FFCP PHASE1:Hg19::chr12:53694132..53694153,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:53694132..53694153,-
|short_description=p1@ENST00000550263
|description=CAGE_peak_1_at_ENST00000550263_5end
|association_with_transcript=-34bp_to_ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-34bp_to_ENST00000550263_5end | |||
|cluster_id=chr12:53694132..53694153,- | |||
|description=CAGE_peak_1_at_ENST00000550263_5end | |||
|id=chr12:53694132..53694153,- | |||
|ontology_enrichment_celltype=CL:0000144!3.22e-33!625;CL:0002371!1.06e-30!591;CL:0000055!8.24e-29!180;CL:0000548!4.29e-27!679;CL:0000004!4.29e-27!679;CL:0000255!4.29e-27!679;CL:0000012!1.78e-26!682;CL:0000222!2.39e-23!119;CL:0000048!1.44e-21!430;CL:0000723!8.60e-21!436;CL:0000680!3.09e-20!57;CL:0000056!3.09e-20!57;CL:0000355!3.09e-20!57;CL:0000034!4.79e-20!444;CL:0000003!7.46e-20!722;CL:0000183!4.65e-19!59;CL:0000187!5.28e-19!54;CL:0000192!9.00e-19!42;CL:0000514!9.00e-19!42;CL:0000359!7.02e-17!32;CL:0000393!1.96e-16!60;CL:0000211!1.96e-16!60;CL:0000057!4.02e-13!75;CL:0000220!6.52e-13!246;CL:0002321!8.65e-13!248;CL:0002320!2.64e-08!365;CL:0000063!3.77e-08!578;CL:0002194!6.55e-08!63;CL:0000576!6.55e-08!63;CL:0000040!6.55e-08!63;CL:0000559!6.55e-08!63;CL:0000134!1.35e-07!358;CL:0002009!4.07e-07!65;CL:0002057!4.97e-07!42;CL:0000860!5.23e-07!45;CL:0002334!6.59e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.44e-18;32!CL:0000192;1.76e-14;43!CL:0000187;1.53e-11;55!CL:0000393;4.00e-09;61!CL:0000211;4.00e-09;61!CL:0000134;5.24e-08;55!CL:0000473;6.65e-08;39!CL:0000234;6.65e-08;39!CL:0000860;9.44e-08;33!CL:0002057;9.44e-08;33!CL:0002334;1.11e-07;12!CL:0002539;1.89e-07;10!CL:0002494;3.93e-07;16!CL:0000048;6.82e-07;58!CL:0000723;8.93e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.44e-27,427;CL:0000723,1.09e-26,433;CL:0000034,8.72e-25,441;CL:0000222,9.26e-24,121;CL:0000680,1.48e-22,58;CL:0000056,1.48e-22,58;CL:0000355,1.48e-22,58;CL:0000187,3.84e-21,55;CL:0000192,2.17e-20,43;CL:0000514,2.17e-20,43;CL:0000359,3.30e-19,32;CL:0000393,3.12e-18,61;CL:0000211,3.12e-18,61;CL:0000057,4.99e-13,76;CL:0002321,2.28e-11,250;CL:0002320,4.23e-11,361;CL:0000134,2.44e-10,354;CL:0000473,1.81e-08,48;CL:0000234,1.81e-08,48;CL:0002334,1.01e-07,12;CL:0000219,1.21e-07,386;CL:0002539,1.83e-07,10;CL:0002194,2.86e-07,59;CL:0000576,2.86e-07,59;CL:0000040,2.86e-07,59;CL:0000559,2.86e-07,59;CL:0002494,4.95e-07,16;CL:0000860,9.86e-07,42;CL:0002057,9.86e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000514;1.76e-14;43!CL:0000355;1.52e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.73e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.93e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!7.68e-25!167;UBERON:0000914!4.41e-22!83;UBERON:0002329!4.41e-22!83;UBERON:0003077!4.41e-22!83;UBERON:0003059!4.41e-22!83;UBERON:0007282!4.41e-22!83;UBERON:0009618!4.41e-22!83;UBERON:0007285!4.41e-22!83;UBERON:0000486!1.42e-20!82;UBERON:0004290!2.91e-20!70;UBERON:0000926!1.38e-18!448;UBERON:0004120!1.38e-18!448;UBERON:0006603!1.38e-18!448;UBERON:0001134!2.83e-18!61;UBERON:0002036!2.83e-18!61;UBERON:0003082!2.83e-18!61;UBERON:0001637!2.47