FFCP PHASE1:Hg19::chr8:114186065..114186067,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=114788|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19291|TSSclassifier=S|UniProt=|association_with_transcript=-16bp_to_ENST00000519485_5end|coexpression_cluster_id=C16|description=CAGE_peak_9_at_CSMD3_5end|id=chr8:114186065..114186067,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3371!5.78e-07!1;DOID:4549!5.78e-07!1;DOID:5861!5.78e-07!1;DOID:6496!5.78e-07!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002780!7.65e-51!41;UBERON:0001890!7.65e-51!41;UBERON:0006240!7.65e-51!41;UBERON:0003080!1.46e-49!42;UBERON:0001049!9.12e-48!57;UBERON:0005068!9.12e-48!57;UBERON:0006241!9.12e-48!57;UBERON:0007135!9.12e-48!57;UBERON:0001893!3.69e-44!34;UBERON:0002616!6.73e-42!59;UBERON:0001869!9.96e-42!32;UBERON:0002791!2.17e-40!33;UBERON:0003056!1.46e-36!61;UBERON:0003075!3.57e-36!86;UBERON:0007284!3.57e-36!86;UBERON:0005743!1.05e-35!86;UBERON:0000955!1.10e-34!69;UBERON:0006238!1.10e-34!69;UBERON:0001017!1.53e-34!82;UBERON:0002020!1.92e-34!34;UBERON:0003528!1.92e-34!34;UBERON:0002346!2.34e-34!90;UBERON:0000073!6.49e-32!94;UBERON:0001016!6.49e-32!94;UBERON:0002619!7.82e-29!22;UBERON:0001950!3.81e-26!20;UBERON:0000956!2.90e-25!25;UBERON:0000203!2.90e-25!25;UBERON:0007023!8.86e-24!115;UBERON:0000033!1.41e-21!123;UBERON:0000153!2.33e-20!129;UBERON:0007811!2.33e-20!129;UBERON:0001871!2.32e-18!7;UBERON:0004121!2.49e-17!169;UBERON:0000924!8.15e-17!173;UBERON:0006601!8.15e-17!173;UBERON:0002420!3.45e-16!9;UBERON:0007245!3.45e-16!9;UBERON:0010009!3.45e-16!9;UBERON:0010011!3.45e-16!9;UBERON:0000454!3.45e-16!9;UBERON:0000369!9.87e-14!4;UBERON:0002435!9.87e-14!4;UBERON:0000204!9.87e-14!4;UBERON:0010082!9.87e-14!4;UBERON:0009663!1.61e-13!7;UBERON:0001897!1.28e-12!2;UBERON:0002021!1.77e-11!5;UBERON:0000349!2.78e-11!5;UBERON:0000025!8.26e-11!194;UBERON:0002308!1.52e-10!9;UBERON:0000125!1.52e-10!9;UBERON:0000200!2.64e-09!6;UBERON:0002771!5.06e-09!3;UBERON:0005383!7.48e-09!3;UBERON:0005382!7.48e-09!3;UBERON:0001894!5.00e-08!7;UBERON:0006222!5.00e-08!7;UBERON:0004111!8.71e-08!241;UBERON:0003112!2.10e-07!1;UBERON:0000032!2.10e-07!1;UBERON:0005253!2.10e-07!1;UBERON:0003128!2.10e-07!1;UBERON:0002241!2.10e-07!1;UBERON:0001703!2.10e-07!1;UBERON:0004761!2.10e-07!1;UBERON:0009617!2.10e-07!1;UBERON:0001874!2.52e-07!1;UBERON:0000483!3.05e-07!309;UBERON:0000119!4.03e-07!312;UBERON:0001882!5.45e-07!1;UBERON:0005403!5.45e-07!1;UBERON:0002022!7.29e-07!1|ontology_enrichment_uberon_v019=UBERON:0002771;3.61e-34;2!UBERON:0001897;5.96e-34;2!UBERON:0010225;5.96e-34;2!UBERON:0002784;9.45e-18;4!UBERON:0002021;1.71e-14;5!UBERON:0001950;1.05e-13;20!UBERON:0002619;1.29e-12;22!UBERON:0000200;2.19e-12;6!UBERON:0000956;2.70e-11;25!UBERON:0000203;2.70e-11;25!UBERON:0001871;8.16e-11;6!UBERON:0001894;9.43e-11;7!UBERON:0003528;1.23e-08;34!UBERON:0002791;1.23e-08;32!UBERON:0002020;1.23e-08;34!UBERON:0001869;1.23e-08;32!UBERON:0000073;1.64e-07;53!UBERON:0002616;1.64e-07;53!UBERON:0002780;4.19e-07;41!UBERON:0001890;4.19e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002771,3.61e-34,2;UBERON:0001897,5.04e-34,2;UBERON:0010225,5.04e-34,2;UBERON:0002784,8.69e-18,4;UBERON:0002780,3.52e-15,41;UBERON:0001890,3.52e-15,41;UBERON:0003080,3.52e-15,41;UBERON:0006240,3.52e-15,41;UBERON:0002021,1.83e-14,5;UBERON:0001950,1.09e-13,20;UBERON:0002619,1.33e-12,22;UBERON:0000200,2.19e-12,6;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0000956,2.77e-11,25;UBERON:0000203,2.77e-11,25;UBERON:0001871,8.16e-11,6;UBERON:0001894,8.99e-11,7;UBERON:0006222,8.99e-11,7;UBERON:0003056,1.22e-10,61;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0002791,3.95e-09,32;UBERON:0001869,3.95e-09,32;UBERON:0003528,1.14e-08,34;UBERON:0002020,1.14e-08,34;UBERON:0001893,1.14e-08,34;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=114788 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19291 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-16bp_to_ENST00000519485_5end | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_9_at_CSMD3_5end | |||
