,52.9837255275662,55.1606355675876,77.3395317187442,79.3894908743782,52.3284005146519,25.4012269383852,35.6737576799051,15.8481681015439,42.4611881034374,42.2235999210571,37.7713309085383,64.4538711334838,64.0694982509516,78.0050378520959,87.0582602285901,83.3315491649304,64.0873666001123,82.8401062279299,76.3368292082945,84.0644124900501,22.6893489860931,48.1835595600787,69.6405199268276,58.7178295204336,78.9523417967045,53.1884488150395,74.1599118775195,42.7963663786693,49.0696946747997,89.5262837405096,74.212160944138,60.3336347964607,153.760510253294,190.436752537932,139.442908771359,33.2067641427749,40.0182658250013,27.4469413770827,39.554654502679,23.4458437932213,25.166409283546,34.9638657842615,113.229056640858,129.200682983428,116.309703627314,107.976072104638,111.317744639613,115.753805258132,132.745977360257,124.094536192353,112.318198619376,165.355102820318,157.753909654162,173.562354652935,216.276789476096,162.004058243152,110.835650603548,84.9771541147837,125.447361424761,156.742407471991,153.476671901433,137.749190464897,71.5612526998589,99.3010299803162,56.8134397855288,33.5565312022741,26.5188820146023,36.1601138397337,32.4888208723835,38.0822854032735,66.8515439827139,59.9914735474763,46.7614808285164,38.1606740471167,58.4500192073224,93.678328512452,101.922095882658,49.7746692207332,58.2360900320166,59.032848655698,58.1353111767001,65.6557308384595,136.978140449354,63.9785619369395,54.9948485848651,65.1556123587982,60.4212602810873,60.7412241427069,74.5512403240369,52.0259688104856,112.47371031914,63.3345183309213,52.1920225650426,51.7653919831709,51.0143907643509,59.1547808824971,55.9175283654366,130.287454670138,115.614582161027,77.1480306729946,41.0965877055307,27.5955256256968,39.264700165577,126.573090297075,156.007705561152,152.544383465017,194.3355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| ||
|EntrezGene=71770 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q9DBG3,Q5SWR1 | |||
|association_with_transcript=0bp_to_ENSMUST00000065692,ENSMUST00000132178,NM_001035854,NM_027915,uc007kor.1,uc007kos.1,uc007kot.1,uc007kou.1_5end | |||
|description=CAGE_peak_1_at_Ap2b1_5end | |||
|id=chr11:83116143..83116305,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.71e-13!23;CL:0000337!8.71e-13!23;CL:0000393!4.51e-09!39;CL:0000211!4.51e-09!39;CL:0000540!3.13e-08!33;CL:0000047!3.13e-08!33;CL:0000031!3.13e-08!33;CL:0000404!3.13e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.71e-13,23;CL:0000337,8.71e-13,23;CL:0000393,4.51e-09,39;CL:0000211,4.51e-09,39;CL:0000540,3.13e-08,33;CL:0000047,3.13e-08,33;CL:0000031,3.13e-08,33;CL:0000404,3.13e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.09e-20!52;UBERON:0005068!3.09e-20!52;UBERON:0006241!3.09e-20!52;UBERON:0007135!3.09e-20!52;UBERON:0000955!2.57e-19!50;UBERON:0006238!2.57e-19!50;UBERON:0000033!6.14e-19!63;UBERON:0002616!8.39e-19!49;UBERON:0003056!2.65e-18!49;UBERON:0000073!2.88e-18!75;UBERON:0001016!2.88e-18!75;UBERON:0001017!9.51e-18!73;UBERON:0005743!9.51e-18!73;UBERON:0002020!1.15e-17!34;UBERON:0003080!1.86e-17!40;UBERON:0002346!2.59e-17!71;UBERON:0003075!2.59e-17!71;UBERON:0007284!2.59e-17!71;UBERON:0002780!6.04e-17!39;UBERON:0001890!6.04e-17!39;UBERON:0006240!6.04e-17!39;UBERON:0002791!4.11e-15!29;UBERON:0003528!4.11e-15!29;UBERON:0001893!4.11e-15!29;UBERON:0004121!6.