e-17!42;UBERON:0003509!2.47e-17!42;UBERON:0004572!2.47e-17!42;UBERON:0002385!1.16e-16!63;UBERON:0001015!1.16e-16!63;UBERON:0000383!1.16e-16!63;UBERON:0003081!1.23e-15!216;UBERON:0002049!2.82e-15!79;UBERON:0007798!2.82e-15!79;UBERON:0000055!3.51e-15!69;UBERON:0001981!2.69e-14!60;UBERON:0007500!2.69e-14!60;UBERON:0004537!2.69e-14!60;UBERON:0006965!2.69e-14!60;UBERON:0004872!3.27e-14!84;UBERON:0004535!4.14e-14!110;UBERON:0004573!5.99e-14!33;UBERON:0004571!5.99e-14!33;UBERON:0005256!4.52e-13!143;UBERON:0001009!5.40e-13!113;UBERON:0000490!2.75e-11!138;UBERON:0000468!1.26e-09!659;UBERON:0003914!1.62e-09!118;UBERON:0000467!1.21e-08!625;UBERON:0000480!1.31e-08!626;UBERON:0002100!1.54e-08!216;UBERON:0004765!1.85e-08!101;UBERON:0001434!1.85e-08!101;UBERON:0002384!7.28e-08!375;UBERON:0001013!7.32e-08!14;UBERON:0000923!2.72e-07!604;UBERON:0005291!2.72e-07!604;UBERON:0006598!2.72e-07!604;UBERON:0002532!2.72e-07!604;UBERON:0000947!3.12e-07!21;UBERON:0010191!3.12e-07!21;UBERON:0002050!3.14e-07!605;UBERON:0005423!3.14e-07!605;UBERON:0000922!4.21e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.08e-14;33!UBERON:0004571;2.08e-14;33!UBERON:0001637;8.94e-14;42!UBERON:0003509;8.94e-14;42!UBERON:0004572;8.94e-14;42!UBERON:0007500;1.97e-10;56!UBERON:0001981;1.97e-10;56!UBERON:0004537;1.97e-10;56!UBERON:0001013;6.22e-09;14!UBERON:0000055;1.67e-08;65!UBERON:0000947;4.04e-08;21!UBERON:0010191;4.04e-08;21!UBERON:0002049;1.47e-07;75!UBERON:0007798;1.47e-07;75!UBERON:0004237;1.89e-07;10!UBERON:0004695;1.89e-07;10!UBERON:0002111;1.89e-07;10!UBERON:0004178;1.89e-07;10 | |||
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|short_description=p1@ENST00000550263 | |||
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Latest revision as of 09:50, 24 July 2015
Short description: | p1@ENST00000550263 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000550263_5end |
Coexpression cluster: | NA |
Association with transcript: | -34bp_to_ENST00000550263_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.44e-27 | 427 |
somatic stem cell | 1.09e-26 | 433 |
stem cell | 8.72e-25 | 441 |
mesodermal cell | 9.26e-24 | 121 |
muscle precursor cell | 1.48e-22 | 58 |
myoblast | 1.48e-22 | 58 |
multi-potent skeletal muscle stem cell | 1.48e-22 | 58 |
muscle cell | 3.84e-21 | 55 |
smooth muscle cell | 2.17e-20 | 43 |
smooth muscle myoblast | 2.17e-20 | 43 |
vascular associated smooth muscle cell | 3.30e-19 | 32 |
electrically responsive cell | 3.12e-18 | 61 |
electrically active cell | 3.12e-18 | 61 |
fibroblast | 4.99e-13 | 76 |
embryonic cell | 2.28e-11 | 250 |
connective tissue cell | 4.23e-11 | 361 |
mesenchymal cell | 2.44e-10 | 354 |
defensive cell | 1.81e-08 | 48 |
phagocyte | 1.81e-08 | 48 |
preadipocyte | 1.01e-07 | 12 |
motile cell | 1.21e-07 | 386 |
aortic smooth muscle cell | 1.83e-07 | 10 |
monopoietic cell | 2.86e-07 | 59 |
monocyte | 2.86e-07 | 59 |
monoblast | 2.86e-07 | 59 |
promonocyte | 2.86e-07 | 59 |
cardiocyte | 4.95e-07 | 16 |
classical monocyte | 9.86e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.86e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.93e-07 | 14 |