FFCP PHASE1:Hg19::chr8:16425043..16425061,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4481|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7376|TSSclassifier=S|UniProt=|association_with_transcript=-44bp_to_ENST00000522130_5end|coexpression_cluster_id=C1515|description=CAGE_peak_5_at_MSR1_5end|id=chr8:16425043..16425061,-|ontology_enrichment_celltype=CL:0002139!1.16e-65!24;CL:0000115!1.18e-56!35;CL:0000071!1.23e-45!18;CL:0002546!1.23e-45!18;CL:0002078!1.19e-43!44;CL:0000213!3.94e-32!57;CL:0000215!3.94e-32!57;CL:1000413!2.20e-29!9;CL:0005020!1.17e-21!6;CL:0002138!1.17e-21!6;CL:0005022!1.17e-21!6;CL:0002544!6.17e-20!6;CL:0000222!4.45e-17!119;CL:0000076!5.73e-12!62;CL:0002144!9.10e-12!3;CL:0002543!2.33e-09!6;CL:0000666!1.33e-08!4;CL:0002188!1.33e-08!4;CL:1000612!3.90e-08!7;CL:1000746!3.90e-08!7;CL:0002545!4.09e-08!2;CL:0000220!4.44e-07!246;CL:0002321!5.79e-07!248|ontology_enrichment_celltype_v019=CL:0002139;3.97e-54;24!CL:0002138;4.37e-48;6!CL:0000115;9.60e-44;36!CL:0002078;4.59e-32;45!CL:0002144;4.20e-25;3!CL:0000071;5.24e-21;18!CL:0000213;1.23e-20;58!CL:0000215;1.23e-20;58!CL:0002188;6.82e-15;5!CL:0002573;3.79e-12;2!CL:1000746;8.52e-11;7!CL:1000612;8.52e-11;7!CL:0000222;2.16e-09;1!CL:1000413;1.70e-08;9|ontology_enrichment_celltype_v019_2=CL:0002139,2.81e-54,24;CL:0000115,5.98e-54,36;CL:0005020,4.56e-48,6;CL:0002138,4.56e-48,6;CL:0005022,4.56e-48,6;CL:0002078,1.30e-42,45;CL:0000213,1.94e-32,58;CL:0000215,1.94e-32,58;CL:0002144,4.21e-25,3;CL:0000071,4.05e-21,18;CL:0002546,4.05e-21,18;CL:0000222,4.36e-16,121;CL:0002188,9.98e-15,5;CL:0002573,3.69e-12,2;CL:1000746,1.12e-10,7;CL:1000612,1.12e-10,7;CL:1000413,1.53e-08,9;CL:0002321,3.67e-08,250;CL:0000076,4.10e-07,63;CL:0000066,4.93e-07,253|ontology_enrichment_development_v019=CL:0005022;4.37e-48;6!CL:0002546;5.24e-21;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060085;3.98e-09;1!DOID:3165;3.98e-09;1!DOID:0060121;3.98e-09;1!DOID:2438;3.98e-09;1!DOID:4418;3.98e-09;1|ontology_enrichment_disease_v019_2=DOID:0060085,3.00e-09,1;DOID:3165,3.00e-09,1;DOID:0060121,3.00e-09,1;DOID:2438,3.00e-09,1;DOID:4418,3.00e-09,1|ontology_enrichment_uberon=UBERON:0001986!1.23e-45!18;UBERON:0004638!1.23e-45!18;UBERON:0004852!1.23e-45!18;UBERON:0000487!1.41e-36!22;UBERON:0006914!1.10e-31!25;UBERON:0003915!2.20e-29!9;UBERON:0004700!2.20e-29!9;UBERON:0001917!2.20e-29!9;UBERON:0000055!5.93e-25!69;UBERON:0002049!5.89e-21!79;UBERON:0007798!5.89e-21!79;UBERON:0001473!4.72e-16!8;UBERON:0004536!4.72e-16!8;UBERON:0006558!4.72e-16!8;UBERON:0001981!9.84e-16!60;UBERON:0007500!9.84e-16!60;UBERON:0004537!9.84e-16!60;UBERON:0006965!9.84e-16!60;UBERON:0004535!3.08e-13!110;UBERON:0001009!1.01e-12!113;UBERON:0002465!1.10e-12!10;UBERON:0001915!9.10e-12!3;UBERON:0001982!9.10e-12!3;UBERON:0003914!1.70e-10!118;UBERON:0004872!6.52e-10!84;UBERON:0004111!2.08e-09!241;UBERON:0000477!3.01e-09!286;UBERON:0000074!3.90e-08!7;UBERON:0001229!3.90e-08!7;UBERON:0001230!3.90e-08!7;UBERON:0005749!3.90e-08!7;UBERON:0004199!3.90e-08!7;UBERON:0004209!3.90e-08!7;UBERON:0004198!3.90e-08!7;UBERON:0005800!4.09e-08!2;UBERON:0001515!4.09e-08!2;UBERON:0000490!5.71e-08!138;UBERON:0001637!1.89e-07!42;UBERON:0003509!1.89e-07!42;UBERON:0004572!1.89e-07!42;UBERON:0000025!2.27e-07!194|ontology_enrichment_uberon_v019=UBERON:0001473;5.42e-36;8!UBERON:0004536;5.42e-36;8!UBERON:0006558;5.42e-36;8!UBERON:0002465;9.98e-29;10!UBERON:0010523;4.20e-25;3!UBERON:0001915;4.20e-25;3!UBERON:0001982;4.20e-25;3!UBERON:0004638;5.24e-21;18!UBERON:0001986;5.24e-21;18!UBERON:0004852;5.24e-21;18!UBERON:0000487;4.67e-17;22!UBERON:0006914;6.38e