FFCP PHASE1:Hg19::chrX:107682673..107682697,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1288 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2208 | |||
|TSSclassifier=strong | |||
|UniProt=Q14031 | |||
|association_with_transcript=4bp_to_ENST00000372216,ENST00000468338_5end | |||
|description=CAGE_peak_2_at_COL4A6_5end | |||
|id=chrX:107682673..107682697,- | |||
|ontology_enrichment_celltype=CL:0000066!2.30e-19!254;CL:0002076!1.56e-11!43;CL:0000223!6.09e-09!59;CL:0002368!5.91e-08!13;CL:0002251!1.54e-07!21;CL:0002321!2.24e-07!248;CL:0002159!5.11e-07!13;CL:0000220!5.62e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.62e-16;42!CL:0002368;3.86e-14;13!CL:0002251;2.09e-11;20!CL:0002159;3.89e-10;14!CL:0000622;2.20e-09;5!CL:0002202;2.63e-08;9!CL:0002632;2.63e-08;9!CL:0000244;3.44e-08;4!CL:0000731;3.44e-08;4!CL:0000154;1.07e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.00e-20,42;CL:0000066,1.70e-17,253;CL:0002368,3.78e-14,13;CL:0000223,2.00e-12,58;CL:0002251,1.73e-11,20;CL:0002159,3.38e-10,14;CL:0000622,2.52e-09,5;CL:0002202,2.51e-08,9;CL:0002632,2.51e-08,9;CL:0000244,3.48e-08,4;CL:0000731,3.48e-08,4;CL:0000154,1.19e-07,6;CL:0002321,6.91e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.42e-13!169;UBERON:0000925!1.42e-13!169;UBERON:0006595!1.42e-13!169;UBERON:0000922!1.05e-11!612;UBERON:0000481!1.02e-10!347;UBERON:0000467!7.86e-10!625;UBERON:0001007!1.03e-09!155;UBERON:0001555!1.03e-09!155;UBERON:0007026!1.03e-09!155;UBERON:0000468!1.03e-09!659;UBERON:0000480!1.04e-09!626;UBERON:0002050!1.08e-09!605;UBERON:0005423!1.08e-09!605;UBERON:0000923!2.15e-09!604;UBERON:0005291!2.15e-09!604;UBERON:0006598!2.15e-09!604;UBERON:0002532!2.15e-09!604;UBERON:0001004!3.31e-09!72;UBERON:0005157!3.27e-08!51;UBERON:0005911!6.86e-08!82;UBERON:0005156!7.12e-08!59;UBERON:0000990!7.12e-08!59;UBERON:0000483!7.70e-08!309;UBERON:0000119!9.57e-08!312;UBERON:0000062!3.69e-07!511;UBERON:0004921!3.76e-07!129;UBERON:0004185!3.76e-07!129;UBERON:0005153!5.64e-07!37;UBERON:0000477!5.99e-07!286;UBERON:0000077!8.23e-07!130;UBERON:0000161!9.71e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.67e-10;44!UBERON:0000365;1.56e-09;5!UBERON:0000486;2.12e-08;12!UBERON:0001004;5.49e-08;65!UBERON:0005910;8.08e-08;6!UBERON:0005178;2.10e-07;34!UBERON:0002224;2.10e-07;34!UBERON:0000072;2.96e-07;37!UBERON:0005911;3.03e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.05e-15,160;UBERON:0000925,3.05e-15,160;UBERON:0006595,3.05e-15,160;UBERON:0001004,7.26e-14,74;UBERON:0008947,2.85e-10,38;UBERON:0003258,2.85e-10,38;UBERON:0000065,9.25e-10,54;UBERON:0001007,1.13e-09,145;UBERON:0001555,1.13e-09,145;UBERON:0007026,1.13e-09,145;UBERON:0000365,1.44e-09,5;UBERON:0005157,6.64e-09,47;UBERON:0002050,1.20e-08,564;UBERON:0005178,5.52e-08,34;UBERON:0002224,5.52e-08,34;UBERON:0005153,6.89e-08,37;UBERON:0005910,7.58e-08,6;UBERON:0000922,8.63e-08,592;UBERON:0005181,1.22e-07,35;UBERON:0005423,1.36e-07,581;UBERON:0004921,2.03e-07,118;UBERON:0000923,4.43e-07,560;UBERON:0010316,4.43e-07,560;UBERON:0005291,4.43e-07,560;UBERON:0006598,4.43e-07,560;UBERON:0010317,4.43e-07,560;UBERON:0002532,4.43e-07,560;UBERON:0005911,5.15e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.7030733015166,2.09340350391728,5.46103430325431,2.63766978228454,0,0.331397375727