FFCP PHASE1:Hg19::chr16:57653946..57653968,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9289 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4512 | |||
|TSSclassifier=strong | |||
|UniProt=B3KQN7,B3KQV4,Q9Y653 | |||
|association_with_transcript=36bp_to_NM_001145770,NM_005682,uc002emb.2,uc002emc.2_5end | |||
|coexpression_cluster_id=C2379 | |||
|description=CAGE_peak_4_at_GPR56_5end | |||
|id=chr16:57653946..57653968,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.94e-35!254;CL:0002076!3.55e-24!43;CL:0000223!2.63e-21!59;CL:0002251!7.31e-12!21;CL:0002368!2.19e-10!13;CL:0002159!1.94e-07!13;CL:0002202!9.29e-07!9;CL:0002632!9.29e-07!9;CL:0000082!9.43e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.10e-18;42!CL:0002368;1.54e-11;13!CL:0002251;1.54e-10;20!CL:0002202;1.83e-07;9!CL:0002632;1.83e-07;9!CL:0002159;1.86e-07;14!CL:1000507;3.63e-07;10!CL:1000494;3.63e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.26e-36,253;CL:0002076,4.19e-23,42;CL:0000223,5.08e-21,58;CL:0002368,1.61e-11,13;CL:0002251,1.63e-10,20;CL:0002159,1.79e-07,14;CL:0002202,1.87e-07,9;CL:0002632,1.87e-07,9;CL:1000507,3.65e-07,10;CL:1000494,3.65e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000223;2.59e-11;58!UBERON:0006595;9.83e-10;86!UBERON:0008947;1.11e-08;29 | |||
|ontology_enrichment_disease=DOID:305!3.74e-28!106;DOID:0050687!1.39e-19!143;DOID:1749!1.05e-10!14;DOID:299!1.92e-09!25;DOID:162!9.32e-08!235;DOID:14566!3.54e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.04e-12;14!DOID:305;2.01e-09;106!DOID:299;7.84e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.16e-27,106;DOID:0050687,7.38e-20,143;DOID:1749,7.11e-12,14;DOID:299,8.20e-09,25;DOID:162,1.22e-07,235;DOID:14566,4.13e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.53e-33!169;UBERON:0000925!3.53e-33!169;UBERON:0006595!3.53e-33!169;UBERON:0001007!9.01e-26!155;UBERON:0001555!9.01e-26!155;UBERON:0007026!9.01e-26!155;UBERON:0004921!2.88e-23!129;UBERON:0004185!2.88e-23!129;UBERON:0001004!1.16e-22!72;UBERON:0000077!1.52e-22!130;UBERON:0001041!2.55e-17!98;UBERON:0000065!6.39e-17!53;UBERON:0000466!2.05e-16!126;UBERON:0000464!3.52e-16!104;UBERON:0008947!1.41e-13!38;UBERON:0003258!1.41e-13!38;UBERON:0005911!2.12e-13!82;UBERON:0000072!1.09e-12!46;UBERON:0000062!2.15e-12!511;UBERON:0005177!2.27e-11!107;UBERON:0001008!2.30e-11!45;UBERON:0006554!7.39e-11!44;UBERON:0005153!2.12e-10!37;UBERON:0000161!3.03e-10!35;UBERON:0003104!3.07e-10!238;UBERON:0009142!3.07e-10!238;UBERON:0009569!9.30e-10!113;UBERON:0005178!1.80e-09!34;UBERON:0002224!1.80e-09!34;UBERON:0004175!4.42e-09!25;UBERON:0005181!5.32e-09!35;UBERON:0005156!6.45e-09!59;UBERON:0000990!6.45e-09!59;UBERON:0000166!6.88e-09!21;UBERON:0000058!1.55e-08!26;UBERON:0003133!2.27e-08!48;UBERON:0002553!2.87e-08!70;UBERON:0002048!6.22e-08!22;UBERON:0000117!6.22e-08!22;UBERON:0000171!6.22e-08!22;UBERON:0000170!6.22e-08!22;UBERON:0005597!6.22e-08!22;UBERON:0000118!