FFCP PHASE1:Hg19::chr7:18535346..18535399,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9734 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14065 | |||
|TSSclassifier=strong | |||
|UniProt=F8W9E0,B7Z4I4,Q9UKV0,B7Z3P7,Q75N16 | |||
|association_with_transcript=0bp_to_ENST00000405010,ENST00000406451,ENST00000428307,ENST00000461409,ENST00000476135,NM_001204145,NM_001204146,NM_014707,NM_178423,uc003sub.3,uc003sud.1,uc003sue.2,uc011jyb.1,uc011jyc.1_5end | |||
|coexpression_cluster_id=C1991 | |||
|description=CAGE_peak_1_at_HDAC9_5end | |||
|id=chr7:18535346..18535399,+ | |||
|ontology_enrichment_celltype=CL:0000945!1.76e-11!24;CL:0000826!1.76e-11!24;CL:0000236!1.32e-10!14;CL:0002319!6.69e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000945;4.76e-13;24!CL:0000236;1.40e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,4.91e-13,24;CL:0000826,4.91e-13,24;CL:0000236,2.93e-12,14 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.20e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.98e-31!115;UBERON:0000073!6.38e-29!94;UBERON:0001016!6.38e-29!94;UBERON:0001017!9.48e-28!82;UBERON:0005743!1.18e-27!86;UBERON:0001049!5.29e-27!57;UBERON:0005068!5.29e-27!57;UBERON:0006241!5.29e-27!57;UBERON:0007135!5.29e-27!57;UBERON:0002780!4.03e-23!41;UBERON:0001890!4.03e-23!41;UBERON:0006240!4.03e-23!41;UBERON:0003080!5.98e-22!42;UBERON:0000955!1.28e-21!69;UBERON:0006238!1.28e-21!69;UBERON:0002616!4.16e-21!59;UBERON:0003075!1.23e-19!86;UBERON:0007284!1.23e-19!86;UBERON:0001893!4.10e-19!34;UBERON:0002020!4.53e-19!34;UBERON:0003528!4.53e-19!34;UBERON:0002791!1.19e-18!33;UBERON:0002346!1.24e-18!90;UBERON:0001869!5.64e-18!32;UBERON:0000956!6.65e-15!25;UBERON:0000203!6.65e-15!25;UBERON:0003056!2.14e-14!61;UBERON:0004121!3.71e-13!169;UBERON:0002619!6.15e-13!22;UBERON:0000924!9.04e-13!173;UBERON:0006601!9.04e-13!173;UBERON:0001950!5.93e-12!20;UBERON:0000153!9.85e-12!129;UBERON:0007811!9.85e-12!129;UBERON:0000033!1.07e-11!123;UBERON:0000025!3.12e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.23e-19;41!UBERON:0001890;1.23e-19;41!UBERON:0003528;2.77e-19;34!UBERON:0002020;2.77e-19;34!UBERON:0002791;2.83e-19;32!UBERON:0001869;3.57e-19;32!UBERON:0001893;3.59e-19;34!UBERON:0000956;2.61e-17;25!UBERON:0000203;2.61e-17;25!UBERON:0000073;3.45e-17;53!UBERON:0002616;3.45e-17;53!UBERON:0002619;5.46e-15;22!UBERON:0001950;8.04e-14;20!UBERON:0001017;5.50e-12;75!UBERON:0001016;1.22e-11;83!UBERON:0000955;1.70e-11;68!UBERON:0007023;3.62e-09;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.44e-33,114;UBERON:0001016,5.49e-32,89;UBERON:0001017,2.09e-31,81;UBERON:0001049,5.37e-31,56;UBERON:0005068,5.37e-31,56;UBERON:0006241,5.37e-31,56;UBERON:0007135,5.37e-31,56;UBERON:0000073,4.49e-29,53;UBERON:0002616,4.49e-29,53;UBERON:0002780,4.42e-27,41;UBERON:0001890,4.42e-27,41;UBERON:0003080,4.42e-27,41;UBERON:0006240,4.42e-27,41;UBERON:0000955,3.38e-24,68;UBERON:0006238,3.38e-24,68;UBERON:0003075,5.94e-23,82;UBERON:0007284,5.94e-23,82;UBERON:0001893,2.48e-22,34;UBERON:0003528,2.79e-22,34;UBERON:0002020,2.79e-22,34;UBERON:0002346,1.04e-21,86;UBERON:0002791,3.63e-21,32;UBERON:0001869,5.53e-21,32;UBERON:0003056,5.23e-18,61;UBERON:0000956,2.40e-17,25;UBERON:0000203,2.40e-17,25;UBERON:0010371,3.74e-16,104;UBERON:0002619,5.09e-15,22;UBERON:0004121,7.00e-15,171;UBERON:0000924,7.00e-15,171;UBERON:0006601,7.00e-15,171;UBERON:0001950,7.44e-14,20;UBERON:0010314,1.32e-13,132;UBERON:0011216,4.09e-10,223;UBERON:0000025,1.17e-07,192 