FFCP PHASE1:Mm9::chr6:60779780..60779817,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20617|HGNC=|UniProt=O55042|association_with_transcript=31bp_to_ENSMUST00000163779,NM_009221,uc009cdo.1_5end|description=CAGE_peak_2_at_Snca_5end|id=chr6:60779780..60779817,-|ontology_enrichment_celltype=CL:0000540!2.47e-09!33;CL:0000047!2.47e-09!33;CL:0000031!2.47e-09!33;CL:0000404!2.47e-09!33;CL:0000117!6.54e-09!23;CL:0000337!6.54e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.34e-10,23;CL:0000337,1.34e-10,23;CL:0000540,3.23e-10,33;CL:0000047,3.23e-10,33;CL:0000031,3.23e-10,33;CL:0000404,3.23e-10,33;CL:0000393,4.15e-07,39;CL:0000211,4.15e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.03e-17!73;UBERON:0005743!2.03e-17!73;UBERON:0000073!1.98e-16!75;UBERON:0001016!1.98e-16!75;UBERON:0001049!1.66e-15!52;UBERON:0005068!1.66e-15!52;UBERON:0006241!1.66e-15!52;UBERON:0007135!1.66e-15!52;UBERON:0002346!2.64e-15!71;UBERON:0003075!2.64e-15!71;UBERON:0007284!2.64e-15!71;UBERON:0000033!5.27e-15!63;UBERON:0002020!1.65e-14!34;UBERON:0000955!2.46e-14!50;UBERON:0006238!2.46e-14!50;UBERON:0004121!3.90e-14!102;UBERON:0000924!3.90e-14!102;UBERON:0006601!3.90e-14!102;UBERON:0002616!8.79e-14!49;UBERON:0000025!1.12e-13!114;UBERON:0003056!7.93e-13!49;UBERON:0004111!1.91e-12!122;UBERON:0003080!8.16e-12!40;UBERON:0002791!1.08e-11!29;UBERON:0003528!1.08e-11!29;UBERON:0001893!1.08e-11!29;UBERON:0002780!1.58e-11!39;UBERON:0001890!1.58e-11!39;UBERON:0006240!1.58e-11!39;UBERON:0000956!2.25e-08!21;UBERON:0001869!2.25e-08!21;UBERON:0000203!2.25e-08!21;UBERON:0002619!1.75e-07!17;UBERON:0002021!2.43e-07!10;UBERON:0000411!2.43e-07!10;UBERON:0001950!2.43e-07!10;UBERON:0000468!2.52e-07!333;UBERON:0000477!5.05e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.58e-17,73;UBERON:0002020,5.10e-17,34;UBERON:0000073,1.01e-16,54;UBERON:0001016,1.82e-16,75;UBERON:0002346,2.62e-16,64;UBERON:0003075,2.62e-16,64;UBERON:0007284,2.62e-16,64;UBERON:0001049,1.75e-15,52;UBERON:0005068,1.75e-15,52;UBERON:0006241,1.75e-15,52;UBERON:0007135,1.75e-15,52;UBERON:0004121,6.04e-14,95;UBERON:0000924,6.04e-14,95;UBERON:0006601,6.04e-14,95;UBERON:0003528,1.42e-13,29;UBERON:0002791,1.42e-13,29;UBERON:0001893,1.42e-13,29;UBERON:0010371,2.31e-13,73;UBERON:0010314,4.66e-13,92;UBERON:0003056,6.57e-13,49;UBERON:0000025,7.34e-13,114;UBERON:0000955,8.05e-13,47;UBERON:0006238,8.05e-13,47;UBERON:0002616,3.34e-12,46;UBERON:0003080,7.79e-12,40;UBERON:0004111,1.55e-11,122;UBERON:0002780,1.72e-11,39;UBERON:0001890,1.72e-11,39;UBERON:0006240,1.72e-11,39;UBERON:0000956,1.61e-09,21;UBERON:0001869,1.61e-09,21;UBERON:0000203,1.61e-09,21;UBERON:0002021,1.13e-08,10;UBERON:0000411,1.13e-08,10;UBERON:0001950,1.13e-08,10;UBERON:0002619,2.05e-08,17|phase1_expression=1.44133962394315,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0.171200729931206,0.262261207256992,4.99664642723494,14.5782192520675,6.99561878128147,0.788655413395594,1.64537320326887,3.39511721438424,2.8064285749853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0470474879476,0,0.683045484958446,0,0,0.101376931219515,0,0.782391344348039,0.436050312760893,0.219686182734472,0.388859798148567,0.419959264876088,1.43752564364972,0,0,0,0,0,0.515672092277442,2.83243045203437,5.81890077199236,1.90149421051854,0.338844532069132