FFCP PHASE1:Mm9::chr1:135586502..135586513,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=240754|HGNC=|MCL_coexpression_id=1739|UniProt=Q8BHB3|association_with_transcript=79bp_to_ENSMUST00000063620,NM_172842,uc007cqt.2_5end|description=CAGE_peak_5_at_Lax1_5end|id=chr1:135586502..135586513,-|ontology_enrichment_celltype=CL:0000838!1.05e-10!12;CL:0002031!2.26e-10!25;CL:0000791!3.77e-10!9;CL:0000789!3.77e-10!9;CL:0002420!3.77e-10!9;CL:0002419!3.77e-10!9;CL:0000790!3.77e-10!9;CL:0000084!1.26e-09!11;CL:0000827!1.26e-09!11;CL:0000542!1.33e-09!13;CL:0000051!1.33e-09!13;CL:0000624!4.40e-09!8;CL:0000988!7.66e-08!32;CL:0002032!7.66e-08!32;CL:0000037!7.66e-08!32;CL:0000566!7.66e-08!32;CL:0000837!7.66e-08!32;CL:0000553!1.39e-07!6;CL:0000556!1.39e-07!6;CL:0000893!7.51e-07!6;CL:0002489!7.51e-07!6;CL:0000898!7.51e-07!6;CL:0000809!7.51e-07!6;CL:0000810!7.51e-07!6;CL:0000895!7.51e-07!6;CL:0000808!7.51e-07!6;CL:0000894!7.51e-07!6;CL:0000806!7.51e-07!6;CL:0000807!7.51e-07!6;CL:0000805!7.51e-07!6;CL:0002425!7.51e-07!6;CL:0002436!7.51e-07!6;CL:0002427!7.51e-07!6;CL:0002428!7.51e-07!6;CL:0002429!7.51e-07!6;CL:0002433!7.51e-07!6;CL:0002431!7.51e-07!6;CL:0002432!7.51e-07!6|ontology_enrichment_celltype_v019_2=CL:0002031,5.13e-16,25;CL:0000553,5.58e-13,6;CL:0000556,5.58e-13,6;CL:0000791,2.33e-12,9;CL:0000789,2.33e-12,9;CL:0002420,2.33e-12,9;CL:0002419,2.33e-12,9;CL:0000790,2.33e-12,9;CL:0000838,2.64e-12,12;CL:0000988,5.65e-12,32;CL:0002032,5.65e-12,32;CL:0000037,5.65e-12,32;CL:0000837,5.65e-12,32;CL:0000542,2.79e-11,13;CL:0000051,2.79e-11,13;CL:0000084,5.46e-10,11;CL:0000827,5.46e-10,11;CL:0000624,6.74e-10,8;CL:0000050,1.51e-08,9;CL:0000738,2.17e-08,17;CL:0002087,2.17e-08,17;CL:0002320,1.35e-07,46;CL:0000134,1.35e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!9.11e-21!48;UBERON:0004177!6.44e-20!29;UBERON:0002390!8.28e-18!45;UBERON:0003061!8.28e-18!45;UBERON:0003408!3.64e-16!24;UBERON:0002370!2.99e-15!23;UBERON:0000974!2.99e-15!23;UBERON:0004807!2.99e-15!23;UBERON:0005058!2.99e-15!23;UBERON:0003351!2.99e-15!23;UBERON:0009113!2.99e-15!23;UBERON:0003295!2.99e-15!23;UBERON:0009722!2.99e-15!23;UBERON:0005562!2.99e-15!23;UBERON:0007690!2.99e-15!23;UBERON:0006562!2.54e-14!24;UBERON:0001557!2.54e-14!24;UBERON:0001042!2.54e-14!24;UBERON:0008814!2.54e-14!24;UBERON:0009145!2.54e-14!24;UBERON:0002405!6.44e-14!70;UBERON:0000072!5.74e-12!27;UBERON:0005057!5.69e-11!51;UBERON:0001004!1.16e-09!42;UBERON:0000065!5.60e-09!41;UBERON:0000063!7.95e-09!35;UBERON:0003081!8.82e-09!88|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.39e-23,48;UBERON:0002405,2.39e-23,48;UBERON:0002390,1.06e-17,45;UBERON:0003061,1.06e-17,45;UBERON:0004177,2.17e-14,29;UBERON:0005057,2.17e-14,29;UBERON:0003408,1.29e-12,24;UBERON:0000077,1.74e-11,35;UBERON:0002370,5.92e-11,23;UBERON:0000974,5.92e-11,23;UBERON:0004807,5.92e-11,23;UBERON:0005058,5.92e-11,23;UBERON:0003351,5.92e-11,23;UBERON:0009113,5.92e-11,23;UBERON:0003295,5.92e-11,23;UBERON:0009722,5.92e-11,23;UBERON:0005562,5.92e-11,23;UBERON:0007690,5.92e-11,23;UBERON:0006562,2.01e-10,24;UBERON:0001557,2.01e-10,24;UBERON:0001042,2.01e-10,24;UBERON:0008814,2.01e-10,24;UBERON:0009145,2.01e-10,24;UBERON:0002465,4.27e-10,3;UBERON:0000072,4.52e-09,27;UBERON:0007811,9.67e-08,36;UBERON:0002384,1.35e-07,46;UBERON:0003081,2.32e-07,87;UBERON:0001962,5.89e-07,2;UBERON:0001961,5.89e-07,2;UBERON:0001