FFCP PHASE1:Mm9::chr8:127354916..127354928,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=87|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr8:127354916..127354928,+|id=chr8:127354916..127354928,+|ontology_enrichment_celltype=CL:0000117!2.82e-14!23;CL:0000337!2.82e-14!23;CL:0000540!1.62e-09!33;CL:0000047!1.62e-09!33;CL:0000031!1.62e-09!33;CL:0000404!1.62e-09!33;CL:0000393!2.63e-07!39;CL:0000211!2.63e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.24e-27,23;CL:0000337,2.24e-27,23;CL:0000540,6.16e-19,33;CL:0000047,6.16e-19,33;CL:0000031,6.16e-19,33;CL:0000404,6.16e-19,33;CL:0002611,1.72e-16,2;CL:0000393,6.11e-16,39;CL:0000211,6.11e-16,39;CL:0002319,2.10e-14,43;CL:0000221,4.60e-14,44;CL:0000133,4.60e-14,44;CL:0002612,6.55e-12,3;CL:0000120,3.20e-11,3;CL:0002321,1.35e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.74e-10!34;UBERON:0002240!4.18e-09!6;UBERON:0005174!4.18e-09!6;UBERON:0001137!4.18e-09!6;UBERON:0002346!8.19e-09!71;UBERON:0003075!8.19e-09!71;UBERON:0007284!8.19e-09!71;UBERON:0001049!2.25e-08!52;UBERON:0005068!2.25e-08!52;UBERON:0006241!2.25e-08!52;UBERON:0007135!2.25e-08!52;UBERON:0001948!2.48e-08!5;UBERON:0002315!2.48e-08!5;UBERON:0001017!8.30e-08!73;UBERON:0005743!8.30e-08!73;UBERON:0004121!1.84e-07!102;UBERON:0000924!1.84e-07!102;UBERON:0006601!1.84e-07!102;UBERON:0000073!2.10e-07!75;UBERON:0001016!2.10e-07!75;UBERON:0003076!4.89e-07!12;UBERON:0003057!4.89e-07!12;UBERON:0000033!8.96e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0001948,7.99e-26,5;UBERON:0002315,7.99e-26,5;UBERON:0002240,1.34e-21,6;UBERON:0005174,1.34e-21,6;UBERON:0001137,1.34e-21,6;UBERON:0002020,1.22e-18,34;UBERON:0002256,1.72e-16,2;UBERON:0001017,1.39e-12,73;UBERON:0001016,3.15e-12,75;UBERON:0001049,5.51e-12,52;UBERON:0005068,5.51e-12,52;UBERON:0006241,5.51e-12,52;UBERON:0007135,5.51e-12,52;UBERON:0002257,6.55e-12,3;UBERON:0000073,1.62e-11,54;UBERON:0003076,5.49e-11,12;UBERON:0003057,5.49e-11,12;UBERON:0002346,1.30e-09,64;UBERON:0003075,1.30e-09,64;UBERON:0007284,1.30e-09,64;UBERON:0004121,1.73e-09,95;UBERON:0000924,1.73e-09,95;UBERON:0006601,1.73e-09,95;UBERON:0010371,2.44e-08,73;UBERON:0000369,1.45e-07,5;UBERON:0002435,1.45e-07,5;UBERON:0000204,1.45e-07,5;UBERON:0010082,1.45e-07,5;UBERON:0003528,4.52e-07,29;UBERON:0002791,4.52e-07,29;UBERON:0001893,4.52e-07,29|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0,2.17748185847803,1.89008313664367,0.210324961351382,1.14260393761521,1.32521124570968,0.61245399607477,0.575072826109418,0,0,0,0,0.791317726381163,0.823388792421687,3.12548022334056,0,0,0,4.71405736757868,2.13557521198654,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0,0,2.63874139437015,0,0,0,0,0,0,0,0,0,0,0.180062129805349,0,0.544291993210623,0.512454881139399,0.374806898238915,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0.164167464079095,0,0,0,0,0,2.36680608472354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0.167506257441816,0,0.390267295715598,0.315270288212382,0.221464689648775,0.318909537314974,