FFCP PHASE1:Hg19::chr10:90342724..90342749,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:90342724..90342749,+ | |||
|description=CAGE_peak_at_chr10:90342724..90342749,+ | |description=CAGE_peak_at_chr10:90342724..90342749,+ | ||
|id=chr10:90342724..90342749,+ | |id=chr10:90342724..90342749,+ | ||
|ontology_enrichment_celltype=CL:0000738!9.30e-09!140;CL:0000037!7.44e-08!172;CL:0000566!7.44e-08!172;CL:0000791!9.36e-08!18;CL:0000789!9.36e-08!18;CL:0002420!9.36e-08!18;CL:0002419!9.36e-08!18;CL:0000790!9.36e-08!18;CL:0000542!1.23e-07!53;CL:0000051!1.23e-07!53;CL:0000838!3.03e-07!52;CL:0002087!5.97e-07!119;CL:0002031!7.56e-07!124;CL:0002032!9.63e-07!165;CL:0000837!9.63e-07!165 | |ontology_enrichment_celltype=CL:0000738!9.30e-09!140;CL:0000037!7.44e-08!172;CL:0000566!7.44e-08!172;CL:0000791!9.36e-08!18;CL:0000789!9.36e-08!18;CL:0002420!9.36e-08!18;CL:0002419!9.36e-08!18;CL:0000790!9.36e-08!18;CL:0000542!1.23e-07!53;CL:0000051!1.23e-07!53;CL:0000838!3.03e-07!52;CL:0002087!5.97e-07!119;CL:0002031!7.56e-07!124;CL:0002032!9.63e-07!165;CL:0000837!9.63e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000624;1.57e-13;6!CL:0000791;1.89e-13;18!CL:0000789;1.89e-13;18!CL:0002419;1.89e-13;18!CL:0000542;3.91e-12;53!CL:0000084;1.17e-10;25!CL:0000236;4.59e-08;13!CL:0000898;2.17e-07;3!CL:0000623;2.17e-07;3!CL:0000784;5.50e-07;3 | |ontology_enrichment_celltype_v019=CL:0000624;1.57e-13;6!CL:0000791;1.89e-13;18!CL:0000789;1.89e-13;18!CL:0002419;1.89e-13;18!CL:0000542;3.91e-12;53!CL:0000084;1.17e-10;25!CL:0000236;4.59e-08;13!CL:0000898;2.17e-07;3!CL:0000623;2.17e-07;3!CL:0000784;5.50e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.07e-20,53;CL:0000051,3.07e-20,53;CL:0000838,4.67e-19,52;CL:0000738,4.81e-15,136;CL:0000037,1.30e-13,168;CL:0000791,2.73e-13,18;CL:0000789,2.73e-13,18;CL:0002420,2.73e-13,18;CL:0002419,2.73e-13,18;CL:0000790,2.73e-13,18;CL:0000624,3.33e-13,6;CL:0002031,3.66e-13,120;CL:0000988,2.40e-12,177;CL:0002032,4.58e-12,161;CL:0000837,4.58e-12,161;CL:0002087,3.60e-11,115;CL:0000084,1.98e-10,25;CL:0000827,1.98e-10,25;CL:0000236,1.35e-09,14;CL:0000623,5.58e-08,3;CL:0000825,5.58e-08,3;CL:0000898,2.35e-07,3;CL:0000784,7.34e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.89e-13;18!CL:0000051;3.91e-12;53 | |ontology_enrichment_development_v019=CL:0000790;1.89e-13;18!CL:0000051;3.91e-12;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.33e-13!57;UBERON:0005068!8.33e-13!57;UBERON:0006241!8.33e-13!57;UBERON:0007135!8.33e-13!57;UBERON:0002780!2.64e-12!41;UBERON:0001890!2.64e-12!41;UBERON:0006240!2.64e-12!41;UBERON:0002020!4.42e-12!34;UBERON:0003528!4.42e-12!34;UBERON:0001893!6.80e-12!34;UBERON:0001869!1.16e-11!32;UBERON:0003080!1.25e-11!42;UBERON:0002791!1.57e-11!33;UBERON:0002619!1.84e-11!22;UBERON:0000956!2.52e-11!25;UBERON:0000203!2.52e-11!25;UBERON:0002616!3.56e-11!59;UBERON:0001950!6.91e-11!20;UBERON:0001017!7.48e-11!82;UBERON:0005743!7.92e-10!86;UBERON:0007023!2.18e-09!115;UBERON:0000955!4.79e-09!69;UBERON:0006238!4.79e-09!69;UBERON:0003056!7.55e-08!61;UBERON:0003075!8.69e-08!86;UBERON:0007284!8.69e-08!86;UBERON:0000073!2.90e-07!94;UBERON:0001016!2.90e-07!94;UBERON:0002346!6.55e-07!90 | |ontology_enrichment_uberon=UBERON:0001049!8.33e-13!57;UBERON:0005068!8.33e-13!57;UBERON:0006241!8.33e-13!57;UBERON:0007135!8.33e-13!57;UBERON:0002780!2.64e-12!41;UBERON:0001890!2.64e-12!41;UBERON:0006240!2.64e-12!41;UBERON:0002020!4.42e-12!34;UBERON:0003528!4.42e-12!34;UBERON:0001893!6.80e-12!34;UBERON:0001869!1.16e-11!32;UBERON:0003080!1.25e-11!42;UBERON:0002791!1.57e-11!33;UBERON:0002619!1.84e-11!22;UBERON:0000956!2.52e-11!25;UBERON:0000203!2.52e-11!25;UBERON:0002616!3.56e-11!59;UBERON:0001950!6.91e-11!20;UBERON:0001017!7.48e-11!82;UBERON:0005743!7.92e-10!86;UBERON:0007023!2.18e-09!115;UBERON:0000955!4.79e-09!69;UBERON:0006238!4.79e-09!69;UBERON:0003056!7.55e-08!61;UBERON:0003075!8.69e-08!86;UBERON:0007284!8.69e-08!86;UBERON:0000073!2.90e-07!94;UBERON:0001016!2.90e-07!94;UBERON:0002346!6.55e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.18e-12;20!UBERON:0002619;2.67e-11;22!UBERON:0000956;1.15e-09;25!UBERON:0000203;1.15e-09;25!UBERON:0002791;9.54e-09;32!UBERON:0001869;9.57e-09;32!UBERON:0001893;2.26e-08;34!UBERON:0003528;4.01e-08;34!UBERON:0002020;4.01e-08;34!UBERON:0002021;7.37e-08;5 | |ontology_enrichment_uberon_v019=UBERON:0001950;1.18e-12;20!UBERON:0002619;2.67e-11;22!UBERON:0000956;1.15e-09;25!UBERON:0000203;1.15e-09;25!UBERON:0002791;9.54e-09;32!UBERON:0001869;9.57e-09;32!UBERON:0001893;2.26e-08;34!UBERON:0003528;4.01e-08;34!UBERON:0002020;4.01e-08;34!UBERON:0002021;7.37e-08;5 | ||
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|phase1_expression=0.726713517082227,0.856402095563933,0.986680828671798,0,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,0,0,0,0,0.492484232307152,0,0,0.572471974262113,0.136874425072884,0.376627918784408,0.0764134057479513,0.410502947249729,0.0787107813136792,0.786728553697808,1.91914699048606,0.464448369948228,0,0,0,0,0,2.34880351467878,0.553995408531877,1.60435557976113,1.30206522429511,0,0.647787332037959,0,0,0,0.242584061187816,0,1.23350366406548,0.619412741790207,0,0.256160706529101,0.236482229888585,0.689491361473237,0,2.70852973188684,0.188242339542605,0.272906150057846,0,0,0.320929027076094,0,0.659702600373432,0.199463657621632,0,0,0.56738522469114,0,0.502497330513487,0,0,0.605399502633369,0,0.632924774881769,0.633765858935825,0.637812899895131,0.838634582033504,0.22465726229299,0,0.32145117339416,1.14005097496499,0.79566670879636,0.547992461293902,0,1.09227722252426,0,3.41384178053206,3.2031678962881,1.72425731986345,0.661044872784862,0,1.70763890732835,3.52342313622563,3.05818582500183,1.32171328579026,0,1.05353633910031,2.360517241366,2.75107533924415,1.02800749499755,0,2.60737813306872,3.78758244587787,0,0.222820913770347,1.47302953737419,1.77227115666897,1.89562704635511,0,0.130059347559878,0.164437904603676,0.829050053357545,0,1.18629250529648,1.87278579662799,2.09071047609954,0.566546713487831,1.14966148080576,1.03088233644789,0.759059076058509,0.637130828648193,0,0,0.903450714466637,1.53583933385302,1.24930726552346,0.473554504088034,0.821127996921047,3.62892137804518,3.20928234940209,2.02754165435919,0,0.670700859703636,0.12786256184353,0,0,0.434539556882471,0,0,0.472674085820339,0.443458794925128,0.351339142772504,0.589405839739707,0,0.370784442784429,0,0,0,1.66943437013739,1.14398982156026,1.11437250398869,0,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,0.496971951695318,0,0,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0,0.163461903113459,0,0,0.234321431833797,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0.309977343527296,1.18800285728205,0,0,0.718618141816238,0.505008341862199,0,1.10825646193673,0.438977620880838,0,0.45071417671979,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0,0.257640540045629,0,0.168776332241266,0.194874010322397,1.26216887122057,0,0,0.355009592516614,0.201504196455281,0.169560592310488,0.57978255948989,0.272746120590835,0.286804595389004,0,0.265059536642971,0,0.207322110030741,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,2.53510069643662,0,0,0,0.983907508344908,0,0.219500570817251,0,0.201057944823262,0.185176890317059,0,0,0,0.463721619900307,0.352226082707465,0,0,0,0,0,0.492434012174795,0.234004265139238,0.297262324577456,0.93733833986777,0.335964256397719,0,0.179117045405697,0.290633938513962,0,0,0.088048434013226,1.24396869324463,1.29707958075265,1.00993946741104,0,0,0,1.71072446022705,0.205654985406647,0,0,0.112131084345361,0,0.1466765716419,0.258543431515556,0,0,0.531876233169741,0,0.257207374262142,0,0,0.57191197463259,0,0,0.65147236858747,0,0,0.301439377059586,0,0,0,1.50677127429638,0,0,0,0,0.289562613335158,0,1.07436577943937,0.336255431980582,2.75843064