FFCP PHASE1:Hg19::chr15:101459228..101459249,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79705 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18608 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-170bp_to_ENST00000388948_5end | |||
|description=CAGE_peak_4_at_LRRK1_5end | |||
|id=chr15:101459228..101459249,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!1.02e-08!20;UBERON:0002619!2.56e-08!22;UBERON:0001869!4.51e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.85e-25;20!UBERON:0002619;8.51e-23;22!UBERON:0000956;8.43e-20;25!UBERON:0000203;8.43e-20;25!UBERON:0001893;1.71e-17;34!UBERON:0001869;1.79e-17;32!UBERON:0003528;3.12e-15;34!UBERON:0002020;3.12e-15;34!UBERON:0002791;8.83e-15;32!UBERON:0000200;1.35e-14;6!UBERON:0001872;1.87e-11;5!UBERON:0002780;1.00e-09;41!UBERON:0001890;1.00e-09;41!UBERON:0001871;6.74e-08;6!UBERON:0002771;1.75e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,6.63e-26,20;UBERON:0002619,2.27e-23,22;UBERON:0001869,8.22e-21,32;UBERON:0000956,2.66e-20,25;UBERON:0000203,2.66e-20,25;UBERON:0001893,2.11e-19,34;UBERON:0002791,6.27e-18,32;UBERON:0003528,1.05e-16,34;UBERON:0002020,1.05e-16,34;UBERON:0002780,1.55e-15,41;UBERON:0001890,1.55e-15,41;UBERON:0003080,1.55e-15,41;UBERON:0006240,1.55e-15,41;UBERON:0000200,6.29e-15,6;UBERON:0000955,1.54e-13,68;UBERON:0006238,1.54e-13,68;UBERON:0003056,2.84e-12,61;UBERON:0001872,1.07e-11,5;UBERON:0000073,2.91e-11,53;UBERON:0002616,2.91e-11,53;UBERON:0001017,1.13e-10,81;UBERON:0001049,1.76e-10,56;UBERON:0005068,1.76e-10,56;UBERON:0006241,1.76e-10,56;UBERON:0007135,1.76e-10,56;UBERON:0002346,7.46e-10,86;UBERON:0003075,2.54e-09,82;UBERON:0007284,2.54e-09,82;UBERON:0001016,3.52e-09,89;UBERON:0007023,3.61e-09,114;UBERON:0010371,2.67e-08,104;UBERON:0001871,3.35e-08,6;UBERON:0002771,7.88e-08,2;UBERON:0004121,1.07e-07,171;UBERON:0000924,1.07e-07,171;UBERON:0006601,1.07e-07,171 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0.975865597581014,0.246242116153576,0,0.313454721478088,0,0,0,0.534893840235659,0.57470412614962,0.472264687882075,0.393364276848904,0,0,0,0.6024118375565,0,2.01414721508784,1.27952309238679,0.293600439334847,0.553995408531877,0,0.217010870715852,0.223915474239924,0,0,0,0,0.242584061187816,0,0,0.309706370895104,0,0.256160706529101,0.236482229888585,0,0,0,0,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0.521482918420201,0,0.605399502633369,0,0,0,0.425208599930087,0,0,0.300353785683013,0.48217676009124,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,0.50133791063589,0.579386075843295,0,0.486634870302636,0,0,0.175669571386252,1.17881167947941,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.476981248610684,0,0.371457501329565,0.198762407366705,0,0,0,0,0.275118041940067,0.417989933073621,0.258416759169329,0.35576626268671,0.66944122552934,0,0,0.976248230192678,0,0,0.0892997282840798,0,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,0,0.993943903390637,0.759783069987479,1.19168262731897,0,0.709336764396714,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0.937285727335186,0,0,0.448346041655403,0.23486899728753,0.323745888736263,0.280901613404497,0,0.737005903870608,0.206651562351531,1.18800285728205,0.494533858557114,0,0.718618141816238,0.336672227908132,0,0,0.438977620880838,0.30648779579902,0.751190294532984,0.226864366320042,0,0,0.211931901159562,0.600182192168805,0,0.257640540045629,0.558350568994769,0.168776332241266,0.0974370051611986,1.00973509697646,0.552299391853796,0.161646056818812,0.355009592516614,0.201504196455281,0,0.386521706326594,0.272746120590835,0,0,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,1.28648187638577,0,0,0,0,0.337169380156203,0.241011029883482,0.220587945464788,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.219500570817251,1.1240175325762,0.301586917234893,0,0,0,0,0.115930404975077,0.117408694235822,0.433099343283221,0,0.380508304469197,0,0,0,0.234004265139238,0.148631162288728,0,0.335964256397719,0,0.179117045405697,0,0.383382679165211,0,0.088048434013226,0,0.864719720501769,0.37872730027914,0.190493682