28e-15!102;UBERON:0000924!6.28e-15!102;UBERON:0006601!6.28e-15!102;UBERON:0000956!6.81e-11!21;UBERON:0001869!6.81e-11!21;UBERON:0000203!6.81e-11!21;UBERON:0000153!1.26e-10!94;UBERON:0007811!4.07e-10!86;UBERON:0002619!6.78e-09!17;UBERON:0002021!3.15e-07!10;UBERON:0000411!3.15e-07!10;UBERON:0001950!3.15e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.70e-21,54;UBERON:0001049,3.09e-20,52;UBERON:0005068,3.09e-20,52;UBERON:0006241,3.09e-20,52;UBERON:0007135,3.09e-20,52;UBERON:0002346,1.70e-19,64;UBERON:0003075,1.70e-19,64;UBERON:0007284,1.70e-19,64;UBERON:0003056,2.65e-18,49;UBERON:0001016,2.88e-18,75;UBERON:0001017,9.51e-18,73;UBERON:0002020,1.15e-17,34;UBERON:0000955,1.34e-17,47;UBERON:0006238,1.34e-17,47;UBERON:0003080,1.86e-17,40;UBERON:0002616,4.26e-17,46;UBERON:0002780,6.04e-17,39;UBERON:0001890,6.04e-17,39;UBERON:0006240,6.04e-17,39;UBERON:0004121,3.12e-16,95;UBERON:0000924,3.12e-16,95;UBERON:0006601,3.12e-16,95;UBERON:0010371,3.52e-15,73;UBERON:0003528,4.11e-15,29;UBERON:0002791,4.11e-15,29;UBERON:0001893,4.11e-15,29;UBERON:0000956,6.81e-11,21;UBERON:0001869,6.81e-11,21;UBERON:0000203,6.81e-11,21;UBERON:0010314,8.78e-11,92;UBERON:0002619,6.78e-09,17;UBERON:0002021,3.15e-07,10;UBERON:0000411,3.15e-07,10;UBERON:0001950,3.15e-07,10 | |||
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| |||
|short_description=p1@Ap2b1 | |||
}} |
Revision as of 21:11, 12 September 2013
Short description: | p1@Ap2b1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ap2b1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000065692, ENSMUST00000132178, NM_001035854, NM_027915, uc007kor.1, uc007kos.1, uc007kot.1, uc007kou.1_5end |
EntrezGene: | Ap2b1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.71e-13 | 23 |
neuroblast (sensu Vertebrata) | 8.71e-13 | 23 |
electrically responsive cell | 4.51e-09 | 39 |
electrically active cell | 4.51e-09 | 39 |
neuron | 3.13e-08 | 33 |
neuronal stem cell | 3.13e-08 | 33 |
neuroblast | 3.13e-08 | 33 |
electrically signaling cell | 3.13e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.70e-21 | 54 |
neural tube | 3.09e-20 | 52 |
neural rod | 3.09e-20 | 52 |
future spinal cord | 3.09e-20 | 52 |
neural keel | 3.09e-20 | 52 |
neurectoderm | 1.70e-19 | 64 |
neural plate | 1.70e-19 | 64 |
presumptive neural plate | 1.70e-19 | 64 |
pre-chordal neural plate | 2.65e-18 | 49 |
nervous system | 2.88e-18 | 75 |
central nervous system | 9.51e-18 | 73 |
gray matter | 1.15e-17 | 34 |
brain | 1.34e-17 | 47 |
future brain | 1.34e-17 | 47 |
anterior neural tube | 1.86e-17 | 40 |
regional part of brain | 4.26e-17 | 46 |
regional part of forebrain | 6.04e-17 | 39 |
forebrain | 6.04e-17 | 39 |
future forebrain | 6.04e-17 | 39 |
ectoderm-derived structure | 3.12e-16 | 95 |
ectoderm | 3.12e-16 | 95 |
presumptive ectoderm | 3.12e-16 | 95 |
ecto-epithelium | 3.52e-15 | 73 |
brain grey matter | 4.11e-15 | 29 |
regional part of telencephalon | 4.11e-15 | 29 |
telencephalon | 4.11e-15 | 29 |
cerebral cortex | 6.81e-11 | 21 |
cerebral hemisphere | 6.81e-11 | 21 |
pallium | 6.81e-11 | 21 |
structure with developmental contribution from neural crest | 8.78e-11 | 92 |
regional part of cerebral cortex | 6.78e-09 | 17 |
occipital lobe | 3.15e-07 | 10 |
visual cortex | 3.15e-07 | 10 |
neocortex | 3.15e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.