6.22e-08!22;UBERON:0000064!6.88e-08!219;UBERON:0001048!9.68e-08!168;UBERON:0004807!1.64e-07!28;UBERON:0000915!2.16e-07!52;UBERON:0000481!2.28e-07!347;UBERON:0000468!2.36e-07!659;UBERON:0000344!2.53e-07!12;UBERON:0000922!3.13e-07!612;UBERON:0000467!3.30e-07!625;UBERON:0000480!3.99e-07!626;UBERON:0005631!4.01e-07!14;UBERON:0000158!4.01e-07!14;UBERON:0005157!4.81e-07!51;UBERON:0003100!5.42e-07!41;UBERON:0003064!6.82e-07!37;UBERON:0002050!7.27e-07!605;UBERON:0005423!7.27e-07!605;UBERON:0003975!7.84e-07!22;UBERON:0002113!8.01e-07!27;UBERON:0003918!8.01e-07!27;UBERON:0005095!8.01e-07!27;UBERON:0007687!8.01e-07!27;UBERON:0004802!9.43e-07!19;UBERON:0000115!9.43e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;8.55e-11;44!UBERON:0006554;2.33e-10;30!UBERON:0001008;2.33e-10;30!UBERON:0001004;1.03e-09;65!UBERON:0005911;2.34e-09;36!UBERON:0000072;2.74e-09;37!UBERON:0004807;4.31e-09;22!UBERON:0004921;1.41e-08;33!UBERON:0005178;5.70e-08;34!UBERON:0002224;5.70e-08;34!UBERON:0005181;1.59e-07;35!UBERON:0000344;2.85e-07;20!UBERON:0004211;3.63e-07;10!UBERON:0009773;3.63e-07;10!UBERON:0001231;3.63e-07;10!UBERON:0004810;3.63e-07;10!UBERON:0002048;4.12e-07;22!UBERON:0000117;4.12e-07;22!UBERON:0000171;4.12e-07;22!UBERON:0000170;4.12e-07;22!UBERON:0001555;4.65e-07;54!UBERON:0004175;6.01e-07;21!UBERON:0000161;6.42e-07;19!UBERON:0000166;6.42e-07;19!UBERON:0000365;6.68e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.94e-31,160;UBERON:0000925,5.94e-31,160;UBERON:0006595,5.94e-31,160;UBERON:0001007,1.90e-23,145;UBERON:0001555,1.90e-23,145;UBERON:0007026,1.90e-23,145;UBERON:0004921,1.56e-20,118;UBERON:0001004,2.26e-19,74;UBERON:0001008,2.72e-15,48;UBERON:0000065,4.71e-15,54;UBERON:0006554,1.07e-14,47;UBERON:0001041,1.72e-14,87;UBERON:0005177,1.04e-12,101;UBERON:0005911,1.44e-12,82;UBERON:0008947,1.97e-12,38;UBERON:0003258,1.97e-12,38;UBERON:0000072,1.64e-11,47;UBERON:0005153,3.30e-10,37;UBERON:0009569,6.80e-10,112;UBERON:0000161,1.50e-09,36;UBERON:0004175,2.58e-09,25;UBERON:0005178,3.77e-09,34;UBERON:0002224,3.77e-09,34;UBERON:0005181,1.02e-08,35;UBERON:0005156,1.09e-08,59;UBERON:0000990,1.09e-08,59;UBERON:0005157,2.18e-08,47;UBERON:0005631,6.59e-08,14;UBERON:0000158,6.59e-08,14;UBERON:0003133,7.90e-08,48;UBERON:0000915,1.43e-07,52;UBERON:0003100,1.50e-07,41;UBERON:0002113,1.63e-07,26;UBERON:0003918,1.63e-07,26;UBERON:0011143,1.63e-07,26;UBERON:0005095,1.63e-07,26;UBERON:0007687,1.63e-07,26;UBERON:0000166,1.86e-07,22;UBERON:0000489,2.46e-07,31;UBERON:0000344,2.99e-07,20;UBERON:0004810,3.65e-07,10;UBERON:0002048,4.32e-07,22;UBERON:0000117,4.32e-07,22;UBERON:0000171,4.32e-07,22;UBERON:0000170,4.32e-07,22;UBERON:0005597,4.32e-07,22;UBERON:0000118,4.32e-07,22;UBERON:0004807,5.46e-07,28;UBERON:0000365,6.56e-07,5;UBERON:0003975,7.16e-07,22;UBERON:0005795,9.34e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,12.2866968250754,32.7966548947041,9.82986174585775,12.3970479767373,