,0,0.449949858640699,0,0,0,0,1.8664130215526,1.89008313664367,1.47227472945967,6.28432165688368,9.27647871996777,1.71487118900936,1.43768206527355,1.83843757322004,1.10115880999389,11.2364857514965,10.2916377281683,1.31886287730194,2.92760459527711,3.64639359389732,5.862842979029,10.6924895906019,19.7109739632085,10.9012576625257,13.810053037513,7.82877672466262,0.151452386666368,0.0755715601067855,0,0,0,0,0,0,1.82577746171277,0,0,0,3.52108549441701,0,0,0,0,0,0,0.79928715803342,0,0.593768556259299,0.173485326766136,0.608930956624282,0.922461989024234,0.60289056221049,0.470354828542819,0.753999547978053,0.247194967734374,1.59059292611903,7.07688441559899,0.808834249737046,8.39197770149496,6.78825354389311,0,1.17112318804619,6.0739544975902,0,0,0,0.127070227073065,2.39665023047716,8.6925114535539,4.52355667606312,9.90798625095976,9.46147192122223,4.36354893575076,8.4365456795234,0.101839363850316,5.349499736234,0,0.420883711772948,1.30120442962704,2.06911893990126,2.52086981727489,3.61691562805716,2.04109497453984,1.40925092313335,1.59292931751539,1.03481348295606,0,0,0.351902248327898,0.219195732427575,0.834141747676794,0,0.205782136407943,1.39323986772945,0,0,0,0.414251545071004,0.938104239924385,1.80062061461015,1.65721314909647,1.37734962223183,1.54267112887378,0.930135779001631,1.07309360559848,0.817357396570186,0,2.79084688934462,4.9451973822972,6.87139940899062,15.8076083009556,10.8707199195901,30.2817525932343,33.2381897985089,0,0,0.213288250535234,0.232236671860439,0.257734922644187,0,0,0.570676878337677,0,0.164698954724011,1.00534083520108,1.1937388322469,1.36474860983384,0,0.216138049874694,0,0,0.456994050438915,1.1270773567308,0.407302655690628,0.581857461502877,0.280543279561274,0.632365371242573,0.738050739898011,1.09899109488962,1.23397163921801,0,0.83422552858047,2.55526693647164,2.9232074610031,4.66578279193557,3.61765739628625,5.34714288740982,3.45235364940973,1.94562272130042,2.19649130550465,4.31304619582064,0.372140947668503,1.5601883655728,0.757736633841335,0.717589654087649,0,1.66277871149944,0.757965647081939,0.977789858652155,0.509235257325564,0.234690248288502,1.34005005953453,0.476087281772027,0.780534591431195,4.57141917907954,3.76489972402917,1.75400245523236,9.01248230936559,14.6782234586011,11.2826265693579,0,0,0.491764273019036,0,4.81651769963376,5.15731421005694,0,1.00988370881749,1.57754109708128,1.17131623288992,0.861693590931196,2.38968797952552,1.11399337041197,0.566153061577665,1.61924280669958,1.75353514746787,2.37172666767914,9.63963949265421,0.283880170416537,0.178065603667255,0,0.329940245945071,0,0,0.604647113929502,0.188605079755898,0.590603785761546,0.614870295887855,0.516856586336442,0,0.356497378384721,0.948110273807448,0,2.06271086496374,1.70219802876894,0.540183282093931,0.129358683782755,0.857348140126369,0.709360934569094,1.42695054081656,0.987294123612726,1.8267896946876,0,0.21183207086382,0.220528398054962,0.32977250588296,0.161464426695906,0.422190474497091,0.119372344003136,0.656563598980245,0.291480836629851,1.48340241608408,8.71441492069049,0.82554747185289,0.925972636848558,17.5182665014363,12.1657862671712,25.394377225924,0.169978429993855,0,0.276399947608848,0,0.158167996790568,0,0.324016022465404,1.46361807210128,0.87345025498471,0.539457385539283,0.41326