FFCP PHASE1:Hg19::chr4:3344392..3344399,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr4:3344392..3344399,+ | |||
|coexpression_cluster_id=C97 | |||
|description=CAGE_peak_at_chr4:3344392..3344399,+ | |||
|id=chr4:3344392..3344399,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002553;2.42e-50;1!CL:0000082;1.55e-11;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,2.42e-50,1;CL:0000082,1.55e-11,19 | |||
|ontology_enrichment_development_v019=UBERON:0007297;8.10e-26;2!UBERON:0008947;6.44e-08;29!UBERON:0001041;1.10e-07;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1324;2.57e-14;15!DOID:5409;8.82e-14;4!DOID:0050615;1.72e-13;16!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:1324,2.58e-14,15;DOID:5409,8.82e-14,4;DOID:0050615,1.72e-13,16;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:3905,7.48e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0002780!3.73e-35!41;UBERON:0001890!3.73e-35!41;UBERON:0006240!3.73e-35!41;UBERON:0003080!3.12e-34!42;UBERON:0001893!7.40e-34!34;UBERON:0001869!6.84e-32!32;UBERON:0002619!3.47e-31!22;UBERON:0002791!9.20e-31!33;UBERON:0001049!4.70e-30!57;UBERON:0005068!4.70e-30!57;UBERON:0006241!4.70e-30!57;UBERON:0007135!4.70e-30!57;UBERON:0002020!8.87e-30!34;UBERON:0003528!8.87e-30!34;UBERON:0001950!2.49e-29!20;UBERON:0002616!8.45e-29!59;UBERON:0000956!2.93e-27!25;UBERON:0000203!2.93e-27!25;UBERON:0000955!4.02e-26!69;UBERON:0006238!4.02e-26!69;UBERON:0001017!8.30e-26!82;UBERON:0005743!2.22e-24!86;UBERON:0002346!2.37e-23!90;UBERON:0003056!2.27e-22!61;UBERON:0000073!1.34e-21!94;UBERON:0001016!1.34e-21!94;UBERON:0003075!2.49e-20!86;UBERON:0007284!2.49e-20!86;UBERON:0007023!1.23e-15!115;UBERON:0000033!1.57e-15!123;UBERON:0001872!3.21e-15!5;UBERON:0000153!1.44e-14!129;UBERON:0007811!1.44e-14!129;UBERON:0000025!1.55e-13!194;UBERON:0000924!9.34e-13!173;UBERON:0006601!9.34e-13!173;UBERON:0000200!2.31e-12!6;UBERON:0004121!7.17e-11!169;UBERON:0000007!7.77e-11!2;UBERON:0004111!1.18e-09!241;UBERON:0001871!3.66e-09!7;UBERON:0000477!1.07e-08!286;UBERON:0000349!1.18e-08!5;UBERON:0002420!3.89e-08!9;UBERON:0007245!3.89e-08!9;UBERON:0010009!3.89e-08!9;UBERON:0010011!3.89e-08!9;UBERON:0000454!3.89e-08!9;UBERON:0002771!7.36e-07!3;UBERON:0000483!8.19e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;5.12e-50;1!UBERON:0007195;5.12e-50;1!UBERON:0006947;1.03e-17;3!UBERON:0004054;1.03e-17;3!UBERON:0005904;1.21e-13;4!UBERON:0004802;1.55e-11;19!UBERON:0000115;1.55e-11;19!UBERON:0002048;4.14e-10;22!UBERON:0004807;4.14e-10;22!UBERON:0000117;4.14e-10;22!UBERON:0000171;4.14e-10;22!UBERON:0000170;4.14e-10;22!UBERON:0000072;3.36e-07;37!UBERON:0005181;3.37e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,3.99e-50,1;UBERON:0007195,6.58e-50,1;UBERON:0006947,9.46e-18,3;UBERON:0004054,9.46e-18,3;UBERON:0005904,1.13e-13,4;UBERON:0004802,1.55e-11,19;UBERON:0000115,1.55e-11,19;UBERON:0002048,4.14e-10,22;UBERON:0000117,4.14e-10,22;UBERON:0000171,4.14e-10,22;UBERON:0000170,4.14e-10,22;UBERON:0005597,4.14e-10,22;UBERON:0000118,4.14e-10,22;UBERON:0004807,3.65e-08,28;UBERON:0005103,1.69e-07,8;UBERON:0000083,1.69e-07,8;UBERON:0009201,1.69e-07,8;UBERON:0006553,1.69e-07,8;UBERON:0003074,1.69e-07,8;UBERON:0003060,1.69e-07,8;UBERON:0005178,6.75e-07,34;UBERON:0002224,6.75e-07,34;UBERON:0000080,8.37e-07,9;UBERON:0002120,8.37e-07,9;UBERON:0004875,8.37e-07,9;UBERON:0005721,8.37e-07,9;UBERON:0005754,8.37e-07,9;UBERON:0007297,8.37e-07,9;UBERON:0005181,9.98e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,0.0882561266915003,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.242998226632099,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,2.40171224485641,0,0,0.0642292250964595,0,0,0,0.252071696221718,0.484100767249525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.126831620387814,0.546974809018219,0,0,0.175871244359621,0,0,0,0.606965604236632,0.455324382702595,0,0,0,0,0.197318320688547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0,4.22695961986686,0,0,0.470317296361523,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:3344392..3344399,+ | |||
}} |
Latest revision as of 04:48, 30 July 2015
Short description: | p@chr4:3344392..3344399, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:3344392..3344399, + |
Coexpression cluster: | C97_small_smallcell_gastrointestinal_argyrophil_putamen_duodenum_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 2.42e-50 | 1 |
epithelial cell of lung | 1.55e-11 | 19 |
Ontology term | p-value | n |
---|---|---|
epididymis | 3.99e-50 | 1 |
stroma of bone marrow | 6.58e-50 | 1 |
male genital duct | 9.46e-18 | 3 |
internal male genitalia | 9.46e-18 | 3 |
duct of male reproductive system | 1.13e-13 | 4 |
respiratory tract epithelium | 1.55e-11 | 19 |
lung epithelium | 1.55e-11 | 19 |
lung | 4.14e-10 | 22 |
respiratory tube | 4.14e-10 | 22 |
respiration organ | 4.14e-10 | 22 |
pair of lungs | 4.14e-10 | 22 |
lung primordium | 4.14e-10 | 22 |
lung bud | 4.14e-10 | 22 |
respiratory system epithelium | 3.65e-08 | 28 |
mesonephric epithelium | 1.69e-07 | 8 |
mesonephric tubule | 1.69e-07 | 8 |
nephric duct | 1.69e-07 | 8 |
renal duct | 1.69e-07 | 8 |
mesonephric duct | 1.69e-07 | 8 |
pronephric duct | 1.69e-07 | 8 |
thoracic cavity element | 6.75e-07 | 34 |
thoracic cavity | 6.75e-07 | 34 |
mesonephros | 8.37e-07 | 9 |
pronephros | 8.37e-07 | 9 |
nephrogenic cord | 8.37e-07 | 9 |
pronephric mesoderm | 8.37e-07 | 9 |
rostral part of nephrogenic cord | 8.37e-07 | 9 |
presumptive pronephric mesoderm | 8.37e-07 | 9 |
thoracic segment organ | 9.98e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
lung cancer | 2.58e-14 | 15 |
lung small cell carcinoma | 8.82e-14 | 4 |
respiratory system cancer | 1.72e-13 | 16 |
bronchus cancer | 1.89e-08 | 7 |
bronchogenic carcinoma | 1.89e-08 | 7 |
lung carcinoma | 7.48e-07 | 9 |