FFCP PHASE1:Mm9::chr17:46390866..46390927,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=224813|HGNC=|MCL_coexpression_id=60|UniProt=B2RWC4|association_with_transcript=-186bp_to_ENSMUST00000095262,NM_001111142,uc012auo.1,uc012aup.1_5end|description=CAGE_peak_1_at_Gm88_5end|id=chr17:46390866..46390927,+|ontology_enrichment_celltype=CL:0000221!2.79e-15!44;CL:0000133!2.79e-15!44;CL:0002319!6.94e-15!43;CL:0000055!4.16e-14!50;CL:0000393!4.84e-12!39;CL:0000211!4.84e-12!39;CL:0000540!6.74e-12!33;CL:0000047!6.74e-12!33;CL:0000031!6.74e-12!33;CL:0000404!6.74e-12!33;CL:0000117!1.90e-11!23;CL:0000337!1.90e-11!23;CL:0002321!7.93e-07!70;CL:0000220!7.93e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,4.39e-16,44;CL:0000133,4.39e-16,44;CL:0002319,1.15e-15,43;CL:0000393,1.18e-12,39;CL:0000211,1.18e-12,39;CL:0000540,1.67e-12,33;CL:0000047,1.67e-12,33;CL:0000031,1.67e-12,33;CL:0000404,1.67e-12,33;CL:0000117,5.00e-12,23;CL:0000337,5.00e-12,23;CL:0002321,1.25e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.72e-34!73;UBERON:0005743!1.72e-34!73;UBERON:0000073!9.00e-34!75;UBERON:0001016!9.00e-34!75;UBERON:0004121!1.59e-28!102;UBERON:0000924!1.59e-28!102;UBERON:0006601!1.59e-28!102;UBERON:0002346!1.94e-27!71;UBERON:0003075!1.94e-27!71;UBERON:0007284!1.94e-27!71;UBERON:0001049!4.31e-27!52;UBERON:0005068!4.31e-27!52;UBERON:0006241!4.31e-27!52;UBERON:0007135!4.31e-27!52;UBERON:0000955!3.29e-26!50;UBERON:0006238!3.29e-26!50;UBERON:0000033!7.37e-26!63;UBERON:0002616!1.46e-25!49;UBERON:0003056!1.89e-21!49;UBERON:0003080!2.47e-21!40;UBERON:0002780!8.78e-21!39;UBERON:0001890!8.78e-21!39;UBERON:0006240!8.78e-21!39;UBERON:0002020!3.75e-19!34;UBERON:0007811!2.45e-17!86;UBERON:0002791!1.59e-16!29;UBERON:0003528!1.59e-16!29;UBERON:0001893!1.59e-16!29;UBERON:0000153!7.05e-16!94;UBERON:0000956!2.28e-12!21;UBERON:0001869!2.28e-12!21;UBERON:0000203!2.28e-12!21;UBERON:0002619!7.96e-11!17;UBERON:0002021!5.57e-08!10;UBERON:0000411!5.57e-08!10;UBERON:0001950!5.57e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.97e-36,73;UBERON:0001016,1.14e-35,75;UBERON:0000073,4.74e-30,54;UBERON:0004121,1.91e-29,95;UBERON:0000924,1.91e-29,95;UBERON:0006601,1.91e-29,95;UBERON:0002346,3.72e-29,64;UBERON:0003075,3.72e-29,64;UBERON:0007284,3.72e-29,64;UBERON:0001049,1.36e-28,52;UBERON:0005068,1.36e-28,52;UBERON:0006241,1.36e-28,52;UBERON:0007135,1.36e-28,52;UBERON:0000955,8.81e-26,47;UBERON:0006238,8.81e-26,47;UBERON:0002616,4.17e-25,46;UBERON:0010371,4.02e-24,73;UBERON:0003056,1.28e-22,49;UBERON:0003080,1.70e-22,40;UBERON:0002780,6.53e-22,39;UBERON:0001890,6.53e-22,39;UBERON:0006240,6.53e-22,39;UBERON:0002020,3.48e-20,34;UBERON:0010314,8.90e-19,92;UBERON:0003528,2.11e-17,29;UBERON:0002791,2.11e-17,29;UBERON:0001893,2.11e-17,29;UBERON:0000956,5.30e-13,21;UBERON:0001869,5.30e-13,21;UBERON:0000203,5.30e-13,21;UBERON:0002619,2.28e-11,17;UBERON:0002021,2.34e-08,10;UBERON:0000411,2.34e-08,10;UBERON:0001950,2.34e-08,10|phase1_expression=35.7131929043691,0,0.909998478779072,0,0,0.503637815735669,0.700837921786577,0,2.67498572088167,3.5109678948299,1.36974374580404,2.95156988282745,0,0.0874204024189974,0.333109761815663,0,0,0.157731082679119,0,0,30.3604545839319,0.893618560807968,0.522399578277871,0,0,0,0.430761996159075,0.215471232685889,0,0.252030129759931,0,0,0.61506478758457,0,0,0,0,0,0,0,0,0,0,3.77690453926732,5.67710814829281,6.60768307782054,13.3006528539167