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0,0.309632246632152,4.59710612239464,18.072355126695,34.3871229455113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5511961166935,21.49342200926,14.0898088258083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.4437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.7958671213312,16.6375133560409,22.3707584403423,0,0,0,0.207322110030741,0,0,0,0,0,0,0,2.83936320095625,2.19160097101532,1.44606617930089,2.53676137284506,2.61455332910887,1.89816495288877,1.34831308160164,1.17732879075208,0.769494313892781,0,0,0.4115740113314,0,0,0,0,0,14.2666588710012,0,20.9623045130475,24.7283857166763,7.84125984810721,10.5550827480724,0,0,0,0,0,0,0,0,15.8040879591855,18.0282094039923,0,0,0,12.185398418281,18.8139983582723,13.0433089462996,15.8518585184041,8.4283842169049,21.4694300332518,0,0,0.207328115540772,0.144119953416961,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94065842880137,6.65741758041988,4.5358543999452,0,0,0,0,0,0,0,0,0,0,0,0,11.2399288120209,38.0962293576241,48.3425191913456,0,0,0,22.1087810324632,8.62571775569445,7.84349769176855,7.30696123266303,10.5551628892876,0,0,0,0,0.270946437543853,4.01351819083883,7.39141191830611,21.6079762321468,7.38786690583188,0,0,0,0,0,10.7162652113631,0,0,7.46545199395024,7.80072295243825,0,0,0,0,0,0,0,0,0,24.2968825580638,35.9395425972749,15.0583000743609,54.3217283194303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3370947961013,10.0545341330368,18.5114674264248,12.2386941009813,45.6335695031504,26.9554361068201,34.5875519758607,25.2695740227655,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.6027135053096,0,0,0,0,4.05865624054073,4.15750553165694,5.83605333988541,0,0,0,0,0,3.58646378851925,1.65770349318689,1.25966373927138,0.102268682502155,0.246169610922139,0,3.41499734359842,67.4909828527046,0,1.87422470710174,0,0,0,0,0,38.2828808795293,20.4656399991098,3.62499787717397,3.86897724170699,63.054905272606,18.674626859667,3.79217710565611,0,0,0,0,0,0,0,0,14.3798771845067,18.1250867562184,4.00141344219745,0,29.5121797616717,20.5545005698378,9.99555821682474,3.82801391678303,32.2423528774555,5.86338253620498,0,0,0,0,0,0,0,0,0,14.5277199261641,7.06765357169704,0,1.99052386215701,2.91909962861019,6.11030144933625,0,0,0,0,0,0,0,59.2863795364232,0,29.9884146165537,8.46935012340647,0,0,0,0,0,0,0,0,9.10750547295337,0,13.3640998518051,9.01530056212274,10.4471047896483,25.3353668950944,0,15.964794662699,27.6277618585781,13.7132813278859,6.40127508823568,0,1.80784592624426,0,0,0,10.950877433149,3.68730573157055,24.1201884055468,0.39961921916426,44.6680293177729,0,0,0,0,71.6509865235058,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,8.78587602195561,0,0,0.0671834724867263,0,38.4436633440598,5.90873867304177,6.67568452887448,5.05526578906387,0,0,0,0,0,0,0,0.899895566206002,0,0,23.4804281319486,74.7866162269391,31.5252074691339,0,0,36.4638874906946,0,0,8.39086174260