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0.171853182343688,0,0,0,0.45032120322422,0,0,0.31136204275253,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0.367687016900028,0,0,0.320919209591815,0,0,0.377252682772152,0.37456602987953,0,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.282328141245992,0.0846146078916765,0.365855945745545,0,0,0,0,0,0.818462086339379,0,0,0.999242311751784,0,0.644613162144895,0,0,0|short_description=p@chr8:127354916..127354928,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr8:127354916..127354928,+ | |||
|id=chr8:127354916..127354928,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.82e-14!23;CL:0000337!2.82e-14!23;CL:0000540!1.62e-09!33;CL:0000047!1.62e-09!33;CL:0000031!1.62e-09!33;CL:0000404!1.62e-09!33;CL:0000393!2.63e-07!39;CL:0000211!2.63e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.24e-27,23;CL:0000337,2.24e-27,23;CL:0000540,6.16e-19,33;CL:0000047,6.16e-19,33;CL:0000031,6.16e-19,33;CL:0000404,6.16e-19,33;CL:0002611,1.72e-16,2;CL:0000393,6.11e-16,39;CL:0000211,6.11e-16,39;CL:0002319,2.10e-14,43;CL:0000221,4.60e-14,44;CL:0000133,4.60e-14,44;CL:0002612,6.55e-12,3;CL:0000120,3.20e-11,3;CL:0002321,1.35e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.74e-10!34;UBERON:0002240!4.18e-09!6;UBERON:0005174!4.18e-09!6;UBERON:0001137!4.18e-09!6;UBERON:0002346!8.19e-09!71;UBERON:0003075!8.19e-09!71;UBERON:0007284!8.19e-09!71;UBERON:0001049!2.25e-08!52;UBERON:0005068!2.25e-08!52;UBERON:0006241!2.25e-08!52;UBERON:0007135!2.25e-08!52;UBERON:0001948!2.48e-08!5;UBERON:0002315!2.48e-08!5;UBERON:0001017!8.30e-08!73;UBERON:0005743!8.30e-08!73;UBERON:0004121!1.84e-07!102;UBERON:0000924!1.84e-07!102;UBERON:0006601!1.84e-07!102;UBERON:0000073!2.10e-07!75;UBERON:0001016!2.10e-07!75;UBERON:0003076!4.89e-07!12;UBERON:0003057!4.89e-07!12;UBERON:0000033!8.96e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,7.99e-26,5;UBERON:0002315,7.99e-26,5;UBERON:0002240,1.34e-21,6;UBERON:0005174,1.34e-21,6;UBERON:0001137,1.34e-21,6;UBERON:0002020,1.22e-18,34;UBERON:0002256,1.72e-16,2;UBERON:0001017,1.39e-12,73;UBERON:0001016,3.15e-12,75;UBERON:0001049,5.51e-12,52;UBERON:0005068,5.51e-12,52;UBERON:0006241,5.51e-12,52;UBERON:0007135,5.51e-12,52;UBERON:0002257,6.55e-12,3;UBERON:0000073,1.62e-11,54;UBERON:0003076,5.49e-11,12;UBERON:0003057,5.49e-11,12;UBERON:0002346,1.30e-09,64;UBERON:0003075,1.30e-09,64;UBERON:0007284,1.30e-09,64;UBERON:0004121,1.73e-09,95;UBERON:0000924,1.73e-09,95;UBERON:0006601,1.73e-09,95;UBERON:0010371,2.44e-08,73;UBERON:0000369,1.45e-07,5;UBERON:0002435,1.45e-07,5;UBERON:0000204,1.45e-07,5;UBERON:0010082,1.45e-07,5;UBERON:0003528,4.52e-07,29;UBERON:0002791,4.52e-07,29;UBERON:0001893,4.52e-07,29 