FFCP PHASE1:Hg19::chr14:29254914..29254931,-: Difference between revisions
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|id=chr14:29254914..29254931,-
|short_description=p1@uc001wqg.1
|description=CAGE_peak_1_at_uc001wqg.1_5end
|association_with_transcript=58bp_to_uc001wqg.1_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=58bp_to_uc001wqg.1_5end | |||
|cluster_id=chr14:29254914..29254931,- | |||
|description=CAGE_peak_1_at_uc001wqg.1_5end | |||
|id=chr14:29254914..29254931,- | |||
|ontology_enrichment_celltype=CL:0002319!3.79e-24!25;CL:0000243!5.03e-22!15;CL:0000125!5.03e-22!15;CL:0000030!5.03e-22!15;CL:0000339!5.03e-22!15;CL:0000095!2.11e-19!17;CL:0000123!2.11e-19!17;CL:0000133!2.35e-12!59;CL:0002605!6.89e-10!3;CL:0000221!1.49e-09!71;CL:0000333!2.30e-08!41;CL:0000128!5.72e-07!7;CL:0000126!5.72e-07!7;CL:0000127!5.72e-07!7;CL:0002453!5.72e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.15e-19;3!CL:0002319;1.21e-18;25!CL:0000243;1.21e-13;15!CL:0000125;1.21e-13;15!CL:0000095;3.06e-12;17!CL:0000128;5.59e-09;7!CL:0000126;5.59e-09;7!CL:0000127;5.59e-09;7!CL:0000047;2.40e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.39e-19,3;CL:0002319,1.48e-18,25;CL:0000243,1.35e-13,15;CL:0000125,1.35e-13,15;CL:0000030,1.35e-13,15;CL:0000339,1.35e-13,15;CL:0000095,3.39e-12,17;CL:0000123,3.39e-12,17;CL:0000128,6.06e-09,7;CL:0000126,6.06e-09,7;CL:0000127,6.06e-09,7;CL:0002453,6.06e-09,7;CL:0000133,4.54e-08,59;CL:0000047,5.18e-08,8 | |||
|ontology_enrichment_development_v019=CL:0000339;1.21e-13;15 | |||
|ontology_enrichment_disease=DOID:3093!9.45e-11!11 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.25e-19,25;UBERON:0000203,2.25e-19,25;UBERON:0001017,4.61e-16,81;UBERON:0002791,3.19e-15,32;UBERON:0001869,3.19e-15,32;UBERON:0001016,2.15e-14,89;UBERON:0003528,2.43e-14,34;UBERON:0002020,2.43e-14,34;UBERON:0001893,2.43e-14,34;UBERON:0002021,2.67e-12,5;UBERON:0000955,2.72e-12,68;UBERON:0006238,2.72e-12,68;UBERON:0002780,6.55e-12,41;UBERON:0001890,6.55e-12,41;UBERON:0003080,6.55e-12,41;UBERON:0006240,6.55e-12,41;UBERON:0001950,3.36e-11,20;UBERON:0002619,3.00e-10,22;UBERON:0000073,3.35e-09,53;UBERON:0002616,3.35e-09,53;UBERON:0001049,1.06e-08,56;UBERON:0005068,1.06e-08,56;UBERON:0006241,1.06e-08,56;UBERON:0007135,1.06e-08,56;UBERON:0002702,1.50e-08,2;UBERON:0003056,5.66e-08,61;UBERON:0011216,9.68e-08,223;UBERON:0004121,4.31e-07,171;UBERON:0000924,4.31e-07,171;UBERON:0006601,4.31e-07,171 | |||
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| ||
|short_description=p1@uc001wqg.1 | |||
}} | }} |
Latest revision as of 20:04, 24 July 2015
Short description: | p1@uc001wqg.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001wqg.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 58bp_to_uc001wqg.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.39e-19 | 3 |
neural cell | 1.48e-18 | 25 |
glial cell (sensu Vertebrata) | 1.35e-13 | 15 |
glial cell | 1.35e-13 | 15 |
glioblast | 1.35e-13 | 15 |
glioblast (sensu Vertebrata) | 1.35e-13 | 15 |
neuron associated cell | 3.39e-12 | 17 |
neuron associated cell (sensu Vertebrata) | 3.39e-12 | 17 |
oligodendrocyte | 6.06e-09 | 7 |
macroglial cell | 6.06e-09 | 7 |
astrocyte | 6.06e-09 | 7 |
oligodendrocyte precursor cell | 6.06e-09 | 7 |
neurectodermal cell | 4.54e-08 | 59 |
neuronal stem cell | 5.18e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.25e-19 | 25 |
pallium | 2.25e-19 | 25 |
central nervous system | 4.61e-16 | 81 |
regional part of telencephalon | 3.19e-15 | 32 |
cerebral hemisphere | 3.19e-15 | 32 |
nervous system | 2.15e-14 | 89 |
brain grey matter | 2.43e-14 | 34 |
gray matter | 2.43e-14 | 34 |
telencephalon | 2.43e-14 | 34 |
occipital lobe | 2.67e-12 | 5 |
brain | 2.72e-12 | 68 |
future brain | 2.72e-12 | 68 |
regional part of forebrain | 6.55e-12 | 41 |
forebrain | 6.55e-12 | 41 |
anterior neural tube | 6.55e-12 | 41 |
future forebrain | 6.55e-12 | 41 |
neocortex | 3.36e-11 | 20 |
regional part of cerebral cortex | 3.00e-10 | 22 |
regional part of nervous system | 3.35e-09 | 53 |
regional part of brain | 3.35e-09 | 53 |
neural tube | 1.06e-08 | 56 |
neural rod | 1.06e-08 | 56 |
future spinal cord | 1.06e-08 | 56 |
neural keel | 1.06e-08 | 56 |
middle frontal gyrus | 1.50e-08 | 2 |
pre-chordal neural plate | 5.66e-08 | 61 |
organ system subdivision | 9.68e-08 | 223 |
ectoderm-derived structure | 4.31e-07 | 171 |
ectoderm | 4.31e-07 | 171 |
presumptive ectoderm | 4.31e-07 | 171 |