,12.6454590700659,21.5292459079782,17.4986909166855,8.9591309840232,18.6878333674463,0.503347818173209,0,0,1.28629718017973,2.0057340795713,3.09403255366465,25.4918740683093,22.7466121086974,22.8179305262225,6.43804610931351,5.33576877666684,1.7997994345628,0.988866362566974,2.8419204597844,19.4740071836963,60.3222739354841,8.08778976006126,10.9354810048669,13.0401476037857,22.8520787523043,27.6085676189517,12.4940615199253,6.42164655822184,11.9498442259303,31.9336054898227,25.2820929408672,21.1977015893616,24.2670769423557,22.2314973953855,14.5855743755893,16.4717969410815,23.6360296213306,26.586895113165,30.3467443037878,22.2099822046601,17.7079473534036,1.66597625333005,1.43585964202892,1.15945795480671,0,0,0.539703191637817,0.649776417447669,0.448026887097336,2.94933282276679,1.87473354835864,2.07828803682295,1.7666978725517,13.0984380392313,6.41632387071589,5.09610479413291,14.2213340630666,0,0.506719730950197,0,5.02409070763864,0.258937883647172,3.71105347662062,2.77576522825817,2.43572382649713,2.53677046981664,2.26083960828934,3.52766121407114,3.64433114856059,1.23597483867187,0.289198713839823,0,1.7794353494215,0.662524555381181,0,0,10.2473278954042,10.0534419270458,0.766371165625774,0.11981512450592,0,0.254140454146129,23.5171303865572,32.0250421973039,50.1360864930329,44.8466746096073,37.3344567702283,29.9214784165767,30.0146336675352,0.916554274652847,1.11966273549084,1.0108910337347,4.20883711772948,2.73252930221678,1.14951052216736,3.78130472591233,3.46621081022145,4.49040894398764,2.562274405697,5.80950692270319,13.9699820199068,1.29340795759705,1.89106080167819,1.58356011747554,3.0687402539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| ||
|EntrezGene=224813 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=B2RWC4 | |||
|association_with_transcript=-186bp_to_ENSMUST00000095262,NM_001111142,uc012auo.1,uc012aup.1_5end | |||
|description=CAGE_peak_1_at_Gm88_5end | |||
|id=chr17:46390866..46390927,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.79e-15!44;CL:0000133!2.79e-15!44;CL:0002319!6.94e-15!43;CL:0000055!4.16e-14!50;CL:0000393!4.84e-12!39;CL:0000211!4.84e-12!39;CL:0000540!6.74e-12!33;CL:0000047!6.74e-12!33;CL:0000031!6.74e-12!33;CL:0000404!6.74e-12!33;CL:0000117!1.90e-11!23;CL:0000337!1.90e-11!23;CL:0002321!7.93e-07!70;CL:0000220!7.93e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.39e-16,44;CL:0000133,4.39e-16,44;CL:0002319,1.15e-15,43;CL:0000393,1.18e-12,39;CL:0000211,1.18e-12,39;CL:0000540,1.67e-12,33;CL:0000047,1.67e-12,33;CL:0000031,1.67e-12,33;CL:0000404,1.67e-12,33;CL:0000117,5.00e-12,23;CL:0000337,5.00e-12,23;CL:0002321,1.25e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.72e-34!73;UBERON:0005743!1.72e-34!73;UBERON:0000073!9.00e-34!75;UBERON:0001016!9.00e-34!75;UBERON:0004121!1.59e-28!102;UBERON:0000924!1.59e-28!102;UBERON:0006601!1.59e-28!102;UBERON:0002346!1.94e-27!71;UBERON:0003075!1.94e-27!71;UBERON:0007284!1.94e-27!71;UBERON:0001049!4.31e-27!52;UBERON:0005068!4.31e-27!52;UBERON:0006241!4.31e-27!52;UBERON:0007135!4.31e-27!52;UBERON:0000955!3.29e-26!50;UBERON:0006238!3.29e-26!50;UBERON:0000033!7.37e-26!63;UBERON:0002616!1.46e-25!49;UBERON:0003056!1.89e-21!49;UBERON:0003080!2.47e-21!40;UBERON:0002780!8.78e-21!39;UBERON:0001890!8.78e-21!39;UBERON:0006240!8.78e-21!39;UBERON:0002020!3.75e-19!34;UBERON:0007811!2.45e-17!86;UBERON:0002791!1.59e-16!29;UBERON:0003528!1.59