FFCP PHASE1:Hg19::chr3:147121835..147121852,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84107|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20393|TSSclassifier=N|UniProt=Q8N9L1|association_with_transcript=218bp_to_ENST00000484399_5end|coexpression_cluster_id=C11|description=CAGE_peak_9_at_ZIC4_5end|id=chr3:147121835..147121852,-|ontology_enrichment_celltype=CL:0002603!1.44e-21!3;CL:0000064!1.23e-20!3;CL:0005012!1.23e-20!3;CL:0000067!1.23e-20!3;CL:0002304!1.23e-20!3;CL:0002575!2.72e-15!2;CL:0002590!1.96e-10!3;CL:0000708!2.98e-10!3;CL:0000128!1.49e-09!7;CL:0000126!1.49e-09!7;CL:0000127!1.49e-09!7;CL:0002453!1.49e-09!7|ontology_enrichment_celltype_v019=CL:0000346;2.59e-12;3!CL:1000428;2.59e-12;3!CL:0002590;3.06e-12;3!CL:0002603;3.06e-12;3!CL:0002559;6.55e-08;5|ontology_enrichment_celltype_v019_2=CL:0000346,2.59e-12,3;CL:1000428,2.59e-12,3;CL:0002590,2.89e-12,3;CL:0002603,3.24e-12,3;CL:0002559,6.55e-08,5|ontology_enrichment_development_v019=UBERON:0006215;4.06e-99;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004733!3.47e-46!12;UBERON:0002028!3.47e-46!12;UBERON:0007277!3.47e-46!12;UBERON:0004732!1.56e-42!13;UBERON:0002037!2.15e-42!6;UBERON:0006215!2.15e-42!6;UBERON:0002680!5.75e-38!9;UBERON:0001895!5.75e-38!9;UBERON:0010092!5.75e-38!9;UBERON:0003076!1.10e-36!15;UBERON:0003057!1.10e-36!15;UBERON:0002616!1.78e-26!59;UBERON:0003075!9.10e-25!86;UBERON:0007284!9.10e-25!86;UBERON:0005743!1.07e-24!86;UBERON:0002346!1.62e-23!90;UBERON:0001017!3.09e-23!82;UBERON:0000073!4.59e-22!94;UBERON:0001016!4.59e-22!94;UBERON:0002200!5.26e-22!11;UBERON:0006876!5.26e-22!11;UBERON:0000955!6.85e-22!69;UBERON:0006238!6.85e-22!69;UBERON:0001778!1.23e-20!3;UBERON:0001775!1.23e-20!3;UBERON:0000033!3.57e-18!123;UBERON:0001049!1.06e-17!57;UBERON:0005068!1.06e-17!57;UBERON:0006241!1.06e-17!57;UBERON:0007135!1.06e-17!57;UBERON:0000153!3.64e-17!129;UBERON:0007811!3.64e-17!129;UBERON:0004121!5.64e-17!169;UBERON:0000924!1.72e-16!173;UBERON:0006601!1.72e-16!173;UBERON:0000488!1.24e-15!4;UBERON:0002360!7.31e-15!2;UBERON:0000094!7.31e-15!2;UBERON:0007645!7.31e-15!2;UBERON:0005284!2.46e-13!5;UBERON:0002203!1.32e-10!6;UBERON:0001768!1.32e-10!6;UBERON:0000119!2.45e-10!312;UBERON:0003210!2.98e-10!3;UBERON:0001896!3.93e-10!3;UBERON:0005290!3.93e-10!3;UBERON:0010096!3.93e-10!3;UBERON:0000063!1.30e-09!97;UBERON:0000483!2.10e-08!309;UBERON:0002298!2.43e-08!8;UBERON:0002363!4.72e-08!1;UBERON:0007647!4.72e-08!1;UBERON:0010115!4.72e-08!1;UBERON:0007190!7.16e-08!1;UBERON:0007023!1.14e-07!115|ontology_enrichment_uberon_v019=UBERON:0002037;9.79e-88;6!UBERON:0002680;8.03e-59;9!UBERON:0001895;8.03e-59;9!UBERON:0004733;2.40e-44;12!UBERON:0002028;2.40e-44;12!UBERON:0004732;5.29e-41;13!UBERON:0000412;2.59e-12;3!UBERON:0001992;2.59e-12;3!UBERON:0002073;6.55e-08;5!UBERON:0005284;7.25e-08;5!UBERON:0001016;7.03e-07;83!UBERON:0000073;7.27e-07;53!UBERON:0002616;7.27e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0002037,1.10e-87,