744,5.89e-07,2|phase1_expression=0,0,0,0,0,0,0,5.4231795845462,3.09735188733667,2.57470978954193,0.34243593645101,0.638177271962691,2.56801094896809,0.786783621770977,1.33243904726265,1.41732687172878,0.699561878128147,5.0473946457318,5.62169177783529,4.66828616977833,0.0850432901510698,0.695036658406197,0,2.07990149631429,2.06468352960453,0,0,0,0.190023419456374,0.756090389279792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53013036355888,3.62681071005672,3.02484419228218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,6.47344709117929,0.593768556259299,0,0.304465478312141,0,0,0.117588707135705,0,0,0,0.884610551949874,0,0,0,0,0,0,0.766371165625774,0.479260498023681,0,0,0,0,0,0,0,0,0,0,0.497627882440372,0,0,0,0,0.180062129805349,0,0,0,0.0937017245597288,0.258703370739016,0,0,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0.164167464079095,0,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0.398282546508734,0,0.114248512609729,1.1270773567308,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0.372140947668503,0.312037673114561,0.252578877947112,0,0,0.739012760666419,0,0,0,0,0,0,0,0,0,0,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0.827810238914197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0.291480836629851,0,1.70870880797853,0.206386867963223,0.185194527369712,0.376736914009382,1.23024804948923,2.0590035588587,4.75939603982795,2.09927178485487,5.2515990045681,0,0,0,0,0,0,0,0.0826534557253359,0,0.129614973291793,1.24267862617385,0,0,0,0,0.129159823477731,0,0,0,0.104859344425711,0,0,0.316011120628178,1.01362607645082,1.33524244314275,0.649604114888975,0.537080087002444,1.39076948346885,1.20195449519969,0.590758108698309,0.403865799792591,0.762068066549998,0.705783295957884,1.36441033035653,1.44317762460494,2.33753804363138,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0.341467211508268,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0.169229215783353,0,0,0,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0,0,0.467863216890817,0,0,0.220591419119515,0|short_description=p5@Lax1}} | ||
|EntrezGene=240754 | |||
|HGNC= | |||
|MCL_coexpression_id=1739 | |||
|UniProt=Q8BHB3 | |||
|association_with_transcript=79bp_to_ENSMUST00000063620,NM_172842,uc007cqt.2_5end | |||
|description=CAGE_peak_5_at_Lax1_5end | |||
|id=chr1:135586502..135586513,- | |||
|ontology_enrichment_celltype=CL:0000838!1.05e-10!12;CL:0002031!2.26e-10!25;CL:0000791!3.77e-10!9;CL:0000789!3.77e-10!9;CL:0002420!3.77e-10!9;CL:0002419!3.77e-10!9;CL:0000790!3.77e-10!9;CL:0000084!1.26e-09!11;CL:0000827!1.26e-09!11;CL:0000542!1.33e-09!13;CL:0000051!1.33e-09!13;CL:0000624!4.40e-09!8;CL:0000988!7.66e-08!32;CL:0002032!7.66e-08!32;CL:0000037!7.66e-08!32;CL:0000566!7.66e-08!32;CL:0000837!7.66e-08!32;CL:0000553!1.39e-07!6;CL:0000556!1.39e-07!6;CL:0000893!7.51e-07!6;CL:0002489!7.51e-07!6;CL:0000898!7.51e-07!6;CL:0000809!7.51e-07!6;CL:0000810!7.51e-07!6;CL:0000895!7.51e-07!6;CL:0000808!7.51e-07!6;CL:0000894!7.51e-07!6;CL:0000806!7.51e-07!6;CL:0000807!7.51e-07!6;CL:0000805!7.51e-07!6;CL:0002425!7.51e-07!6;CL:0002436!7.51e-07!6;CL:0002427!7.51e-07!6;CL:0002428!7.51e-07!6;CL:0002429!7.51e-07!6;CL:0002433!7.51e-07!6;CL:0002431!7.51e-07!6;CL:0002432!7.51e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,5.13e-16,25;CL:0000553,5.58e-13,6;CL:0000556,5.58e-13,6;CL:0000791,2.33e-12,9;CL:0000789