727862668,1.30877970992015,0.129614973291793,0.621339313086926,0,0.598066184175915,0.496375471371293,0.972255941720238,0.129159823477731,0,0.234714477291508,0.39061315453185,0,0,0,0,0,0.102710957164827,0.25984164595559,0,0,0.120195449519969,0.147689527174577,0.504832249740738,0.15241361331,0.100826185136841,0.292373642219257,0.384847366561318,0.350630706544707,0,0,0,0,0.19318959403219,0.563047426353546,0,0.214368379079066,0,17.5073071211291,10.5874804396651,14.3223878359849,12.0297227640581,10.9613203163303,12.0863023582352,7.42524750254986,9.00642406448441,8.15656336171568,10.3552062350364,0.518936737920883,0.798049746802062,1.36586884603307,2.43106717068294,1.67690530102386,2.38996560985018,2.22246727801615,1.23621034343337,2.56735367673452,1.51618327058278,2.78827229879264,1.32038438970253,2.24739617927718,2.68905640100451,2.46972516509137,2.85776214769844,1.73826488917283,1.73618298417335,2.47251540481984,2.20798380201596,2.05721551431249,1.95223386775271,2.86123427936785,2.32554266611726,2.1645157495526,2.11536519729191,2.0122077016005,3.94604567156764,3.25929873230068,0.561142271657738,1.30498519936592,1.28055827088233,2.86461730218783,1.85924209423159,1.15743966588685,0.499621155875892,1.40358965067245,0.859484216193193,0.956441660344217,0.661774257358546,2.31867835620421|short_description=p2@Snca}} | ||
|EntrezGene=20617 | |||
|HGNC= | |||
|UniProt=O55042 | |||
|association_with_transcript=31bp_to_ENSMUST00000163779,NM_009221,uc009cdo.1_5end | |||
|description=CAGE_peak_2_at_Snca_5end | |||
|id=chr6:60779780..60779817,- | |||
|ontology_enrichment_celltype=CL:0000540!2.47e-09!33;CL:0000047!2.47e-09!33;CL:0000031!2.47e-09!33;CL:0000404!2.47e-09!33;CL:0000117!6.54e-09!23;CL:0000337!6.54e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.34e-10,23;CL:0000337,1.34e-10,23;CL:0000540,3.23e-10,33;CL:0000047,3.23e-10,33;CL:0000031,3.23e-10,33;CL:0000404,3.23e-10,33;CL:0000393,4.15e-07,39;CL:0000211,4.15e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.03e-17!73;UBERON:0005743!2.03e-17!73;UBERON:0000073!1.98e-16!75;UBERON:0001016!1.98e-16!75;UBERON:0001049!1.66e-15!52;UBERON:0005068!1.66e-15!52;UBERON:0006241!1.66e-15!52;UBERON:0007135!1.66e-15!52;UBERON:0002346!2.64e-15!71;UBERON:0003075!2.64e-15!71;UBERON:0007284!2.64e-15!71;UBERON:0000033!5.27e-15!63;UBERON:0002020!1.65e-14!34;UBERON:0000955!2.46e-14!50;UBERON:0006238!2.46e-14!50;UBERON:0004121!3.90e-14!102;UBERON:0000924!3.90e-14!102;UBERON:0006601!3.90e-14!102;UBERON:0002616!8.79e-14!49;UBERON:0000025!1.12e-13!114;UBERON:0003056!7.93e-13!49;UBERON:0004111!1.91e-12!122;UBERON:0003080!8.16e-12!40;UBERON:0002791!1.08e-11!29;UBERON:0003528!1.08e-11!29;UBERON:0001893!1.08e-11!29;UBERON:0002780!1.58e-11!39;UBERON:0001890!1.58e-11!39;UBERON:0006240!1.58e-11!39;UBERON:0000956!2.25e-08!21;UBERON:0001869!2.25e-08!21;UBERON:0000203!2.25e-08!21;UBERON:0002619!1.75e-07!17;UBERON:0002021!2.43e-07!10;UBERON:0000411!2.43e-07!10;UBERON:0001950!2.43e-07!10;UBERON:0000468!2.52e-07!333;UBERON:0000477!5.05e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.58e-17,73;UBERON:0002020,5.10e-17,34;UBERON:0000073,1.01e-16,54;UBERON:0001016,1.82e-16,75;UBERON:0002346,2.62e-16,64;UBERON:0003075,2.62e-16,64;UBERON:0007284,2.62e-16,64;UBERON:0001049,1.75e-15,52;UBERON:0005068,1.