6;UBERON:0006215,1.10e-87,6;UBERON:0002680,8.65e-59,9;UBERON:0001895,8.65e-59,9;UBERON:0010092,8.65e-59,9;UBERON:0004733,2.54e-44,12;UBERON:0002028,2.54e-44,12;UBERON:0007277,2.54e-44,12;UBERON:0004732,5.58e-41,13;UBERON:0003076,1.25e-35,15;UBERON:0003057,1.25e-35,15;UBERON:0000412,2.59e-12,3;UBERON:0001992,2.59e-12,3;UBERON:0000955,2.95e-12,68;UBERON:0006238,2.95e-12,68;UBERON:0001017,2.09e-10,81;UBERON:0000073,2.23e-10,53;UBERON:0002616,2.23e-10,53;UBERON:0001049,7.34e-10,56;UBERON:0005068,7.34e-10,56;UBERON:0006241,7.34e-10,56;UBERON:0007135,7.34e-10,56;UBERON:0001016,1.98e-09,89;UBERON:0010371,2.57e-08,104;UBERON:0002073,6.55e-08,5;UBERON:0005086,6.55e-08,5;UBERON:0005284,7.01e-08,5;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171;UBERON:0003075,6.33e-07,82;UBERON:0007284,6.33e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0.204000691244253,1.56727360739044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.85944562915731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,0,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.979005787313703,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86079184679834,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84107 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20393 | |||
|TSSclassifier=N | |||
|UniProt=Q8N9L1 | |||
|association_with_transcript=218bp_to_ENST00000484399_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_9_at_ZIC4_5end | |||
|id=chr3:147121835..147121852,- | |||
|ontology_enrichment_celltype=CL:0002603!1.44e-21!3;CL:0000064!1.23e-20!3;CL:0005012!1.23e-20!3;CL:0000067!1.23e-20!3;CL:0002304!1.23e-20!3;CL:0002575!2.72e-15!2;CL:0002590!1.96e-10!3;CL:0000708!2.98e-10!3;CL:0000128!1.49e-09!7;CL:0000126!1.49e-09!7;CL:0000127!1.49e-09!7;CL:0002453!1.49e-09!7 | |||
|ontology_enrichment_celltype_v019=CL:0000346;2.59e-12;3!CL:1000428;2.59e-12;3!CL:0002590;3.06e-12;3!CL:0002603;3.06e-12;3!CL:0002559;6.55e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,2.59e-12,3;CL:1000428,2.59e-12,3;CL:0002590,2.89e-12,3;CL:0002603,3.24e-12,3;CL:0002559,6.55e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.06e-99;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004733!3.47e-46!12;UBERON:0002028!3.47e-46!12;UBERON:0007277!3.47e-46!12;UBERON:0004732!1.56e-42!13;UBERON:0002037!2.15e-42!6;UBERON:0006215!2.15e-42!6;UBERON:0002680!5.75e-38!9;UBERON:0001895!5.75e-38!9;UBERON:0010092!5.75e-38!9;UBERON:0003076!1.10e-36!15;UBERON:0003057!1.10e-36!15;UBERON:0002616!1.78e-26!59;UBERON:0003075!9.10e-25!86;UBERON:0007284!9.10e-25!86;UBERON:0005743!1.07e-24!86;UBERON:0002346!1.62e-23!90;UBERON:0001017!3.09e-23!82;UBERON:0000073!4.59e-22!94;UBERON:0001016!4.59e-22!94;UBERON:0002200!5.26e-22!11;UBERON:0006876!5.26e-22!11;UBERON:0000955!6.85e-22!69;UBERON:0006238!6.85e-22!69;UBERON:0001778!1.23e-20!3;UBERON:0001775!1.23e-20!3;UBERON:0000033!3.57e-18!123;UBERON:0001049!1.06e-17!57;UBERON:0005068!1.06e-17!57;UBERON:0006241!1.06