916,0,0.602694528023977,0,0,0,0,0,3.43483184557268,1.77936752594749,1.63205431473244,0.305653622991805,0.328402357799783,0.236132343941038,0,0,0.154816123316076,5.51652734687356,4.51808878167375,5.17655614233503,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,1.24430121722827,4.37154345951051,2.96627554227544,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,5.66922267785295,0,0.25326102332916,1.45650098894541,0,1.41867352879343,0,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0.151357427644931,1.15235184896,0,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0.206651562351531,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09217365061275,5.45492241181669,4.01526433544605,0.609868530647977,0.662648841607426,0.813357600086629,2.69518743039963,1.26160425437814,0.36497735907583,0,0,0,0,0,1.0647612003586,1.85443159085912,1.44606617930089,1.10293972732394,1.08939722046203,0.474541238222193,0.539325232640658,1.76599318612811,0,0,0,0,0,0,0,0,0,0.245976877086227,0,12.9505336782178,4.49607013030478,4.52380375852339,6.29601427078001,0.651616610620649,1.03993478527958,0,1.73895607462615,0.117408694235822,0,0,0,0,0,0,0,0,5.62403003920662,4.36753533317035,2.97727704209012,5.1943943167652,6.97521452433509,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2933531432838,0,0,0,0,0,0,0,0,6.86294369559108,0,0,0,5.33087923113819,0.791951872933429,8.44030255766841,7.84380112740265,12.9964888536674,0,0,0,0,0,0,0,0,0,0,0,0,0,3.55732473911449,0,1.54657762555539,0.837581326671744,0,0,0,0,0,0,0,0,0,0.788512075169673,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0,3.63753085735511,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,1.03850885836724,0,0.362578348774867,5.21316822788541,2.20994373446151,0.229628896329213,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,0.509752546090077,0,0,0,0,0,0.328014645699706,0,0,0,0,4.01985876597321,5.20048196829217,0,0,0,0.15350367472613,0,0,0,0.170453254832202,0,12.8922233981563,9.4173133008902,54.1077900977037,3.2370489873776,0,1.88887408098384,0,0,0,0.869932992075073,0.37064843820784,1.28812398067792,0,0,0,0,0.855877976067841,0,0,0,0.54907405947211,1.17812402345686,0.404364963146632,0,0,0,0.974853958525138,4.22600587027022,0.136499911407986,1.97967604735198,0,0.551365343546124,3.98063385144732,0.438450885253763,0,0,0.608731130888112,0,0.281695602532241,0.143411352204052,0,0.7133421029625,0.354761064070598,0,0,0,0,4.42621718537356,3.35151137767894,5.44454924306613,0,13.3456665528081,10.1082885400575,11.0857538384169,8.72948920786446,0,0,0,0,0,0,0,0,0.106824071127473,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,2.14870036263921,0.296964680832639,4.60741053148848,0,0.140669416410513,0.333926115068718,0,0.211125408127993,0.597743964753209,0,0,1.02268682502155,0,0,0.629078458031288,0.537063524026827,0,3.45251919729268,0,1.11136990144637,0,0,0,0.520855522170466,0.962059999958153,0.724999575434793,0.455173793141999,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0.139423744278603,3.15496059865568,0,0.23056390438806,0,0,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,1.69623685720729,0,0,0.0884575645033392,0.611030144933625,1.77912677208373,0.123563938946503,0.313265848516366,0.471807930864739,0,0.234264445725339,0,0.586993856796269,0,0.789168