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,14.7911532219391,10.8485015044316,9.49403117503585,7.3189919818576,0.738726348460727,0.408001382488506,0.626909442956176,22.8988789704845,32.8498620174922,37.9138771576304,4.12632391038937,3.44822475689772,4.32909297225236,0,1.15148819429164,0.309632246632152,0,0,0,14.9511697119982,3.55423081218554,0.293600439334847,1.10799081706375,0.802177789880567,1.51907609501096,0.223915474239924,0.647787332037959,0.257575567634187,0,0,0,0.697287110717054,1.6446715520873,1.23882548358041,0.28769239232215,0.512321413058201,1.6553756092201,0.689491361473237,4.51839278508678,2.70852973188684,0.376484679085209,0,0.449446968890169,0.612167784741805,0.641858054152187,0.639337125799041,1.64925650093358,0.199463657621632,0,0.870627715885752,2.8369261234557,6.85104473895132,0,1.0429658368404,0.434377689410233,3.02699751316684,3.68277635987565,4.1140110367315,0,0,0,0,0,0,0,0,0,24.6394742245852,25.6685147293202,35.5803701545422,44.3799431469168,39.6392027165652,23.5648500381338,25.7807500386096,14.3108063180305,29.5990743936913,34.6469941728854,37.4627763562724,1.32171328579026,1.12101712596307,1.58030450865046,0,0.786021525498329,0.205601498999509,0.501559486172034,0.32592226663359,0.473447805734733,0,2.45103005147382,4.12448270464772,5.53834736459053,4.33286182024025,3.33037431286755,1.8208308658383,0,0,0,0,0,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,2.53007406669196,2.00535164254356,0.869079113764942,0,0,14.6528966604305,2.88248216701333,3.16205228495254,2.75056058545197,0,0,0,0,0.132957960518865,0.238490624305342,1.14398982156026,0,0.198762407366705,0,0,0,0,0,0,0,0,0.66944122552934,0.402829317109147,0.760272105718513,0.24406205754817,0.367663080345869,0,0.446498641420399,0,1.0135033243499,0,0,0,0,0,0,0.993943903390637,2.91250176828533,10.9899620074972,1.43418310374407,3.19201543978521,1.12135520028461,1.06748995729705,0.49333509683432,0,0.134710672069688,0.163461903113459,0,0,0,0.312160076830321,0,0.448346041655403,0.117434498643765,0,0,0,0.737005903870608,0,0,1.48360157567134,0,0,0.505008341862199,0.375355559615893,0,0.438977620880838,3.98434134538726,1.50238058906597,0.113432183160021,4.48474089222155,2.13557388818567,0,0.600182192168805,0.309157587715317,8.24449728146013,5.3973888336161,4.38818463827292,5.74878330451072,1.00973509697646,0.552299391853796,0,9.9402685904652,7.85866366175594,2.88253006927829,0,0,0,3.04934265323988,7.28913725768169,3.71820617182459,5.07939169575315,4.54177531576131,9.85438869504741,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0.590789906681404,0,0.122988438543114,0.514703430895577,0,0,