e-17!57;UBERON:0007135!1.06e-17!57;UBERON:0000153!3.64e-17!129;UBERON:0007811!3.64e-17!129;UBERON:0004121!5.64e-17!169;UBERON:0000924!1.72e-16!173;UBERON:0006601!1.72e-16!173;UBERON:0000488!1.24e-15!4;UBERON:0002360!7.31e-15!2;UBERON:0000094!7.31e-15!2;UBERON:0007645!7.31e-15!2;UBERON:0005284!2.46e-13!5;UBERON:0002203!1.32e-10!6;UBERON:0001768!1.32e-10!6;UBERON:0000119!2.45e-10!312;UBERON:0003210!2.98e-10!3;UBERON:0001896!3.93e-10!3;UBERON:0005290!3.93e-10!3;UBERON:0010096!3.93e-10!3;UBERON:0000063!1.30e-09!97;UBERON:0000483!2.10e-08!309;UBERON:0002298!2.43e-08!8;UBERON:0002363!4.72e-08!1;UBERON:0007647!4.72e-08!1;UBERON:0010115!4.72e-08!1;UBERON:0007190!7.16e-08!1;UBERON:0007023!1.14e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;9.79e-88;6!UBERON:0002680;8.03e-59;9!UBERON:0001895;8.03e-59;9!UBERON:0004733;2.40e-44;12!UBERON:0002028;2.40e-44;12!UBERON:0004732;5.29e-41;13!UBERON:0000412;2.59e-12;3!UBERON:0001992;2.59e-12;3!UBERON:0002073;6.55e-08;5!UBERON:0005284;7.25e-08;5!UBERON:0001016;7.03e-07;83!UBERON:0000073;7.27e-07;53!UBERON:0002616;7.27e-07;53 | |||
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|short_description=p9@ZIC4 | |||
}} |
Revision as of 21:59, 12 September 2013
Short description: | p9@ZIC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_ZIC4_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 218bp_to_ENST00000484399_5end |
EntrezGene: | ZIC4 |
HGNC: | 20393 |
UniProt: | Q8N9L1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 2.59e-12 | 3 |
stem cell of epidermis | 2.59e-12 | 3 |
smooth muscle cell of the brain vasculature | 2.89e-12 | 3 |
astrocyte of the cerebellum | 3.24e-12 | 3 |
hair follicle cell | 6.55e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 1.10e-87 | 6 |
rhombic lip | 1.10e-87 | 6 |
regional part of metencephalon | 8.65e-59 | 9 |
metencephalon | 8.65e-59 | 9 |
future metencephalon | 8.65e-59 | 9 |
segmental subdivision of hindbrain | 2.54e-44 | 12 |
hindbrain | 2.54e-44 | 12 |
presumptive hindbrain | 2.54e-44 | 12 |
segmental subdivision of nervous system | 5.58e-41 | 13 |
posterior neural tube | 1.25e-35 | 15 |
chordal neural plate | 1.25e-35 | 15 |
dermal papilla | 2.59e-12 | 3 |
papillary layer of dermis | 2.59e-12 | 3 |
brain | 2.95e-12 | 68 |
future brain | 2.95e-12 | 68 |
central nervous system | 2.09e-10 | 81 |
regional part of nervous system | 2.23e-10 | 53 |
regional part of brain | 2.23e-10 | 53 |
neural tube | 7.34e-10 | 56 |
neural rod | 7.34e-10 | 56 |
future spinal cord | 7.34e-10 | 56 |
neural keel | 7.34e-10 | 56 |
nervous system | 1.98e-09 | 89 |
ecto-epithelium | 2.57e-08 | 104 |
hair follicle | 6.55e-08 | 5 |
hair follicle placode | 6.55e-08 | 5 |
brain vasculature | 7.01e-08 | 5 |
ectoderm-derived structure | 3.21e-07 | 171 |
ectoderm | 3.21e-07 | 171 |
presumptive ectoderm | 3.21e-07 | 171 |
neural plate | 6.33e-07 | 82 |
presumptive neural plate | 6.33e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.