75e-15,52;UBERON:0006241,1.75e-15,52;UBERON:0007135,1.75e-15,52;UBERON:0004121,6.04e-14,95;UBERON:0000924,6.04e-14,95;UBERON:0006601,6.04e-14,95;UBERON:0003528,1.42e-13,29;UBERON:0002791,1.42e-13,29;UBERON:0001893,1.42e-13,29;UBERON:0010371,2.31e-13,73;UBERON:0010314,4.66e-13,92;UBERON:0003056,6.57e-13,49;UBERON:0000025,7.34e-13,114;UBERON:0000955,8.05e-13,47;UBERON:0006238,8.05e-13,47;UBERON:0002616,3.34e-12,46;UBERON:0003080,7.79e-12,40;UBERON:0004111,1.55e-11,122;UBERON:0002780,1.72e-11,39;UBERON:0001890,1.72e-11,39;UBERON:0006240,1.72e-11,39;UBERON:0000956,1.61e-09,21;UBERON:0001869,1.61e-09,21;UBERON:0000203,1.61e-09,21;UBERON:0002021,1.13e-08,10;UBERON:0000411,1.13e-08,10;UBERON:0001950,1.13e-08,10;UBERON:0002619,2.05e-08,17 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0.171200729931206,0.262261207256992,4.99664642723494,14.5782192520675,6.99561878128147,0.788655413395594,1.64537320326887,3.39511721438424,2.8064285749853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0470474879476,0,0.683045484958446,0,0,0.101376931219515,0,0.782391344348039,0.436050312760893,0.219686182734472,0.388859798148567,0.419959264876088,1.43752564364972,0,0,0,0,0,0.515672092277442,2.83243045203437,5.81890077199236,1.90149421051854,0.338844532069132,0,0.449949858640699,0,0,0,0,1.8664130215526,1.89008313664367,1.47227472945967,6.28432165688368,9.27647871996777,1.71487118900936,1.43768206527355,1.83843757322004,1.10115880999389,11.2364857514965,10.2916377281683,1.31886287730194,2.92760459527711,3.64639359389732,5.862842979029,10.6924895906019,19.7109739632085,10.9012576625257,13.810053037513,7.82877672466262,0.151452386666368,0.0755715601067855,0,0,0,0,0,0,1.82577746171277,0,0,0,3.52108549441701,0,0,0,0,0,0,0.79928715803342,0,0.593768556259299,0.173485326766136,0.608930956624282,0.922461989024234,0.60289056221049,0.470354828542819,0.753999547978053,0.247194967734374,1.59059292611903,7.07688441559899,0.808834249737046,8.39197770149496,6.78825354389311,0,1.17112318804619,6.0739544975902,0,0,0,0.127070227073065,2.39665023047716,8.6925114535539,4.52355667606312,9.90798625095976,9.46147192122223,4.36354893575076,8.4365456795234,0.101839363850316,5.349499736234,0,0.420883711772948,1.30120442962704,2.06911893990126,2.52086981727489,3.61691562805716,2.04109497453984,1.40925092313335,1.59292931751539,1.03481348295606,0,0,0.351902248327898,0.219195732427575,0.834141747676794,0,0.205782136407943,1.39323986772945,0,0,0,0.414251545071004,0.938104239924385,1.80062061461015,1.65721314909647,1.37734962223183,1.54267112887378,0.930135779001631,1.07309360559848,0.817357396570186,0,2.79084688934462,4.9451973822972,6.87139940899062,15.8076083009556,10.8707199195901,30.2817525932343,33.2381897985089,0,0,0.213288250535234,0.232236671860439,0.257734922644187,0,0,0.570676878337677,0,0.164698954724011,1.00534083520108,1.1937388322469,1.36474860983384,0,0.216138049874694,0,0,0.456994050438915,1.1270773567308,0.407302655690628,0.581857461502877,0.280543279561274,0.632365371242573,0.738050739898011,1.09899109488962,1.23397163921801,0,0.83422552858047,2.55526693647164,2.9232074610031,4.66578279193557,3.61765739628625,5.34714288740982,3.45235364940973,1.94562272130042,2.19649130550465,4.31304619582064,0.372140947668503,1.5601883655728,0.757736633841335