876507,0.763976851116555,2.34434894420094,0,0.102827492703324,0.300343057843917,0.285826432630578,0.112131084345361,0,0.1466765716419,0.258543431515556,3.57656445851882,1.690605505112,0,0,0.771622122786426,0,0,0,0.542621605391443,0,0.325736184293735,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,0,0.664225598535437,0.368738337083406,0.260650843404249,0,0,0,0,0,0.303127571446259,0,0.604780586659361,0,0.153461973288062,0.561320188866147,0.256278298511402,0,0.321707842287215,0,0.308419387605311,0.532685175939381,0.492762936082855,0.519254429183621,0.232420756919918,0.120859449591622,0.200506470303285,0,0.68888668898764,0.182091168006717,0.131124414959424,0.451199612907412,0.231046011313244,1.56869953835371,1.46139224653261,0.422206515571503,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0,0.082509499920588,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0,0.275673144969061,0.107420244868274,0.435050081742686,0.681813019328807,0.0890320356467374,0,0.192190067365106,1.14851441245126,0.10115778085555,0,0.62962469366128,0,0.308033580176089,0.532306030317022,0,0.37064843820784,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0.823611089208164,0.117812402345686,0,0,0.421258456238981,2.43816869544795,0.243713489631284,0,0.409499734223957,0.282810863907425,2.26016233240486,1.10273068709225,0,0.438450885253763,0.578775534266688,0,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0.987884678879706,0,1.74967360122491,0.0962221127255121,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0.185803175125719,0.28853842595289,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0.642352300414798,0,0.425846237690326,0,0,0,0,0,0,0,0.270455678475983,0,0,0.37428108081644,0.146508179271894,0,0,0.852408440419239,0,0,0,0.994147647766298,1.68803299692615,1.33570446027487,0.329607748453519,0,0,0.828851746593443,0,1.22722419002586,0.369254416383208,0,0.449341755736634,0,0,0.197286811273867,0,0,5.81599647657131,2.50473865036998,1.99613798001194,0,0,0,0,0,0,1.37897349296586,0,0.173624994933292,0,0.361789315876224,0,0.663475559587348,0.295547618953547,0.87754158861589,0,0,0.461701551022782,0.341826167541004,0,0,0,0,0,0,0,0.470940769185074,0.332423363800313,0,0,0,0,0,0,0,0,0,1.99052386215701,0.530745387020035,0,0,0,0,0.134802265961354,0,0,0.547364367646998,0,0.485560759068186,1.18375320854817,0,0,0.63186579628488,0,0,0,0.992975867626496,0.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| |||
|short_description=p4@LRRK1 | |||
}} |
Revision as of 01:33, 12 January 2014
Short description: | p4@LRRK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LRRK1_5end |
Coexpression cluster: | NA |
Association with transcript: | -170bp_to_ENST00000388948_5end |
EntrezGene: | LRRK1 |
HGNC: | 18608 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 6.63e-26 | 20 |
regional part of cerebral cortex | 2.27e-23 | 22 |
cerebral hemisphere | 8.22e-21 | 32 |
cerebral cortex | 2.66e-20 | 25 |
pallium | 2.66e-20 | 25 |
telencephalon | 2.11e-19 | 34 |
regional part of telencephalon | 6.27e-18 | 32 |
brain grey matter | 1.05e-16 | 34 |
gray matter | 1.05e-16 | 34 |
regional part of forebrain | 1.55e-15 | 41 |
forebrain | 1.55e-15 | 41 |
anterior neural tube | 1.55e-15 | 41 |
future forebrain | 1.55e-15 | 41 |
gyrus | 6.29e-15 | 6 |
brain | 1.54e-13 | 68 |
future brain | 1.54e-13 | 68 |
pre-chordal neural plate | 2.84e-12 | 61 |
parietal lobe | 1.07e-11 | 5 |
regional part of nervous system | 2.91e-11 | 53 |
regional part of brain | 2.91e-11 | 53 |
central nervous system | 1.13e-10 | 81 |
neural tube | 1.76e-10 | 56 |
neural rod | 1.76e-10 | 56 |
future spinal cord | 1.76e-10 | 56 |
neural keel | 1.76e-10 | 56 |
neurectoderm | 7.46e-10 | 86 |
neural plate | 2.54e-09 | 82 |
presumptive neural plate | 2.54e-09 | 82 |
nervous system | 3.52e-09 | 89 |
adult organism | 3.61e-09 | 114 |
ecto-epithelium | 2.67e-08 | 104 |
temporal lobe | 3.35e-08 | 6 |
middle temporal gyrus | 7.88e-08 | 2 |
ectoderm-derived structure | 1.07e-07 | 171 |
ectoderm | 1.07e-07 | 171 |
presumptive ectoderm | 1.07e-07 | 171 |