-15;25!UBERON:0000055;8.25e-15;65!UBERON:0002405;7.20e-14;27!UBERON:0000074;8.52e-11;7!UBERON:0001229;8.52e-11;7!UBERON:0000490;7.88e-10;33!UBERON:0002049;5.70e-09;75!UBERON:0007798;5.70e-09;75!UBERON:0003915;1.70e-08;9!UBERON:0004700;1.70e-08;9!UBERON:0001917;1.70e-08;9!UBERON:0002193;1.48e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0001473,5.59e-36,8;UBERON:0004536,5.59e-36,8;UBERON:0006558,5.59e-36,8;UBERON:0002465,1.02e-28,10;UBERON:0010523,4.21e-25,3;UBERON:0001915,4.21e-25,3;UBERON:0001982,4.21e-25,3;UBERON:0004638,4.05e-21,18;UBERON:0001986,4.05e-21,18;UBERON:0004852,4.05e-21,18;UBERON:0000055,1.04e-17,68;UBERON:0000487,3.79e-17,22;UBERON:0002049,3.82e-15,78;UBERON:0007798,3.82e-15,78;UBERON:0006914,5.31e-15,25;UBERON:0010532,1.12e-10,7;UBERON:0000074,1.12e-10,7;UBERON:0001229,1.12e-10,7;UBERON:0001230,1.12e-10,7;UBERON:0003220,1.12e-10,7;UBERON:0005749,1.12e-10,7;UBERON:0004199,1.12e-10,7;UBERON:0004209,1.12e-10,7;UBERON:0004198,1.12e-10,7;UBERON:0004535,3.49e-10,109;UBERON:0001009,7.54e-10,112;UBERON:0005103,2.08e-09,8;UBERON:0000083,2.08e-09,8;UBERON:0009201,2.08e-09,8;UBERON:0006553,2.08e-09,8;UBERON:0003074,2.08e-09,8;UBERON:0003060,2.08e-09,8;UBERON:0003915,1.53e-08,9;UBERON:0004700,1.53e-08,9;UBERON:0001917,1.53e-08,9;UBERON:0000080,2.04e-08,9;UBERON:0002120,2.04e-08,9;UBERON:0004875,2.04e-08,9;UBERON:0005721,2.04e-08,9;UBERON:0005754,2.04e-08,9;UBERON:0007297,2.04e-08,9;UBERON:0004111,1.61e-07,240;UBERON:0004876,5.68e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79504962946682,0.860234595106124,0.347140501607594,0.56530794192401,0.838998872419812,1.6507082516404,1.67195973229448,16.0218390684984,17.0767806089621,48.8692094636419,4.83395180530976,4.56163263431108,4.39311703586705,6.61793544622564,0.81014194788176,1.87529429396568,0,0.675668882899933,0,0.949265659568129,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,1.58803092537181,1.38895653772983,2.47330397904978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0.510281115829547,1.0795795805107,7.71136263451447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0.638063562472921,0,0,0,0,0,0,0,0.55597265731176,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426851060090485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3269511191747,0.886642856860642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0,0.687944129886466,0,0,0,0,0,0,0,1.78843150532691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,2.21760706690754,0,0,0,0,2.034148301238,0,0,0,0,0.492555124496034,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52369796457302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,16.5664801022791,19.0878026660513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82315897372553,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,1.34558235096736,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0|short_description=p5@MSR1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4481 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7376 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-44bp_to_ENST00000522130_5end | |||
|coexpression_cluster_id=C1515 | |||
|description=CAGE_peak_5_at_MSR1_5end | |||
|id=chr8:16425043..16425061,- | |||