675,0,0,0,0,0,0,0,0.439656701034247,0,0.258565912723101,0,1.36869470307464,19.0300056025501,3.20362237703084,1.25763444079733,0.828478110694391,0,0,0,65.7491495503287,0,0,0,0,137.422334218955,0,0,0,0,0,0,0,21.3716497615202,0,0,0,0,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79369063011563,0.345430341731199,0,0,0,0.132864840313363,0,0,0,62.1257642674364,0,0,0,0,0,41.2644547772361,34.8363265618465,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,42.8905529849482,7.55006229425538,15.7748594728644,23.3361845623683,0,0,0,1.5794168953344,0,67.991718977279,96.119756874682,0,34.0068998299204,0,0,0,0,0,39.4745592137171,1.48863353516788,0,41.7783138381477,0,0,1.82089681270989,2.95960848756687,24.9253660157015,0,0,0,0,0,1.22354542081276,6.04396814948958,0,21.300684411848,0.913158720509496,20.9449763482063,0,0.0714765441766563,0,0,0,0,0.62164849248911,0.51215543128185,13.1339335744677,59.8016028760186,0,0,28.7903194129832,26.8055036196539,0.31020638566432,0,35.4581718799002,69.3922151659768,7.5589113489007,0,0,0,2.91426595835484,5.61454712309054,6.96327713064789,0,35.6909619243114,0,20.6819095686343,2.62392137567012,9.17950154116621,128.396621906696,0.735444965261716,54.9126354746788,0,0,0,0,0,0,0,29.9970616857505,16.9389538423532,39.7194765111383,6.57302749421866,21.5602763200134,0,0,0,0,6.34832208618481,0,0,0,0,0,0,0.713921808193872,0.534434810531121,8.36243585767089,0,8.86610769153401,9.9146728157786,0,0,6.39701945702943,8.57031953269465,0.775066918032073,1.1794195716213,0,40.543239823191,22.8392423522788,6.96693593270276,3.76456631193809,9.02517510395473,16.5678294457082,5.32256570473621,18.6413485119132,0,0,0,4.69281884806909,1.34465588601153,2.03448089157869,7.32332451604064,0.201273793591026,0 | |||
|short_description=p4@GPR56 | |||
}} |
Revision as of 11:40, 20 January 2014
Short description: | p4@GPR56 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GPR56_5end |
Coexpression cluster: | C2379_smallcell_maxillary_malignant_kidney_pancreatic_signet_bronchioalveolar |
Association with transcript: | 36bp_to_NM_001145770, NM_005682, uc002emb.2, uc002emc.2_5end |
EntrezGene: | GPR56 |
HGNC: | 4512 |
UniProt: | B3KQN7B3KQV4Q9Y653 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.26e-36 | 253 |
endo-epithelial cell | 4.19e-23 | 42 |
endodermal cell | 5.08e-21 | 58 |
respiratory epithelial cell | 1.61e-11 | 13 |
epithelial cell of alimentary canal | 1.63e-10 | 20 |
general ecto-epithelial cell | 1.79e-07 | 14 |
epithelial cell of tracheobronchial tree | 1.87e-07 | 9 |
epithelial cell of lower respiratory tract | 1.87e-07 | 9 |
kidney tubule cell | 3.65e-07 | 10 |
nephron tubule epithelial cell | 3.65e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.16e-27 | 106 |
cell type cancer | 7.38e-20 | 143 |
squamous cell carcinoma | 7.11e-12 | 14 |
adenocarcinoma | 8.20e-09 | 25 |
cancer | 1.22e-07 | 235 |
disease of cellular proliferation | 4.13e-07 | 239 |