0.100528972411631,0.0925884451585296,0,0,0,37.9092424268501,0,6.92958949253154,2.77791307545966,5.70762456703795,0,0,0.984868024349589,10.7641961964049,3.41851673264075,0,0,0,0,0,0,0,0,0.207328115540772,0,0,2.98440103173194,11.8416411923066,2.34434894420094,0,2.98199728839638,0.300343057843917,0,0,0,0,0.904902010304444,0,0,2.6593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,1.00451418286425,2.10833939483032,0,0,0,0.434343920002738,2.4657158706046,1.43248770591916,0,0,0,0,26.6799355433587,16.9181810014908,22.4253755705532,8.87836206272048,24.2416725628202,0,0,0,0,0,0,0.415941723061614,0.535286966391485,0,0,0.601892199455438,0,0,0,0.184369168541703,0.434418072340414,0,1.02943027143257,3.3082884179662,1.94142780736755,1.70764092485511,0,0,0.30239029332968,3.72161711728165,7.67309866440312,1.40330047216537,1.66580894032411,3.58195074346692,1.12597744800525,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,2.23344477602803,0,0,2.11103257785751,0,0,0,0,0.270946437543853,0,0.764628819135115,0.831076008928724,0,0.219259876645935,0,0.769350375349168,0.328014645699706,0.976135183992909,1.23649213977267,2.19766715564024,3.38288949674411,0,0,1.6068392984416,0.386682873168488,0.308097234229289,0.460511024178389,1.65403886981437,0,0.725083469571143,2.72725207731523,9.43739577855416,0,0,0,0,0,0,1.3940745403212,1.84820148105653,0.532306030317022,0.869932992075073,6.4863476686372,2.43312307461385,0,0.316379424718726,0,0,0,0.636406495851874,1.56989728039846,0.179872457583315,0,0.589062011728432,1.41527737101321,0,0.421258456238981,0,6.09283724078211,0,0.136499911407986,0,2.26016233240486,0,11.941901554342,20.6071916069268,0,1.31178950409327,10.3484292250979,4.02770547529675,0.563391205064483,1.57752487424457,0.196498082026242,9.63011838999376,0.709522128141196,1.68886108238131,0.658589785919804,0,0,0,0,0,1.22386941009813,0,0,0,0,4.56702848308952,3.82318603571188,7.40541343326411,4.04994018278241,7.4045209155515,3.8908398671563,2.70015718619057,5.55187623405989,0.747768497892312,0,2.20536194382929,126.71776543574,34.1918034754174,0.0711418433484141,0,0,0,2.11673582723883,0.324621940274555,0.280797178113459,1.36940807419915,0,0,4.06300266723848,2.08764497634809,0.403599414382095,0,0,2.15068535015921,0.894704431569664,0.667396566847634,0,0.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| |||
|short_description=p1@HDAC9 | |||
}} |
Revision as of 15:51, 22 January 2014
Short description: | p1@HDAC9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HDAC9_5end |
Coexpression cluster: | C1991_small_extraskeletal_non_acute_lymphoma_neuroblastoma_pineal |
Association with transcript: | 0bp_to_ENST00000405010, ENST00000406451, ENST00000428307, ENST00000461409, ENST00000476135, NM_001204145, NM_001204146, NM_014707, NM_178423, uc003sub.3, uc003sud.1, uc003sue.2, uc011jyb.1, uc011jyc.1_5end |
EntrezGene: | HDAC9 |
HGNC: | 14065 |
UniProt: | F8W9E0B7Z4I4Q9UKV0B7Z3P7Q75N16 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 4.91e-13 | 24 |
pro-B cell | 4.91e-13 | 24 |
B cell | 2.93e-12 | 14 |