,2.33e-12,9;CL:0002420,2.33e-12,9;CL:0002419,2.33e-12,9;CL:0000790,2.33e-12,9;CL:0000838,2.64e-12,12;CL:0000988,5.65e-12,32;CL:0002032,5.65e-12,32;CL:0000037,5.65e-12,32;CL:0000837,5.65e-12,32;CL:0000542,2.79e-11,13;CL:0000051,2.79e-11,13;CL:0000084,5.46e-10,11;CL:0000827,5.46e-10,11;CL:0000624,6.74e-10,8;CL:0000050,1.51e-08,9;CL:0000738,2.17e-08,17;CL:0002087,2.17e-08,17;CL:0002320,1.35e-07,46;CL:0000134,1.35e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!9.11e-21!48;UBERON:0004177!6.44e-20!29;UBERON:0002390!8.28e-18!45;UBERON:0003061!8.28e-18!45;UBERON:0003408!3.64e-16!24;UBERON:0002370!2.99e-15!23;UBERON:0000974!2.99e-15!23;UBERON:0004807!2.99e-15!23;UBERON:0005058!2.99e-15!23;UBERON:0003351!2.99e-15!23;UBERON:0009113!2.99e-15!23;UBERON:0003295!2.99e-15!23;UBERON:0009722!2.99e-15!23;UBERON:0005562!2.99e-15!23;UBERON:0007690!2.99e-15!23;UBERON:0006562!2.54e-14!24;UBERON:0001557!2.54e-14!24;UBERON:0001042!2.54e-14!24;UBERON:0008814!2.54e-14!24;UBERON:0009145!2.54e-14!24;UBERON:0002405!6.44e-14!70;UBERON:0000072!5.74e-12!27;UBERON:0005057!5.69e-11!51;UBERON:0001004!1.16e-09!42;UBERON:0000065!5.60e-09!41;UBERON:0000063!7.95e-09!35;UBERON:0003081!8.82e-09!88 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.39e-23,48;UBERON:0002405,2.39e-23,48;UBERON:0002390,1.06e-17,45;UBERON:0003061,1.06e-17,45;UBERON:0004177,2.17e-14,29;UBERON:0005057,2.17e-14,29;UBERON:0003408,1.29e-12,24;UBERON:0000077,1.74e-11,35;UBERON:0002370,5.92e-11,23;UBERON:0000974,5.92e-11,23;UBERON:0004807,5.92e-11,23;UBERON:0005058,5.92e-11,23;UBERON:0003351,5.92e-11,23;UBERON:0009113,5.92e-11,23;UBERON:0003295,5.92e-11,23;UBERON:0009722,5.92e-11,23;UBERON:0005562,5.92e-11,23;UBERON:0007690,5.92e-11,23;UBERON:0006562,2.01e-10,24;UBERON:0001557,2.01e-10,24;UBERON:0001042,2.01e-10,24;UBERON:0008814,2.01e-10,24;UBERON:0009145,2.01e-10,24;UBERON:0002465,4.27e-10,3;UBERON:0000072,4.52e-09,27;UBERON:0007811,9.67e-08,36;UBERON:0002384,1.35e-07,46;UBERON:0003081,2.32e-07,87;UBERON:0001962,5.89e-07,2;UBERON:0001961,5.89e-07,2;UBERON:0001744,5.89e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,5.4231795845462,3.09735188733667,2.57470978954193,0.34243593645101,0.638177271962691,2.56801094896809,0.786783621770977,1.33243904726265,1.41732687172878,0.699561878128147,5.0473946457318,5.62169177783529,4.66828616977833,0.0850432901510698,0.695036658406197,0,2.07990149631429,2.06468352960453,0,0,0,0.190023419456374,0.756090389279792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53013036355888,3.62681071005672,3.02484419228218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,6.47344709117929,0.593768556259299,0,0.304465478312141,0,0,0.117588707135705,0,0,0,0.884610551949874,0,0,0,0,0,0,0.766371165625774,0.479260498023681,0,0,0,0,0,0,0,0,0,0,0.497627882440372,0,0,0,0,0.180062129805349,0,0,0,0.0937017245597288,0.258703370739016,0,0,0.175951124163949,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116765342367169,0,0.164167464079095,0,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0.398282546508734,0,0.114248512609729,1.1270773567308,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0.372140947668503,0.312037673114561,0.252578877947112,0,0,0.739012760666419,0,0,0,0,0,0,0,0,0,0,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0.827810238914197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0.291480