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,1.05798195854407,1.26766280701236,0,0,0,0,0,0,0,2.17748185847803,1.89008313664367,0.210324961351382,1.14260393761521,1.32521124570968,0.61245399607477,0.575072826109418,0,0,0,0,0.791317726381163,0.823388792421687,3.12548022334056,0,0,0,4.71405736757868,2.13557521198654,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,0.41889341362691,0,0,0,0,0,0,2.63874139437015,0,0,0,0,0,0,0,0,0,0,0.180062129805349,0,0.544291993210623,0.512454881139399,0.374806898238915,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0,0,0.164167464079095,0,0,0,0,0,2.36680608472354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0.167506257441816,0,0.390267295715598,0.315270288212382,0.221464689648775,0.318909537314974,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0.171853182343688,0,0,0,0.45032120322422,0,0,0.31136204275253,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0.367687016900028,0,0,0.320919209591815,0,0,0.377252682772152,0.37456602987953,0,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0.342869252385415,0.354951612318675,0.238436189947321,0.145346416632329,0.282328141245992,0.0846146078916765,0.365855945745545,0,0,0,0,0,0.818462086339379,0,0,0.999242311751784,0,0.644613162144895,0,0,0 | |||
|short_description=p@chr8:127354916..127354928,+ | |||
}} |
Revision as of 15:08, 14 September 2013
Short description: | p@chr8:127354916..127354928, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr8:127354916..127354928, + |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.24e-27 | 23 |
neuroblast (sensu Vertebrata) | 2.24e-27 | 23 |
neuron | 6.16e-19 | 33 |
neuronal stem cell | 6.16e-19 | 33 |
neuroblast | 6.16e-19 | 33 |
electrically signaling cell | 6.16e-19 | 33 |
neuron of the dorsal spinal cord | 1.72e-16 | 2 |
electrically responsive cell | 6.11e-16 | 39 |
electrically active cell | 6.11e-16 | 39 |
neural cell | 2.10e-14 | 43 |
ectodermal cell | 4.60e-14 | 44 |
neurectodermal cell | 4.60e-14 | 44 |
neuron of the ventral spinal cord | 6.55e-12 | 3 |
granule cell | 3.20e-11 | 3 |
embryonic cell | 1.35e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 7.99e-26 | 5 |
gray matter of spinal cord | 7.99e-26 | 5 |
spinal cord | 1.34e-21 | 6 |
dorsal region element | 1.34e-21 | 6 |
dorsum | 1.34e-21 | 6 |
gray matter | 1.22e-18 | 34 |
dorsal horn of spinal cord | 1.72e-16 | 2 |
central nervous system | 1.39e-12 | 73 |
nervous system | 3.15e-12 | 75 |
neural tube | 5.51e-12 | 52 |
neural rod | 5.51e-12 | 52 |
future spinal cord | 5.51e-12 | 52 |
neural keel | 5.51e-12 | 52 |
ventral horn of spinal cord | 6.55e-12 | 3 |
regional part of nervous system | 1.62e-11 | 54 |
posterior neural tube | 5.49e-11 | 12 |
chordal neural plate | 5.49e-11 | 12 |
neurectoderm | 1.30e-09 | 64 |
neural plate | 1.30e-09 | 64 |
presumptive neural plate | 1.30e-09 | 64 |
ectoderm-derived structure | 1.73e-09 | 95 |
ectoderm | 1.73e-09 | 95 |
presumptive ectoderm | 1.73e-09 | 95 |
ecto-epithelium | 2.44e-08 | 73 |
corpus striatum | 1.45e-07 | 5 |
striatum | 1.45e-07 | 5 |
ventral part of telencephalon | 1.45e-07 | 5 |
future corpus striatum | 1.45e-07 | 5 |
brain grey matter | 4.52e-07 | 29 |
regional part of telencephalon | 4.52e-07 | 29 |
telencephalon | 4.52e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.