FFCP PHASE1:Hg19::chr19:19030157..19030210,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11316 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2234 | |||
|TSSclassifier=strong | |||
|UniProt=O14579,A6NE29,A6NKA3,F5H1E1 | |||
|association_with_transcript=0bp_to_ENST00000262812,ENST00000349893,ENST00000351079,ENST00000538245,NM_007263,NM_199442,NM_199444,uc002nkk.2,uc002nkl.2,uc002nkm.2,uc002nkn.2_5end | |||
|coexpression_cluster_id=C385 | |||
|description=CAGE_peak_1_at_COPE_5end | |||
|id=chr19:19030157..19030210,- | |||
|ontology_enrichment_celltype=CL:0000144!3.69e-53!625;CL:0002371!9.48e-53!591;CL:0000012!1.93e-40!682;CL:0000548!4.23e-40!679;CL:0000004!4.23e-40!679;CL:0000255!4.23e-40!679;CL:0000003!1.18e-32!722;CL:0000723!8.52e-26!436;CL:0000048!2.32e-25!430;CL:0000034!3.47e-25!444;CL:0000063!3.69e-18!578;CL:0000192!1.02e-15!42;CL:0000514!1.02e-15!42;CL:0000222!2.39e-15!119;CL:0000183!3.20e-14!59;CL:0002320!3.89e-13!365;CL:0000359!8.21e-13!32;CL:0000680!1.45e-12!57;CL:0000056!1.45e-12!57;CL:0000355!1.45e-12!57;CL:0000134!1.77e-12!358;CL:0000187!2.41e-12!54;CL:0000220!4.61e-12!246;CL:0002321!1.27e-11!248;CL:0000219!3.35e-11!390;CL:0000055!4.79e-11!180;CL:0000393!2.00e-10!60;CL:0000211!2.00e-10!60;CL:0000766!2.04e-07!76;CL:0002194!2.74e-07!63;CL:0000576!2.74e-07!63;CL:0000040!2.74e-07!63;CL:0000559!2.74e-07!63;CL:0002057!2.91e-07!42;CL:0000860!9.72e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.31e-12;32!CL:0000192;4.83e-11;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000723,7.41e-26,433;CL:0000048,2.01e-25,427;CL:0000034,3.06e-25,441;CL:0000192,2.55e-15,43;CL:0000514,2.55e-15,43;CL:0000222,3.70e-15,121;CL:0002320,3.01e-13,361;CL:0000359,8.21e-13,32;CL:0000134,1.37e-12,354;CL:0000680,2.53e-12,58;CL:0000056,2.53e-12,58;CL:0000355,2.53e-12,58;CL:0000187,4.28e-12,55;CL:0002321,1.41e-11,250;CL:0000219,2.74e-11,386;CL:0000393,3.11e-10,61;CL:0000211,3.11e-10,61;CL:0000766,5.14e-08,72;CL:0000473,5.51e-08,48;CL:0000234,5.51e-08,48;CL:0002194,5.63e-08,59;CL:0000576,5.63e-08,59;CL:0000040,5.63e-08,59;CL:0000559,5.63e-08,59;CL:0002009,2.43e-07,61;CL:0000860,2.91e-07,42;CL:0002057,2.91e-07,42;CL:0000839,8.94e-07,66 | |||
|ontology_enrichment_development_v019=CL:0000514;4.83e-11;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.72e-15!216;UBERON:0002204!5.87e-13!167;UBERON:0002049!3.94e-12!79;UBERON:0007798!3.94e-12!79;UBERON:0002384!1.61e-11!375;UBERON:0001637!3.77e-11!42;UBERON:0003509!3.77e-11!42;UBERON:0004572!3.77e-11!42;UBERON:0000055!1.80e-10!69;UBERON:0004290!3.47e-10!70;UBERON:0001134!8.15e-10!61;UBERON:0002036!8.15e-10!61;UBERON:0003082!8.15e-10!61;UBERON:0004872!8.48e-10!84;UBERON:0000914!1.13e-09!83;UBERON:0002329!1.13e-09!83;UBERON:0003077!1.13e-09!83;UBERON:0003059!1.13e-09!83;UBERON:0007282!1.13e-09!83;UBERON:0009618!1.13e-09!83;UBERON:0007285!1.13e-09!83;UBERON:0000486!2.49e-09!82;UBERON:0003914!3.92e-09!118;UBERON:0004535!4.37e-09!110;UBERON:0002385!8.32e-09!63;UBERON:0001015!8.32e-09!63;UBERON:0000383!8.32e-09!63;UBERON:0001981!1.09e-08!60;UBERON:0007500!1.09e-08!60;UBERON:0004537!1.09e-08!60;UBERON:0006965!1.09e-08!60;UBERON:0000490!1.15e-08!138;UBERON:0005256!2.36e-08!143;UBERON:0001009!4.23e-08!113;UBERON:0004573!1.62e-07!33;UBERON:0004571!1.62e-07!33;UBERON:0002405!4.54e-07!115;UBERON:0002371!5.35e-07!80;UBERON:0000926!5.57e-07!448;UBERON:0004120!5.57e-07!448;UBERON:0006603!5.57e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.72e-08;42!UBERON:0003509;7.72e-08;42!UBERON:0004572;7.72e-08;42!UBERON:0003914;7.34e-07;74!UBERON:0007500;8.00e-07;56!UBERON:0001981;8.00e-07;56!UBERON:0004537;8.00e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,5.63e-14,203;UBERON:0002204,3.98e-13,167;UBERON:0002049,1.84e-12,78;UBERON:0007798,1.84e-12,78;UBERON:0007503,8.64e-12,78;UBERON:0002384,1.29e-11,371;UBERON:0000926,1.87e-11,315;UBERON:0004120,1.87e-11,315