FFCP PHASE1:Mm9::chr6:144996156..144996180,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12035|HGNC=|MCL_coexpression_id=486|UniProt=B2KFA9|association_with_transcript=0bp_to_ENSMUST00000149769_5end|description=CAGE_peak_4_at_Bcat1_5end|id=chr6:144996156..144996180,-|ontology_enrichment_celltype=CL:0002319!1.27e-13!43;CL:0000221!6.57e-13!44;CL:0000133!6.57e-13!44;CL:0000117!2.85e-12!23;CL:0000337!2.85e-12!23;CL:0000055!1.22e-11!50;CL:0000540!1.19e-08!33;CL:0000047!1.19e-08!33;CL:0000031!1.19e-08!33;CL:0000404!1.19e-08!33;CL:0000393!1.38e-07!39;CL:0000211!1.38e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.37e-16,23;CL:0000337,4.37e-16,23;CL:0002319,8.01e-16,43;CL:0000221,3.21e-15,44;CL:0000133,3.21e-15,44;CL:0000540,4.69e-09,33;CL:0000047,4.69e-09,33;CL:0000031,4.69e-09,33;CL:0000404,4.69e-09,33;CL:0000333,6.82e-09,10;CL:0000095,6.82e-09,10;CL:0000243,6.82e-09,10;CL:0000123,6.82e-09,10;CL:0000125,6.82e-09,10;CL:0000030,6.82e-09,10;CL:0000339,6.82e-09,10;CL:0000393,4.30e-08,39;CL:0000211,4.30e-08,39;CL:0002453,1.60e-07,8;CL:0002321,4.78e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.12e-23!75;UBERON:0001016!8.12e-23!75;UBERON:0004121!8.62e-23!102;UBERON:0000924!8.62e-23!102;UBERON:0006601!8.62e-23!102;UBERON:0001017!1.05e-21!73;UBERON:0005743!1.05e-21!73;UBERON:0000033!1.29e-21!63;UBERON:0002346!1.37e-21!71;UBERON:0003075!1.37e-21!71;UBERON:0007284!1.37e-21!71;UBERON:0003056!6.35e-19!49;UBERON:0001049!1.75e-18!52;UBERON:0005068!1.75e-18!52;UBERON:0006241!1.75e-18!52;UBERON:0007135!1.75e-18!52;UBERON:0000955!2.22e-18!50;UBERON:0006238!2.22e-18!50;UBERON:0002616!8.53e-18!49;UBERON:0003080!9.32e-13!40;UBERON:0002780!3.03e-12!39;UBERON:0001890!3.03e-12!39;UBERON:0006240!3.03e-12!39;UBERON:0002020!2.80e-11!34;UBERON:0007811!8.48e-10!86;UBERON:0002791!9.01e-10!29;UBERON:0003528!9.01e-10!29;UBERON:0001893!9.01e-10!29;UBERON:0000153!2.24e-09!94;UBERON:0000970!9.58e-08!9;UBERON:0000019!9.58e-08!9;UBERON:0000047!9.58e-08!9;UBERON:0004088!9.58e-08!9;UBERON:0002104!9.58e-08!9;UBERON:0001456!9.58e-08!9;UBERON:0003072!9.58e-08!9;UBERON:0003071!9.58e-08!9;UBERON:0004128!9.58e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.38e-24,95;UBERON:0000924,2.38e-24,95;UBERON:0006601,2.38e-24,95;UBERON:0002346,7.00e-24,64;UBERON:0003075,7.00e-24,64;UBERON:0007284,7.00e-24,64;UBERON:0001016,2.06e-21,75;UBERON:0001017,5.23e-20,73;UBERON:0010371,5.81e-19,73;UBERON:0000073,1.43e-18,54;UBERON:0003056,1.87e-18,49;UBERON:0001049,2.96e-17,52;UBERON:0005068,2.96e-17,52;UBERON:0006241,2.96e-17,52;UBERON:0007135,2.96e-17,52;UBERON:0000955,1.05e-15,47;UBERON:0006238,1.05e-15,47;UBERON:0002616,5.73e-15,46;UBERON:0010314,2.75e-13,92;UBERON:0002020,5.71e-11,34;UBERON:0003080,1.05e-10,40;UBERON:0000970,1.20e-10,9;UBERON:0000019,1.20e-10,9;UBERON:0000047,1.20e-10,9;UBERON:0010312,1.20e-10,9;UBERON:0004088,1.20e-10,9;UBERON:0002104,1.20e-10,9;UBERON:0001456,1.20e-10,9;UBERON:0003072,1.20e-10,9;UBERON:0004128,1.20e-10,9;UBERON:0003071,1.20e-10,9;UBERON:0002780,4.50e-10,39;UBERON:0001890,4.50e-10,39;UBERON:0006240,4.50e-10,39;UBERON:0003528,1.15e-09,29;UBERON:0002791,1.15e-09,29;UBERON:0001893,1.15e-09,29;UBERON:0001444,3.61e-08,11;UBERON:0003076,5.64e-08,12;UBERON:0003057,5.64e-08,12;UBERON:0000474,2.12e-07,9;UBERON:0000020,3.00e-07,12;UBERON:0001032,3.00e-07,12;UBERON:0004456,3.00e-07,12;UBERON:0001954,5.71e-07,7;UBERON:0003022,5.71e-07,7;UBERON:0002421,5.71e-07,7;UBERON:0000349,5.71e-07,7;UBERON:0002600,5.71e-07,7;UBERON:0002420,6.09e-07,8;UBERON:0007245,6.09e-07,8;UBERON:0010009,6.09e-07,8;UBERON:0010011,6.09e-07,8;UBERON:0000454,6.09e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.3958008802433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34717403304412,5.23260375313072,14.9386604259441,42.5801478972681,4.61955191363696,2.87505128729943,0,0,0,1.28629718017973,1.71920063963254,0.515672092277442,8.49729135610311,7.93486468908049,4.43681982454325,2.03306719241479,0.889294796111139,0.449949858640699,0,0,2.09720077362883,4.2264013585371,5.91030790158323,6.88530285491622,3.99617426567626,1.99955689082663,1.98781686856452,4.5321595709533,5.84657373211242,1.83843757322004,7.70811166995721,1.78762273319263,7.52672012955593,7.12185953743047,7.41049913179518,3.12548022334056,4.18774498502071,2.8138130501584,3.81995619442025,0.883885756421003,1.70846016958924,2.23679334990361,2.27178579999552,6.04572480854284,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,3.53970027129086,0,0.29688427812965,0.520455980298408,0,0,0.452167921657868,0.23517741427141,0,0.741584903203122,0.144599356919912,0,0.808834249737046,0,0,0,3.51336956413857,7.54008144528438,0,0,0,0,4.19413790333504,2.28750301409313,2.01046963380583,0.869121600961382,2.81287003063364,2.70124457927428,6.48965052271031,0.712875546952214,0.497627882440372,0.505445516867349,5.47148825304832,8.45782879257574,8.96618207290544,15.48534316326,15.6733010549144,24.9693951885373,39.7152532883034,48.3500898728201,12.4177617954728,0.431135985865684,1.32374256117473,0.8797556208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| ||
|EntrezGene=12035 | |||
|HGNC= | |||
|MCL_coexpression_id=486 | |||
|UniProt=B2KFA9 | |||
|association_with_transcript=0bp_to_ENSMUST00000149769_5end | |||
|description=CAGE_peak_4_at_Bcat1_5end | |||
|id=chr6:144996156..144996180,- | |||
|ontology_enrichment_celltype=CL:0002319!1.27e-13!43;CL:0000221!6.57e-13!44;CL:0000133!6.57e-13!44;CL:0000117!2.85e-12!23;CL:0000337!2.85e-12!23;CL:0000055!1.22e-11!50;CL:0000540!1.19e-08!33;CL:0000047!1.19e-08!33;CL:0000031!1.19e-08!33;CL:0000404!1.19e-08!33;CL:0000393!1.38e-07!39;CL:0000211!1.38e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.37e-16,23;CL:0000337,4.37e-16,23;CL:0002319,8.01e-16,43;CL:0000221,3.21e-15,44;CL:0000133,3.21e-15,44;CL:0000540,4.69e-09,33;CL:0000047,4.69e-09,33;CL:0000031,4.69e-09,33;CL:0000404,4.69e-09,33;CL:0000333,6.82e-09,10;CL:0000095,6.82e-09,10;CL:0000243,6.82e-09,10;CL:0000123,6.82e-09,10;CL:0000125,6.82e-09,10;CL:0000030,6.82e-09,10;CL:0000339,6.82e-09,10;CL:0000393,4.30e-08,39;CL:0000211,4.30e-08,39;CL:0002453,1.60e-07,8;CL:0002321,4.78e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.12e-23!75;UBERON:0001016!8.12e-23!75;UBERON:0004121!8.62e-23!102;UBERON:0000924!8.62e-23!102;UBERON:0006601!8.62e-23!102;UBERON:0001017!1.05e-21!73;UBERON:0005743!1.05e-21!73;UBERON:0000033!1.29e-21!63;UBERON:0002346!1.37e-21!71;UBERON:0003075!1.37e-21!71;UBERON:0007284!1.37e-21!71;UBERON:0003056!6.35e-19!49;UBERON:0001049!1.75e-18!52;UBERON:0005068!1.75e-18!52;UBERON:0006241!1.75e-18!52;UBERON:0007135!1.75e-18!52;UBERON:0000955!2.22e-18!50;UBERON:0006238!2.22e-18!50;UBERON:0002616!8.53e-18!49;UBERON:0003080!9.32e-13!40;UBERON:0002780!3.03e-12!39;UBERON:0001890!3.03e-12!39;UBERON:0006240!3.03e-12!39;UBERON:0002020!2.80e-11!34;UBERON:0007811!8.48e-10!86;UBERON:0002791!9.01e-10!29;UBERON:0003528!9.01e-10!29;UBERON:0001893!9.01e-10!29;UBERON:0000153!2.24e-09!94;UBERON:0000970!9.58e-08!9;UBERON:0000019!9.58e-08!9;UBERON:0000047!9.58e-08!9;UBERON:0004088!9.58e-08!9;UBERON:0002104!9.58e-08!9;UBERON:0001456!9.58e-08!9;UBERON:0003072!9.58e-08!9;UBERON:0003071!9.58e-08!9;UBERON:0004128!9.58e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.38e-24,95;UBERON:0000924,2.38e-24,95;UBERON:0006601,2.38e-24,95;UBERON:0002346,7.00e-24,64;UBERON:0003075,7.00e-24,64;UBERON:0007284,7.00e-24,64;UBERON:0001016,2.06e-21,75;UBERON:0001017,5.23e-20,73;UBERON:0010371,5.81e-19,73;UBERON:0000073,1.43e-18,54;UBERON:0003056,1.87e-18,49;UBERON:0001049,2.96e-17,52;UBERON:0005068,2.96e-17,52;UBERON:0006241,2.96e-17,52;UBERON:0007135,2.96e-17,52;UBERON:0000955,1.05e-15,47;UBERON:0006238,1.05e-15,47;UBERON:0002616,5.73e-15,46;UBERON:0010314,2.75e-13,92;UBERON:0002020,5.71e-11,34;UBERON:0003080,1.05e-10,40;UBERON:0000970,1.20e-10,9;UBERON:0000019,1.20e-10,9;UBERON:0000047,1.20e-10,9;UBERON:0010312,1.20e-10,9;UBERON:0004088,1.20e-10,9;UBERON:0002104,1.20e-10,9;UBERON:0001456,1.20e-10,9;UBERON:0003072,1.20e-10,9;UBERON:0004128,1.20e-10,9;UBERON:0003071,1.20e-10,9;UBERON:0002780,4.50e-10,39;UBERON:0001890,4.50e-10,39;UBERON:0006240,4.50e-10,39;UBERON:0003528,1.15e-09,29;UBERON:0002791,1.15e-09,29;UBERON:0001893,1.15e-09,29;UBERON:0001444,3.61e-08,11;UBERON:0003076,5.64e-08,12;UBERON:0003057,5.64e-08,12;UBERON:0000474,2.12e-07,9;UBERON:0000020,3.00e-07,12;UBERON:0001032,3.00e-07,12;UBERON:0004456,3.00e-07,12;UBERON:0001954,5.71e-07,7;UBERON:0003022,5.71e-07,7;UBERON:0002421,5.71e-07,7;UBERON:0000349,5.71e-07,7;UBERON:0002600,5.71e-07,7;UBERON:0002420,6.09e-07,8;UBERON:0007245,6.09e-07,8;UBERON:0010009,6.09e-07,8;UBERON:0010011,6.09e-07,8;UBERON:0000454,6.09e-07,8 | |||
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|short_description=p4@Bcat1 | |||
}} |
Revision as of 09:20, 14 September 2013
Short description: | p4@Bcat1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Bcat1_5end |
Coexpression cluster: | MCL_coexpression_mm9:486 |
Association with transcript: | 0bp_to_ENSMUST00000149769_5end |
EntrezGene: | Bcat1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.37e-16 | 23 |
neuroblast (sensu Vertebrata) | 4.37e-16 | 23 |
neural cell | 8.01e-16 | 43 |
ectodermal cell | 3.21e-15 | 44 |
neurectodermal cell | 3.21e-15 | 44 |
neuron | 4.69e-09 | 33 |
neuronal stem cell | 4.69e-09 | 33 |
neuroblast | 4.69e-09 | 33 |
electrically signaling cell | 4.69e-09 | 33 |
migratory neural crest cell | 6.82e-09 | 10 |
neuron associated cell | 6.82e-09 | 10 |
glial cell (sensu Vertebrata) | 6.82e-09 | 10 |
neuron associated cell (sensu Vertebrata) | 6.82e-09 | 10 |
glial cell | 6.82e-09 | 10 |
glioblast | 6.82e-09 | 10 |
glioblast (sensu Vertebrata) | 6.82e-09 | 10 |
electrically responsive cell | 4.30e-08 | 39 |
electrically active cell | 4.30e-08 | 39 |
oligodendrocyte precursor cell | 1.60e-07 | 8 |
embryonic cell | 4.78e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.