FFCP PHASE1:Hg19::chr17:11900902..11900950,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:11900902..11900950,+ | |||
|id=chr17:11900902..11900950,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000746;1.77e-07;7!CL:1000612;1.77e-07;7!CL:0000128;7.79e-07;7!CL:0000126;7.79e-07;7!CL:0000127;7.79e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000746,3.29e-07,7;CL:1000612,3.29e-07,7;CL:0000128,6.86e-07,7;CL:0000126,6.86e-07,7;CL:0000127,6.86e-07,7;CL:0002453,6.86e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.21e-08!57;UBERON:0005068!9.21e-08!57;UBERON:0006241!9.21e-08!57;UBERON:0007135!9.21e-08!57;UBERON:0001017!1.08e-07!82;UBERON:0005743!1.59e-07!86;UBERON:0002616!3.03e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;6.89e-08;6!UBERON:0000074;1.77e-07;7!UBERON:0001229;1.77e-07;7!UBERON:0003296;7.55e-07;4!UBERON:0010133;7.55e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.04e-10,86;UBERON:0003075,6.10e-10,82;UBERON:0007284,6.10e-10,82;UBERON:0000073,3.08e-09,53;UBERON:0002616,3.08e-09,53;UBERON:0001049,3.16e-09,56;UBERON:0005068,3.16e-09,56;UBERON:0006241,3.16e-09,56;UBERON:0007135,3.16e-09,56;UBERON:0002037,1.65e-08,6;UBERON:0006215,1.65e-08,6;UBERON:0003056,2.61e-08,61;UBERON:0001017,6.12e-08,81;UBERON:0010532,3.29e-07,7;UBERON:0000074,3.29e-07,7;UBERON:0001229,3.29e-07,7;UBERON:0001230,3.29e-07,7;UBERON:0003220,3.29e-07,7;UBERON:0005749,3.29e-07,7;UBERON:0004199,3.29e-07,7;UBERON:0004209,3.29e-07,7;UBERON:0004198,3.29e-07,7;UBERON:0010371,4.07e-07,104;UBERON:0002680,4.30e-07,9;UBERON:0001895,4.30e-07,9;UBERON:0010092,4.30e-07,9;UBERON:0000955,6.08e-07,68;UBERON:0006238,6.08e-07,68;UBERON:0001016,6.32e-07,89;UBERON:0003296,8.32e-07,4;UBERON:0010133,8.32e-07,4 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.281908808191942,1.0007329835313,1.34088328328186,0.872338524100369,2.53299878168311,0,1.30592814099919,1.72013755551056,6.97801167972428,1.09220686065086,0.527533956456907,0.123766352960047,0.331397375727916,0.672325146451775,1.20538905604795,0.730310090387373,0,1.84681587115182,2.85600967741954,3.13454721478088,1.14494394852423,2.46373965131192,2.00868223351684,1.52826811495903,1.06730766284929,0.708397031823113,0.786728553697808,0,0.464448369948228,0.919421224478927,3.0120591877825,0.739508020333575,1.39440961044543,0.426507697462265,0.293600439334847,0,0.200544447470142,0.434021741431704,0.447830948479849,0.32389366601898,0.257575567634187,1.74477886535478,1.13362783106643,1.69808842831471,1.16214518452842,1.23350366406548,1.85823822537062,0.28769239232215,0.768482119587302,1.18241114944293,1.03423704220986,0,0,0.376484679085209,0.272906150057846,0.449446968890169,0.918251677112708,0,0,0.659702600373432,0.598390972864896,0.852449501065388,0.290209238628584,0,1.86846674698672,1.00499466102697,0.521482918420201,1.52032191293582,0,1.84138817993782,0.316462387440884,0.633765858935825,0.425208599930087,0.209658645508376,0.786300418025466,0.300353785683013,0.964353520182481,0.570025487482497,0.19891667719909,0.547992461293902,1.75996244461323,0,0.889509253863555,0.426730222566507,1.20118796110804,0,0,0.954053754535364,0,0.587237189370939,0,0,0,0,0.393419540227666,0.786021525498329,0.616804496998528,0.668745981562712,0.32592226663359,1.89379122293893,1.94826728407911,0.222820913770347,0.294605907474837,0.664601683750863,0.270803863765016,0.128091319725675,0.260118695119756,0.493313713811028,1.38175008892924,1.15921234294021,1.4828656316206,1.07016331235885,1.04535523804977,0.226618685395132,0.766440987203842,0.68725489096526,0.759059076058509,1.27426165729639,2.60433381542567,0.950452044448374,0.451725357233318,1.02389288923535,0,1.18388626022008,0,1.20964045934839,0.534880391567015,0.868946423296794,0,0,0.12786256184353,0,0,0.144846518960824,0.795285947051099,0,1.22895262313288,1.33037638477538,0.43917392846563,0.589405839739707,0,2.22470665670658,0.649094787309367,0,0.26591592103773,0,0,0,0.39752481473341,0.860234595106124,1.04142150482278,0.56530794192401,1.25849830862972,0.825354125820202,0.208994966536811,0.516833518338658,0,1.00416183829401,0,0.760272105718513,1.46437234528902,0.367663080345869,0.81014194788176,0.446498641420399,0.673588117878509,1.35133776579987,0,0.949265659568129,0.549605231791222,10.5424333948851,7.75560528296651,1.3082821564276,0.496971951695318,0,0.132409180813219,0,0,0,0,0.24666754841716,0.311211035399766,0.269421344139376,0.817309515567294,0.454072282934794,1.72852777344,1.40592859100278,0.936480230490962,0.570471821544449,0.448346041655403,0.939475989150119,0.647491777472526,1.68540968042698,0.204154171254893,0.368502951935304,0.413303124703062,2.37600571456411,0.494533858557114,0,2.87447256726495,1.17835279767846,1.00094815897571,0.554128230968366,0,0.30648779579902,0.300476117813194,0.226864366320042,0,0.213557388818567,0.635795703478686,0.300091096084402,0.412210116953756,0,0.18611685633159,0,0.779496041289589,0.252433774244115,0.276149695926898,0.323292113637624,0.710019185033229,0.604512589365842,0.169560592310488,0.193260853163297,0.272746120590835,0.286804595389004,0.975789649036763,1.32529768321485,0.232387885739037,0.829288440122964,0.756962552626885,1.09493207722749,1.56449532329816,0,2.76269842704961,0,0,0.591534000199219,1.18009283054671,0.241011029883482,0.330881918197182,0.653638332277218,0,0.269662616320329,0.588664395376038,0.38474715694639,0.738155454624648,1.40241773803446,0.4115740113314,7.3504355692771,0,0,0,0,0.614942192715568,0.514703430895577,0.439001141634502,0,0.201057944823262,0.370353780634118,0.325808305310325,2.07986957055916,0,1.27523445472584,0.469634776943287,0.721832238805369,0,0.570762456703795,5.53143078571493,5.15091697256924,0.246217006087397,0,0.148631162288728,0,0.16798212819886,0.283550194484773,0,0,0,1.97065295158377,0.704387472105808,0.207328115540772,1.15295962733569,0.12624243342638,0.888970520090367,1.14596527667483,0,0,0.514137463516618,0.901029173531752,0,1.68196626518041,4.79556075716608,0.5867062865676,0,10.7296933755565,0,0.26593811658487,2.08014873822732,1.02882949704857,1.41849132023278,3.99633268524149,0.57191197463259,2.71310802695722,4.11620168390384,0,0,0.791951872933429,0.904318131178758,0,0.199945982364114,0,0,0,0,1.14861935834114,0,0.289562613335158,0.410952645100767,0.895304816199478,0.448340575974109,0.788123040807709,0.431255149719035,0.898401253958239,0.76228387266739,1.30139853857622,0.773288812777695,0.837581326671744,3.18969375826582,16.478154526838,5.9832291840805,17.8198670777495,0.36807447515742,0,0.271265023699736,0.415941723061614,0.178428988797162,0.157702415033935,0.468565659970853,0,0,0,0,0.921845842708516,0.695068915744663,1.56640925970192,1.37257369524342,0.620304078368662,1.07857100409308,0.213455115606889,0.303127571446259,0,0.907170879989041,0.248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| |||
|short_description=p@chr17:11900902..11900950,+ | |||
}} |
Revision as of 13:58, 20 January 2014
Short description: | p@chr17:11900902..11900950, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:11900902..11900950, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular cell | 3.29e-07 | 7 |
kidney corpuscule cell | 3.29e-07 | 7 |
oligodendrocyte | 6.86e-07 | 7 |
macroglial cell | 6.86e-07 | 7 |
astrocyte | 6.86e-07 | 7 |
oligodendrocyte precursor cell | 6.86e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.04e-10 | 86 |
neural plate | 6.10e-10 | 82 |
presumptive neural plate | 6.10e-10 | 82 |
regional part of nervous system | 3.08e-09 | 53 |
regional part of brain | 3.08e-09 | 53 |
neural tube | 3.16e-09 | 56 |
neural rod | 3.16e-09 | 56 |
future spinal cord | 3.16e-09 | 56 |
neural keel | 3.16e-09 | 56 |
cerebellum | 1.65e-08 | 6 |
rhombic lip | 1.65e-08 | 6 |
pre-chordal neural plate | 2.61e-08 | 61 |
central nervous system | 6.12e-08 | 81 |
primitive nephron | 3.29e-07 | 7 |
renal glomerulus | 3.29e-07 | 7 |
renal corpuscle | 3.29e-07 | 7 |
glomerular capsule | 3.29e-07 | 7 |
metanephric mesenchyme | 3.29e-07 | 7 |
glomerular tuft | 3.29e-07 | 7 |
S-shaped body | 3.29e-07 | 7 |
renal vesicle | 3.29e-07 | 7 |
comma-shaped body | 3.29e-07 | 7 |
ecto-epithelium | 4.07e-07 | 104 |
regional part of metencephalon | 4.30e-07 | 9 |
metencephalon | 4.30e-07 | 9 |
future metencephalon | 4.30e-07 | 9 |
brain | 6.08e-07 | 68 |
future brain | 6.08e-07 | 68 |
nervous system | 6.32e-07 | 89 |
gland of diencephalon | 8.32e-07 | 4 |
neuroendocrine gland | 8.32e-07 | 4 |