;UBERON:0006603,1.87e-11,315;UBERON:0001637,3.77e-11,42;UBERON:0003509,3.77e-11,42;UBERON:0004572,3.77e-11,42;UBERON:0000055,8.54e-11,68;UBERON:0004872,4.57e-10,83;UBERON:0002329,5.06e-10,71;UBERON:0003059,5.06e-10,71;UBERON:0007282,5.06e-10,71;UBERON:0004290,5.06e-10,71;UBERON:0009618,5.06e-10,71;UBERON:0007524,6.67e-10,73;UBERON:0003077,1.04e-09,72;UBERON:0007285,1.04e-09,72;UBERON:0001134,1.23e-09,62;UBERON:0002036,1.23e-09,62;UBERON:0003082,1.23e-09,62;UBERON:0004535,2.68e-09,109;UBERON:0003914,3.15e-09,117;UBERON:0000486,3.37e-09,83;UBERON:0000490,3.65e-09,148;UBERON:0007500,5.35e-09,59;UBERON:0001981,5.35e-09,59;UBERON:0004537,5.35e-09,59;UBERON:0006965,5.35e-09,59;UBERON:0002385,1.19e-08,64;UBERON:0001015,1.19e-08,64;UBERON:0000383,1.19e-08,64;UBERON:0001009,2.72e-08,112;UBERON:0002371,1.53e-07,76;UBERON:0004573,1.62e-07,33;UBERON:0004571,1.62e-07,33;UBERON:0002405,2.11e-07,93;UBERON:0005256,7.94e-07,122;UBERON:0003104,9.96e-07,160;UBERON:0009142,9.96e-07,160 | |||
|phase1_expression=149.157949381127,172.350921732241,139.685814459107,137.100418743789,116.209884551095,136.084809759658,222.903892788113,198.991760129452,176.561484663091,228.778294882905,417.982899615484,175.626863192659,215.761388190875,170.921333437824,132.890347666894,143.87758134068,180.808358407193,169.431940969871,189.805858729507,202.164777362086,203.796690553009,253.271414954295,146.839061398232,125.650722216908,142.114268021317,141.670454256702,138.667895580958,131.447004793844,198.255595531848,145.471341878844,187.172693089136,176.528875099954,206.928466200658,193.751101327397,142.849517870076,92.410001116824,172.04985745022,170.076590419286,139.578935439219,155.596794303266,156.293001019467,125.994636081383,120.802941220433,175.931868923273,145.482238320192,145.55043671269,186.408087598359,164.46715520873,157.021130043818,214.906217064646,171.627673374497,178.78056579577,196.505038019873,120.060151146592,146.260605521889,216.10220579491,147.096414881179,155.508651235999,254.35571456022,166.241236025416,191.801137739712,172.842081297839,166.751617771684,140.654167675789,269.314173447326,194.04574684437,209.891097911509,183.914022967936,158.530807199741,179.615174571131,252.451592598115,192.977481257484,199.054841700316,167.736697331682,160.516246473608,192.676295222197,181.41073930159,164.143343875766,116.526050355383,213.474545062195,146.203757741331,152.524568393469,179.516169350549,136.534652815533,138.763443602715,154.903070791642,121.319984071912,112.651478231079,156.006589977227,164.097245780083,97.3354177177157,89.2600527843827,103.978318050062,136.136468436397,102.573067025621,166.458741577849,95.6009482753229,90.3924754323079,104.239959992751,98.3056592897187,117.332015988093,124.0433251025,72.0858895109272,144.833593950726,127.858963844079,144.218565373937,89.6360789062202,145.767921847818,133.701009291555,162.957963462243,156.966810102362,113.602809608141,94.0136810447463,81.3324117392728,70.0388009493344,127.359701192064,146.390228555934,155.663232803631,88.3038725148065,124.559077000722,104.173352617027,143.518258711705,98.0244025196301,88.0547884742399,79.9556649935013,125.018389079241,140.412887473499,94.3519558291748,101.627274397733,100.652960698545,92.6466091993054,212.612172526053,211.740402412886,114.937650458292,131.851870497239,150.495533200296,132.017467210482,153.28998414533,130.83618695507,159.423436775583,144.13688332242,125.805402015553,379.595690400829,220.245959013951,128.1962204936,125.721670330071,159.2836367016,201.524577538014,263.117658958859,185.357293163453,176.103492926901,178.068561186968,187.455870868101,148.675988726015,255.055657215623,194.783573693568,194.992303778844,150.656970595719,157.960220632899,154.640923097278,180.870363382007,170.300951680947,249.675484871777,109.195934862723,278.688830071325,126.894913891677,82.8513384990567,85.6973366478082,202.377961454966,