836629851,0,1.70870880797853,0.206386867963223,0.185194527369712,0.376736914009382,1.23024804948923,2.0590035588587,4.75939603982795,2.09927178485487,5.2515990045681,0,0,0,0,0,0,0,0.0826534557253359,0,0.129614973291793,1.24267862617385,0,0,0,0,0.129159823477731,0,0,0,0.104859344425711,0,0,0.316011120628178,1.01362607645082,1.33524244314275,0.649604114888975,0.537080087002444,1.39076948346885,1.20195449519969,0.590758108698309,0.403865799792591,0.762068066549998,0.705783295957884,1.36441033035653,1.44317762460494,2.33753804363138,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0.341467211508268,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0.169229215783353,0,0,0,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0,0,0.467863216890817,0,0,0.220591419119515,0 | |||
|short_description=p5@Lax1 | |||
}} |
Revision as of 18:54, 13 September 2013
Short description: | p5@Lax1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lax1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1739 |
Association with transcript: | 79bp_to_ENSMUST00000063620, NM_172842, uc007cqt.2_5end |
EntrezGene: | Lax1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 5.13e-16 | 25 |
megakaryocyte progenitor cell | 5.58e-13 | 6 |
megakaryocyte | 5.58e-13 | 6 |
mature alpha-beta T cell | 2.33e-12 | 9 |
alpha-beta T cell | 2.33e-12 | 9 |
immature T cell | 2.33e-12 | 9 |
mature T cell | 2.33e-12 | 9 |
immature alpha-beta T cell | 2.33e-12 | 9 |
lymphoid lineage restricted progenitor cell | 2.64e-12 | 12 |
hematopoietic cell | 5.65e-12 | 32 |
hematopoietic oligopotent progenitor cell | 5.65e-12 | 32 |
hematopoietic stem cell | 5.65e-12 | 32 |
hematopoietic multipotent progenitor cell | 5.65e-12 | 32 |
lymphocyte | 2.79e-11 | 13 |
common lymphoid progenitor | 2.79e-11 | 13 |
T cell | 5.46e-10 | 11 |
pro-T cell | 5.46e-10 | 11 |
CD4-positive, alpha-beta T cell | 6.74e-10 | 8 |
megakaryocyte-erythroid progenitor cell | 1.51e-08 | 9 |
leukocyte | 2.17e-08 | 17 |
nongranular leukocyte | 2.17e-08 | 17 |
connective tissue cell | 1.35e-07 | 46 |
mesenchymal cell | 1.35e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.39e-23 | 48 |
immune system | 2.39e-23 | 48 |
hematopoietic system | 1.06e-17 | 45 |
blood island | 1.06e-17 | 45 |
hemopoietic organ | 2.17e-14 | 29 |
immune organ | 2.17e-14 | 29 |
gland of gut | 1.29e-12 | 24 |
mixed endoderm/mesoderm-derived structure | 1.74e-11 | 35 |
thymus | 5.92e-11 | 23 |
neck | 5.92e-11 | 23 |
respiratory system epithelium | 5.92e-11 | 23 |
hemolymphoid system gland | 5.92e-11 | 23 |
pharyngeal epithelium | 5.92e-11 | 23 |
thymic region | 5.92e-11 | 23 |
pharyngeal gland | 5.92e-11 | 23 |
entire pharyngeal arch endoderm | 5.92e-11 | 23 |
thymus primordium | 5.92e-11 | 23 |
early pharyngeal endoderm | 5.92e-11 | 23 |
pharynx | 2.01e-10 | 24 |
upper respiratory tract | 2.01e-10 | 24 |
chordate pharynx | 2.01e-10 | 24 |
pharyngeal arch system | 2.01e-10 | 24 |
pharyngeal region of foregut | 2.01e-10 | 24 |
lymphoid system | 4.27e-10 | 3 |
segment of respiratory tract | 4.52e-09 | 27 |
craniocervical region | 9.67e-08 | 36 |
connective tissue | 1.35e-07 | 46 |
lateral plate mesoderm | 2.32e-07 | 87 |
gut-associated lymphoid tissue | 5.89e-07 | 2 |
mucosa-associated lymphoid tissue | 5.89e-07 | 2 |
lymphoid tissue | 5.89e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.