282698,1.94064817373566,1.66845947163673,1.27047312111232,0,0,1.67516265334349,1.91381625495949,0,0,1.24324654030811,0,0.500170521059677,0,0.207970861530807,0.178428988797162,0,0.35142424497814,0,0,1.03473071292505,0,0.368738337083406,0,0.195801157462741,0.686286847621712,0.413536052245775,0.431428401637234,0.960548020230999,0,0,0.30239029332968,0,0.153461973288062,0.561320188866147,0.896974044789907,0,0.160853921143607,0,0.462629081407967,1.06537035187876,0.492762936082855,0,0.581051892299796,0.725156697549733,0,0.368323955743585,0.114814448164607,0.182091168006717,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.647747748306418,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.515205058238611,0.640986253728404,0,0,0,0,0,0.770243085573222,0.15350367472613,0,0,0.145016693914229,0.170453254832202,0.178064071293475,0.165284915360978,0.384380134730212,0.255225424989168,0.4046311234222,0,0,0,0,0,0,0,0,0,0.316379424718726,0.38126038784765,0.255897791311334,0,0,0,0,0,0.235624804691373,0.202182481573316,0,0,0,0.243713489631284,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0.211107635297664,0,0.379473173765715,0.699869440489966,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,0,0,0.569647187174163,0.476463550915578,1.23408681925858,1.29694662238543,0,0.79312517629427,0,0,0.980160863924127,1.11481905075431,0,1.06712765022621,0,0,0.5745161103971,0.846694330895531,0.324621940274555,1.12318871245384,0,0,0,0,0.481764225311099,0.403599414382095,0.425846237690326,0.687010689511529,0.614481528616916,0.223676107892416,0.834245708559542,0.781552381608161,0.278406173895242,0,0,0,2.81974010175699,0,0,0,0,0,0.23874448473769,0,0.307160702099232,1.9882952955326,0.703347082052564,0,0,0,0.19924798825107,0,0,0.102268682502155,0.246169610922139,0.311039587661807,0.1797367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| ||
|short_description=p@chr10:90342724..90342749,+ | |short_description=p@chr10:90342724..90342749,+ | ||
}} | }} |
Latest revision as of 16:27, 23 July 2015
Short description: | p@chr10:90342724..90342749, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:90342724..90342749, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.07e-20 | 53 |
common lymphoid progenitor | 3.07e-20 | 53 |
lymphoid lineage restricted progenitor cell | 4.67e-19 | 52 |
leukocyte | 4.81e-15 | 136 |
hematopoietic stem cell | 1.30e-13 | 168 |
mature alpha-beta T cell | 2.73e-13 | 18 |
alpha-beta T cell | 2.73e-13 | 18 |
immature T cell | 2.73e-13 | 18 |
mature T cell | 2.73e-13 | 18 |
immature alpha-beta T cell | 2.73e-13 | 18 |
CD4-positive, alpha-beta T cell | 3.33e-13 | 6 |
hematopoietic lineage restricted progenitor cell | 3.66e-13 | 120 |
hematopoietic cell | 2.40e-12 | 177 |
hematopoietic oligopotent progenitor cell | 4.58e-12 | 161 |
hematopoietic multipotent progenitor cell | 4.58e-12 | 161 |
nongranular leukocyte | 3.60e-11 | 115 |
T cell | 1.98e-10 | 25 |
pro-T cell | 1.98e-10 | 25 |
B cell | 1.35e-09 | 14 |
natural killer cell | 5.58e-08 | 3 |
pro-NK cell | 5.58e-08 | 3 |
naive T cell | 2.35e-07 | 3 |
plasmacytoid dendritic cell | 7.34e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neocortex | 3.05e-13 | 20 |
regional part of cerebral cortex | 7.90e-12 | 22 |
regional part of telencephalon | 3.70e-10 | 32 |
cerebral hemisphere | 3.70e-10 | 32 |
cerebral cortex | 4.01e-10 | 25 |
pallium | 4.01e-10 | 25 |
brain grey matter | 2.22e-09 | 34 |
gray matter | 2.22e-09 | 34 |
telencephalon | 2.22e-09 | 34 |
regional part of forebrain | 2.12e-08 | 41 |
forebrain | 2.12e-08 | 41 |
anterior neural tube | 2.12e-08 | 41 |
future forebrain | 2.12e-08 | 41 |
occipital lobe | 5.32e-08 | 5 |
regional part of nervous system | 1.04e-07 | 53 |
regional part of brain | 1.04e-07 | 53 |
neural tube | 4.29e-07 | 56 |
neural rod | 4.29e-07 | 56 |
future spinal cord | 4.29e-07 | 56 |
neural keel | 4.29e-07 | 56 |