805698781,1.20990716048664,0.91821828489147,0.063186579628488,0.751617097072463,0.103688191397247,0,0.330991955875499,0,0,0,0,0,0.0979923974143777,2.87295381715328,3.31980669659857,0,7.1599685153923,6.0664133181534,7.80096842005488,8.82600050044617,0,0.451961481561065,0,0,0.0633107959558787,0.782205530939212,0.0801588202515337,7.47085481587734,0,0,2.1761953271524,0,1.1524383839052,0.124252535565433,3.77110455386873,0,0,0,0,0,0,0,0,0,3.90995361781156,0.229160424011684,0,0.399358000997982,0.429226048136571,0.223171457441873,1.14211903227435,0,0,0.787831823072237,0.247247575143499,0.606631894687664,0.295282444544246,0,0,0,0.160753148465019,0.687697182986169,0,0,0,0,0,0.394028536495991,0.629455057619977,0,12.5501137532991,1.53532157855556,2.1440859791201,0,0,2.71499800876856,16.4202083328241,8.16468400273523,0,0,0.340776043570843,0,0,0,0.258565912723101,0.13223260174269,0,1.40963004463334,0.320362237703084,1.88645166119599,1.24271716604159,0,0,0,3.19170628885091,0,0,0,0,0.942324577501406,0,0,0,0,0.110929051536852,0.372578417648301,0,1.99968652739371,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0,0.155262956876259,9.12353657249882,0.797525143673985,0,0.300515217994437,4.95046775819434,0.406870733204662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| |||
|short_description=p2@COL4A6 | |||
}} |
Revision as of 06:33, 23 January 2014
Short description: | p2@COL4A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL4A6_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_ENST00000372216, ENST00000468338_5end |
EntrezGene: | COL4A6 |
HGNC: | 2208 |
UniProt: | Q14031 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.00e-20 | 42 |
epithelial cell | 1.70e-17 | 253 |
respiratory epithelial cell | 3.78e-14 | 13 |
endodermal cell | 2.00e-12 | 58 |
epithelial cell of alimentary canal | 1.73e-11 | 20 |
general ecto-epithelial cell | 3.38e-10 | 14 |
acinar cell | 2.52e-09 | 5 |
epithelial cell of tracheobronchial tree | 2.51e-08 | 9 |
epithelial cell of lower respiratory tract | 2.51e-08 | 9 |
transitional epithelial cell | 3.48e-08 | 4 |
urothelial cell | 3.48e-08 | 4 |
protein secreting cell | 1.19e-07 | 6 |
embryonic cell | 6.91e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.05e-15 | 160 |
endoderm | 3.05e-15 | 160 |
presumptive endoderm | 3.05e-15 | 160 |
respiratory system | 7.26e-14 | 74 |
respiratory primordium | 2.85e-10 | 38 |
endoderm of foregut | 2.85e-10 | 38 |
respiratory tract | 9.25e-10 | 54 |
digestive system | 1.13e-09 | 145 |
digestive tract | 1.13e-09 | 145 |
primitive gut | 1.13e-09 | 145 |
urothelium | 1.44e-09 | 5 |
epithelial fold | 6.64e-09 | 47 |
embryonic structure | 1.20e-08 | 564 |
thoracic cavity element | 5.52e-08 | 34 |
thoracic cavity | 5.52e-08 | 34 |
epithelial bud | 6.89e-08 | 37 |
transitional epithelium | 7.58e-08 | 6 |
embryo | 8.63e-08 | 592 |
thoracic segment organ | 1.22e-07 | 35 |
developing anatomical structure | 1.36e-07 | 581 |
subdivision of digestive tract | 2.03e-07 | 118 |
germ layer | 4.43e-07 | 560 |
germ layer / neural crest | 4.43e-07 | 560 |
embryonic tissue | 4.43e-07 | 560 |
presumptive structure | 4.43e-07 | 560 |
germ layer / neural crest derived structure | 4.43e-07 | 560 |
epiblast (generic) | 4.43e-07 | 560 |
endo-epithelium | 5.15e-07 | 82 |