,0.717589654087649,0,1.66277871149944,0.757965647081939,0.977789858652155,0.509235257325564,0.234690248288502,1.34005005953453,0.476087281772027,0.780534591431195,4.57141917907954,3.76489972402917,1.75400245523236,9.01248230936559,14.6782234586011,11.2826265693579,0,0,0.491764273019036,0,4.81651769963376,5.15731421005694,0,1.00988370881749,1.57754109708128,1.17131623288992,0.861693590931196,2.38968797952552,1.11399337041197,0.566153061577665,1.61924280669958,1.75353514746787,2.37172666767914,9.63963949265421,0.283880170416537,0.178065603667255,0,0.329940245945071,0,0,0.604647113929502,0.188605079755898,0.590603785761546,0.614870295887855,0.516856586336442,0,0.356497378384721,0.948110273807448,0,2.06271086496374,1.70219802876894,0.540183282093931,0.129358683782755,0.857348140126369,0.709360934569094,1.42695054081656,0.987294123612726,1.8267896946876,0,0.21183207086382,0.220528398054962,0.32977250588296,0.161464426695906,0.422190474497091,0.119372344003136,0.656563598980245,0.291480836629851,1.48340241608408,8.71441492069049,0.82554747185289,0.925972636848558,17.5182665014363,12.1657862671712,25.394377225924,0.169978429993855,0,0.276399947608848,0,0.158167996790568,0,0.324016022465404,1.46361807210128,0.87345025498471,0.539457385539283,0.41326727862668,1.30877970992015,0.129614973291793,0.621339313086926,0,0.598066184175915,0.496375471371293,0.972255941720238,0.129159823477731,0,0.234714477291508,0.39061315453185,0,0,0,0,0,0.102710957164827,0.25984164595559,0,0,0.120195449519969,0.147689527174577,0.504832249740738,0.15241361331,0.100826185136841,0.292373642219257,0.384847366561318,0.350630706544707,0,0,0,0,0.19318959403219,0.563047426353546,0,0.214368379079066,0,17.5073071211291,10.5874804396651,14.3223878359849,12.0297227640581,10.9613203163303,12.0863023582352,7.42524750254986,9.00642406448441,8.15656336171568,10.3552062350364,0.518936737920883,0.798049746802062,1.36586884603307,2.43106717068294,1.67690530102386,2.38996560985018,2.22246727801615,1.23621034343337,2.56735367673452,1.51618327058278,2.78827229879264,1.32038438970253,2.24739617927718,2.68905640100451,2.46972516509137,2.85776214769844,1.73826488917283,1.73618298417335,2.47251540481984,2.20798380201596,2.05721551431249,1.95223386775271,2.86123427936785,2.32554266611726,2.1645157495526,2.11536519729191,2.0122077016005,3.94604567156764,3.25929873230068,0.561142271657738,1.30498519936592,1.28055827088233,2.86461730218783,1.85924209423159,1.15743966588685,0.499621155875892,1.40358965067245,0.859484216193193,0.956441660344217,0.661774257358546,2.31867835620421 | |||
|short_description=p2@Snca | |||
}} |
Revision as of 10:25, 14 September 2013
Short description: | p2@Snca |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Snca_5end |
Coexpression cluster: | NA |
Association with transcript: | 31bp_to_ENSMUST00000163779, NM_009221, uc009cdo.1_5end |
EntrezGene: | Snca |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.34e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.34e-10 | 23 |
neuron | 3.23e-10 | 33 |
neuronal stem cell | 3.23e-10 | 33 |
neuroblast | 3.23e-10 | 33 |
electrically signaling cell | 3.23e-10 | 33 |
electrically responsive cell | 4.15e-07 | 39 |
electrically active cell | 4.15e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.