e-16!29;UBERON:0001893!1.59e-16!29;UBERON:0000153!7.05e-16!94;UBERON:0000956!2.28e-12!21;UBERON:0001869!2.28e-12!21;UBERON:0000203!2.28e-12!21;UBERON:0002619!7.96e-11!17;UBERON:0002021!5.57e-08!10;UBERON:0000411!5.57e-08!10;UBERON:0001950!5.57e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.97e-36,73;UBERON:0001016,1.14e-35,75;UBERON:0000073,4.74e-30,54;UBERON:0004121,1.91e-29,95;UBERON:0000924,1.91e-29,95;UBERON:0006601,1.91e-29,95;UBERON:0002346,3.72e-29,64;UBERON:0003075,3.72e-29,64;UBERON:0007284,3.72e-29,64;UBERON:0001049,1.36e-28,52;UBERON:0005068,1.36e-28,52;UBERON:0006241,1.36e-28,52;UBERON:0007135,1.36e-28,52;UBERON:0000955,8.81e-26,47;UBERON:0006238,8.81e-26,47;UBERON:0002616,4.17e-25,46;UBERON:0010371,4.02e-24,73;UBERON:0003056,1.28e-22,49;UBERON:0003080,1.70e-22,40;UBERON:0002780,6.53e-22,39;UBERON:0001890,6.53e-22,39;UBERON:0006240,6.53e-22,39;UBERON:0002020,3.48e-20,34;UBERON:0010314,8.90e-19,92;UBERON:0003528,2.11e-17,29;UBERON:0002791,2.11e-17,29;UBERON:0001893,2.11e-17,29;UBERON:0000956,5.30e-13,21;UBERON:0001869,5.30e-13,21;UBERON:0000203,5.30e-13,21;UBERON:0002619,2.28e-11,17;UBERON:0002021,2.34e-08,10;UBERON:0000411,2.34e-08,10;UBERON:0001950,2.34e-08,10 | |||
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| |||
|short_description=p1@Gm88 | |||
}} |
Revision as of 14:39, 13 September 2013
Short description: | p1@Gm88 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm88_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -186bp_to_ENSMUST00000095262, NM_001111142, uc012auo.1, uc012aup.1_5end |
EntrezGene: | Gm88 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.39e-16 | 44 |
neurectodermal cell | 4.39e-16 | 44 |
neural cell | 1.15e-15 | 43 |
electrically responsive cell | 1.18e-12 | 39 |
electrically active cell | 1.18e-12 | 39 |
neuron | 1.67e-12 | 33 |
neuronal stem cell | 1.67e-12 | 33 |
neuroblast | 1.67e-12 | 33 |
electrically signaling cell | 1.67e-12 | 33 |
CNS neuron (sensu Vertebrata) | 5.00e-12 | 23 |
neuroblast (sensu Vertebrata) | 5.00e-12 | 23 |
embryonic cell | 1.25e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.97e-36 | 73 |
nervous system | 1.14e-35 | 75 |
regional part of nervous system | 4.74e-30 | 54 |
ectoderm-derived structure | 1.91e-29 | 95 |
ectoderm | 1.91e-29 | 95 |
presumptive ectoderm | 1.91e-29 | 95 |
neurectoderm | 3.72e-29 | 64 |
neural plate | 3.72e-29 | 64 |
presumptive neural plate | 3.72e-29 | 64 |
neural tube | 1.36e-28 | 52 |
neural rod | 1.36e-28 | 52 |
future spinal cord | 1.36e-28 | 52 |
neural keel | 1.36e-28 | 52 |
brain | 8.81e-26 | 47 |
future brain | 8.81e-26 | 47 |
regional part of brain | 4.17e-25 | 46 |
ecto-epithelium | 4.02e-24 | 73 |
pre-chordal neural plate | 1.28e-22 | 49 |
anterior neural tube | 1.70e-22 | 40 |
regional part of forebrain | 6.53e-22 | 39 |
forebrain | 6.53e-22 | 39 |
future forebrain | 6.53e-22 | 39 |
gray matter | 3.48e-20 | 34 |
structure with developmental contribution from neural crest | 8.90e-19 | 92 |
brain grey matter | 2.11e-17 | 29 |
regional part of telencephalon | 2.11e-17 | 29 |
telencephalon | 2.11e-17 | 29 |
cerebral cortex | 5.30e-13 | 21 |
cerebral hemisphere | 5.30e-13 | 21 |
pallium | 5.30e-13 | 21 |
regional part of cerebral cortex | 2.28e-11 | 17 |
occipital lobe | 2.34e-08 | 10 |
visual cortex | 2.34e-08 | 10 |
neocortex | 2.34e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.