|id=chr8:114186065..114186067,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!5.78e-07!1;DOID:4549!5.78e-07!1;DOID:5861!5.78e-07!1;DOID:6496!5.78e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!7.65e-51!41;UBERON:0001890!7.65e-51!41;UBERON:0006240!7.65e-51!41;UBERON:0003080!1.46e-49!42;UBERON:0001049!9.12e-48!57;UBERON:0005068!9.12e-48!57;UBERON:0006241!9.12e-48!57;UBERON:0007135!9.12e-48!57;UBERON:0001893!3.69e-44!34;UBERON:0002616!6.73e-42!59;UBERON:0001869!9.96e-42!32;UBERON:0002791!2.17e-40!33;UBERON:0003056!1.46e-36!61;UBERON:0003075!3.57e-36!86;UBERON:0007284!3.57e-36!86;UBERON:0005743!1.05e-35!86;UBERON:0000955!1.10e-34!69;UBERON:0006238!1.10e-34!69;UBERON:0001017!1.53e-34!82;UBERON:0002020!1.92e-34!34;UBERON:0003528!1.92e-34!34;UBERON:0002346!2.34e-34!90;UBERON:0000073!6.49e-32!94;UBERON:0001016!6.49e-32!94;UBERON:0002619!7.82e-29!22;UBERON:0001950!3.81e-26!20;UBERON:0000956!2.90e-25!25;UBERON:0000203!2.90e-25!25;UBERON:0007023!8.86e-24!115;UBERON:0000033!1.41e-21!123;UBERON:0000153!2.33e-20!129;UBERON:0007811!2.33e-20!129;UBERON:0001871!2.32e-18!7;UBERON:0004121!2.49e-17!169;UBERON:0000924!8.15e-17!173;UBERON:0006601!8.15e-17!173;UBERON:0002420!3.45e-16!9;UBERON:0007245!3.45e-16!9;UBERON:0010009!3.45e-16!9;UBERON:0010011!3.45e-16!9;UBERON:0000454!3.45e-16!9;UBERON:0000369!9.87e-14!4;UBERON:0002435!9.87e-14!4;UBERON:0000204!9.87e-14!4;UBERON:0010082!9.87e-14!4;UBERON:0009663!1.61e-13!7;UBERON:0001897!1.28e-12!2;UBERON:0002021!1.77e-11!5;UBERON:0000349!2.78e-11!5;UBERON:0000025!8.26e-11!194;UBERON:0002308!1.52e-10!9;UBERON:0000125!1.52e-10!9;UBERON:0000200!2.64e-09!6;UBERON:0002771!5.06e-09!3;UBERON:0005383!7.48e-09!3;UBERON:0005382!7.48e-09!3;UBERON:0001894!5.00e-08!7;UBERON:0006222!5.00e-08!7;UBERON:0004111!8.71e-08!241;UBERON:0003112!2.10e-07!1;UBERON:0000032!2.10e-07!1;UBERON:0005253!2.10e-07!1;UBERON:0003128!2.10e-07!1;UBERON:0002241!2.10e-07!1;UBERON:0001703!2.10e-07!1;UBERON:0004761!2.10e-07!1;UBERON:0009617!2.10e-07!1;UBERON:0001874!2.52e-07!1;UBERON:0000483!3.05e-07!309;UBERON:0000119!4.03e-07!312;UBERON:0001882!5.45e-07!1;UBERON:0005403!5.45e-07!1;UBERON:0002022!7.29e-07!1 | |||
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|short_description=p9@CSMD3 | |||
}} |
Revision as of 03:10, 14 September 2013
Short description: | p9@CSMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_CSMD3_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | -16bp_to_ENST00000519485_5end |
EntrezGene: | CSMD3 |
HGNC: | 19291 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 3.61e-34 | 2 |
dorsal plus ventral thalamus | 5.04e-34 | 2 |
thalamic complex | 5.04e-34 | 2 |
regional part of diencephalon | 8.69e-18 | 4 |
regional part of forebrain | 3.52e-15 | 41 |
forebrain | 3.52e-15 | 41 |
anterior neural tube | 3.52e-15 | 41 |
future forebrain | 3.52e-15 | 41 |
occipital lobe | 1.83e-14 | 5 |
neocortex | 1.09e-13 | 20 |
regional part of cerebral cortex | 1.33e-12 | 22 |
gyrus | 2.19e-12 | 6 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
cerebral cortex | 2.77e-11 | 25 |
pallium | 2.77e-11 | 25 |
temporal lobe | 8.16e-11 | 6 |
diencephalon | 8.99e-11 | 7 |
future diencephalon | 8.99e-11 | 7 |
pre-chordal neural plate | 1.22e-10 | 61 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
regional part of telencephalon | 3.95e-09 | 32 |
cerebral hemisphere | 3.95e-09 | 32 |
brain grey matter | 1.14e-08 | 34 |
gray matter | 1.14e-08 | 34 |
telencephalon | 1.14e-08 | 34 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.