|ontology_enrichment_celltype=CL:0002139!1.16e-65!24;CL:0000115!1.18e-56!35;CL:0000071!1.23e-45!18;CL:0002546!1.23e-45!18;CL:0002078!1.19e-43!44;CL:0000213!3.94e-32!57;CL:0000215!3.94e-32!57;CL:1000413!2.20e-29!9;CL:0005020!1.17e-21!6;CL:0002138!1.17e-21!6;CL:0005022!1.17e-21!6;CL:0002544!6.17e-20!6;CL:0000222!4.45e-17!119;CL:0000076!5.73e-12!62;CL:0002144!9.10e-12!3;CL:0002543!2.33e-09!6;CL:0000666!1.33e-08!4;CL:0002188!1.33e-08!4;CL:1000612!3.90e-08!7;CL:1000746!3.90e-08!7;CL:0002545!4.09e-08!2;CL:0000220!4.44e-07!246;CL:0002321!5.79e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.97e-54;24!CL:0002138;4.37e-48;6!CL:0000115;9.60e-44;36!CL:0002078;4.59e-32;45!CL:0002144;4.20e-25;3!CL:0000071;5.24e-21;18!CL:0000213;1.23e-20;58!CL:0000215;1.23e-20;58!CL:0002188;6.82e-15;5!CL:0002573;3.79e-12;2!CL:1000746;8.52e-11;7!CL:1000612;8.52e-11;7!CL:0000222;2.16e-09;1!CL:1000413;1.70e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.81e-54,24;CL:0000115,5.98e-54,36;CL:0005020,4.56e-48,6;CL:0002138,4.56e-48,6;CL:0005022,4.56e-48,6;CL:0002078,1.30e-42,45;CL:0000213,1.94e-32,58;CL:0000215,1.94e-32,58;CL:0002144,4.21e-25,3;CL:0000071,4.05e-21,18;CL:0002546,4.05e-21,18;CL:0000222,4.36e-16,121;CL:0002188,9.98e-15,5;CL:0002573,3.69e-12,2;CL:1000746,1.12e-10,7;CL:1000612,1.12e-10,7;CL:1000413,1.53e-08,9;CL:0002321,3.67e-08,250;CL:0000076,4.10e-07,63;CL:0000066,4.93e-07,253 | |||
|ontology_enrichment_development_v019=CL:0005022;4.37e-48;6!CL:0002546;5.24e-21;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;3.98e-09;1!DOID:3165;3.98e-09;1!DOID:0060121;3.98e-09;1!DOID:2438;3.98e-09;1!DOID:4418;3.98e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,3.00e-09,1;DOID:3165,3.00e-09,1;DOID:0060121,3.00e-09,1;DOID:2438,3.00e-09,1;DOID:4418,3.00e-09,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001473;5.42e-36;8!UBERON:0004536;5.42e-36;8!UBERON:0006558;5.42e-36;8!UBERON:0002465;9.98e-29;10!UBERON:0010523;4.20e-25;3!UBERON:0001915;4.20e-25;3!UBERON:0001982;4.20e-25;3!UBERON:0004638;5.24e-21;18!UBERON:0001986;5.24e-21;18!UBERON:0004852;5.24e-21;18!UBERON:0000487;4.67e-17;22!UBERON:0006914;6.38e-15;25!UBERON:0000055;8.25e-15;65!UBERON:0002405;7.20e-14;27!UBERON:0000074;8.52e-11;7!UBERON:0001229;8.52e-11;7!UBERON:0000490;7.88e-10;33!UBERON:0002049;5.70e-09;75!UBERON:0007798;5.70e-09;75!UBERON:0003915;1.70e-08;9!UBERON:0004700;1.70e-08;9!UBERON:0001917;1.70e-08;9!UBERON:0002193;1.48e-07;42 | |||
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|short_description=p5@MSR1 | |||
}} |
Revision as of 04:18, 14 September 2013
Short description: | p5@MSR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_MSR1_5end |
Coexpression cluster: | C1515_Endothelial_schwannoma_Renal_cerebellum_lung_heart_diaphragm |
Association with transcript: | -44bp_to_ENST00000522130_5end |
EntrezGene: | MSR1 |
HGNC: | 7376 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.81e-54 | 24 |
endothelial cell | 5.98e-54 | 36 |
lymphangioblast | 4.56e-48 | 6 |
endothelial cell of lymphatic vessel | 4.56e-48 | 6 |
vascular lymphangioblast | 4.56e-48 | 6 |
meso-epithelial cell | 1.30e-42 | 45 |
lining cell | 1.94e-32 | 58 |
barrier cell | 1.94e-32 | 58 |
capillary endothelial cell | 4.21e-25 | 3 |
blood vessel endothelial cell | 4.05e-21 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.05e-21 | 18 |
mesodermal cell | 4.36e-16 | 121 |
glomerular endothelial cell | 9.98e-15 | 5 |
Schwann cell | 3.69e-12 | 2 |
glomerular cell | 1.12e-10 | 7 |
kidney corpuscule cell | 1.12e-10 | 7 |
endothelial cell of artery | 1.53e-08 | 9 |
embryonic cell | 3.67e-08 | 250 |
squamous epithelial cell | 4.10e-07 | 63 |
epithelial cell | 4.93e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 3.00e-09 | 1 |
skin benign neoplasm | 3.00e-09 | 1 |
integumentary system benign neoplasm | 3.00e-09 | 1 |
dermis tumor | 3.00e-09 | 1 |
cutaneous fibrous histiocytoma | 3.00e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.