176.563412679672,196.575471237327,150.229675877112,174.501118866746,286.949886309788,130.206651344173,194.251204893465,117.049715838885,88.6325158113834,157.472761696071,196.79783764995,235.915280562648,368.521317335237,148.758874921088,111.001593785423,115.731027404329,193.586149957867,173.42895326848,242.054039084312,201.343249555557,168.859659177157,188.454786175821,98.410109863475,86.2782793482141,79.7760582068772,154.953015982464,139.785453100792,147.755867081345,174.636420020462,160.970770960341,283.970344924664,386.616560297136,140.223982923737,114.983919762335,165.684341059541,129.059420538966,161.825556181882,121.692827714343,187.616830946675,111.042184491406,129.842892401689,143.477897085023,105.63206582171,127.682083726426,123.152178141811,160.060496445167,80.8438631435665,135.242563163744,120.410910314443,114.51007391102,67.5680517502634,135.25865474883,171.379319085216,171.256198233592,140.307379396554,170.193579248681,116.442665727936,108.068703630822,94.3611950448975,126.535203784906,126.466487118752,150.63554797275,68.2507661471802,286.302644163563,267.58823028824,240.354763153316,153.705784178585,254.823457029364,132.267002444545,131.833227641076,125.566746569294,139.742463451943,127.241595349965,125.041616271548,165.033521188041,138.924797308745,128.120803263148,140.987691833308,255.240028322271,271.638847478724,335.179861959036,119.149732732521,117.939266001315,110.477712549423,173.053534970543,133.319467380735,149.607130580314,181.965973207501,240.539751971306,141.7458511004,162.122367472585,337.863212606807,205.907087485357,154.434535967042,151.752900112376,151.692032952682,189.264413014768,185.657190543221,133.748669020923,299.487466826565,306.47955986787,163.241875035944,163.802985597466,156.062720403165,237.146599986546,134.217720430889,120.508832656029,127.083543715342,135.435415347506,233.096668932448,197.557958396273,162.801554490455,115.689088471751,100.883967391873,102.003886208515,121.979454935257,246.000546059531,230.918371003793,254.897944573831,122.467543809658,127.946142641509,120.047101704843,173.803180735309,148.662383472149,133.108988765024,174.516816273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| |||
|short_description=p1@COPE | |||
}} |
Revision as of 22:18, 20 January 2014
Short description: | p1@COPE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_COPE_5end |
Coexpression cluster: | C385_Mesenchymal_Alveolar_Osteoblast_Smooth_Renal_Placental_Fibroblast |
Association with transcript: | 0bp_to_ENST00000262812, ENST00000349893, ENST00000351079, ENST00000538245, NM_007263, NM_199442, NM_199444, uc002nkk.2, uc002nkl.2, uc002nkm.2, uc002nkn.2_5end |
EntrezGene: | COPE |
HGNC: | 2234 |
UniProt: | O14579A6NE29A6NKA3F5H1E1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
somatic stem cell | 7.41e-26 | 433 |
multi fate stem cell | 2.01e-25 | 427 |
stem cell | 3.06e-25 | 441 |
smooth muscle cell | 2.55e-15 | 43 |
smooth muscle myoblast | 2.55e-15 | 43 |
mesodermal cell | 3.70e-15 | 121 |
connective tissue cell | 3.01e-13 | 361 |
vascular associated smooth muscle cell | 8.21e-13 | 32 |
mesenchymal cell | 1.37e-12 | 354 |
muscle precursor cell | 2.53e-12 | 58 |
myoblast | 2.53e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.53e-12 | 58 |
muscle cell | 4.28e-12 | 55 |
embryonic cell | 1.41e-11 | 250 |
motile cell | 2.74e-11 | 386 |
electrically responsive cell | 3.11e-10 | 61 |
electrically active cell | 3.11e-10 | 61 |
myeloid leukocyte | 5.14e-08 | 72 |
defensive cell | 5.51e-08 | 48 |
phagocyte | 5.51e-08 | 48 |
monopoietic cell | 5.63e-08 | 59 |
monocyte | 5.63e-08 | 59 |
monoblast | 5.63e-08 | 59 |
promonocyte | 5.63e-08 | 59 |
macrophage dendritic cell progenitor | 2.43e-07 | 61 |
classical monocyte | 2.91e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.91e-07 | 42 |
myeloid lineage restricted progenitor cell | 8.94e-07 | 66 |