FFCP PHASE1:Mm9::chr7:133920453..133920518,+: Difference between revisions
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{{FFCP|EntrezGene=66090|HGNC=|MCL_coexpression_id=3001|UniProt=P61237,D3Z3G7,D3YZG6,Q8C1R4|association_with_transcript=0bp_to_ENSMUST00000038614,ENSMUST00000106357,ENSMUST00000106359,ENSMUST00000145762,ENSMUST00000156891,ENSMUST00000170882,NM_025347,NM_026875,uc009jsp.1,uc009jsq.1_5end|description=CAGE_peak_1_at_Ypel3_5end|id=chr7:133920453..133920518,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.41e-17!73;UBERON:0005743!2.41e-17!73;UBERON:0000073!6.72e-16!75;UBERON:0001016!6.72e-16!75;UBERON:0004121!2.96e-15!102;UBERON:0000924!2.96e-15!102;UBERON:0006601!2.96e-15!102;UBERON:0000955!5.11e-14!50;UBERON:0006238!5.11e-14!50;UBERON:0002616!1.43e-13!49;UBERON:0000033!1.73e-13!63;UBERON:0001049!3.45e-13!52;UBERON:0005068!3.45e-13!52;UBERON:0006241!3.45e-13!52;UBERON:0007135!3.45e-13!52;UBERON:0002346!4.22e-11!71;UBERON:0003075!4.22e-11!71;UBERON:0007284!4.22e-11!71;UBERON:0004111!9.40e-10!122;UBERON:0003080!1.83e-09!40;UBERON:0002020!2.47e-09!34;UBERON:0002780!5.48e-09!39;UBERON:0001890!5.48e-09!39;UBERON:0006240!5.48e-09!39;UBERON:0003056!9.54e-09!49;UBERON:0002791!1.11e-08!29;UBERON:0003528!1.11e-08!29;UBERON:0001893!1.11e-08!29;UBERON:0000025!1.25e-08!114;UBERON:0000475!1.40e-08!200;UBERON:0007811!9.90e-08!86;UBERON:0000477!2.26e-07!154;UBERON:0002021!3.34e-07!10;UBERON:0000411!3.34e-07!10;UBERON:0001950!3.34e-07!10;UBERON:0000956!4.00e-07!21;UBERON:0001869!4.00e-07!21;UBERON:0000203!4.00e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.41e-17,73;UBERON:0004121,1.89e-16,95;UBERON:0000924,1.89e-16,95;UBERON:0006601,1.89e-16,95;UBERON:0001016,6.72e-16,75;UBERON:0000073,2.44e-14,54;UBERON:0001049,3.45e-13,52;UBERON:0005068,3.45e-13,52;UBERON:0006241,3.45e-13,52;UBERON:0007135,3.45e-13,52;UBERON:0010371,1.69e-12,73;UBERON:0002346,1.92e-12,64;UBERON:0003075,1.92e-12,64;UBERON:0007284,1.92e-12,64;UBERON:0000955,2.47e-12,47;UBERON:0006238,2.47e-12,47;UBERON:0002616,6.66e-12,46;UBERON:0004111,9.40e-10,122;UBERON:0003080,1.83e-09,40;UBERON:0002020,2.47e-09,34;UBERON:0002780,5.48e-09,39;UBERON:0001890,5.48e-09,39;UBERON:0006240,5.48e-09,39;UBERON:0003056,9.54e-09,49;UBERON:0003528,1.11e-08,29;UBERON:0002791,1.11e-08,29;UBERON:0001893,1.11e-08,29;UBERON:0000025,1.25e-08,114;UBERON:0010314,2.06e-08,92;UBERON:0002021,3.34e-07,10;UBERON:0000411,3.34e-07,10;UBERON:0001950,3.34e-07,10;UBERON:0000956,4.00e-07,21;UBERON:0001869,4.00e-07,21;UBERON:0000203,4.00e-07,21|phase1_expression=134.525031568027,39.0852456556084,55.9649064449129,160.30603199262,132.236472705836,37.4370776363514,34.8082834487333,372.649911452389,55.6115452499084,37.216259685197,29.7919264712379,10.6096971463797,325.623788329153,312.790199855173,167.221100431463,258.560916456808,295.215112570078,278.395360928645,246.668866056724,294.526418347833,167.365195017305,110.808701540188,95.3379230357114,66.5568478820572,62.8581430124046,37.8993096315913,48.2453435698164,24.7791917588772,72.3989228128785,45.3654233567875,27.4945833212578,19.6859508772486,24.6025915033828,0,27.7297554961224,19.4494535069436,22.2544598325982,549.950562788297,435.203786899757,252.861968339345,937.052760433406,853.806856198057,603.003858464693,126.778095701406,137.061611008784,94.8936708675894,339.557843447049,110.974804597647,145.43225297022,140.767246929781,56.5545143366465,99.1892694118304,228.184344238521,327.863688189128,278.621759489103,99.5594017459115,282.521971779614,219.67631131019,186.738093373409,196.784644289196,159.091682280051,85.7276666134904,88.9294796111139,477.396800017782,518.165973985095,539.25440724409,273.534900903304,378.839249047053,148.898283274974,164.302226949668,154.168196670563,213.095634365237,199.444292479307,135.474823931739,109.647218844862,136.044380418283,507.634211407182,371.825528504067,386.01321807294,166.440495115505,125.612534666108,131.270169380304,506.158777189504,353.977681709927,325.460267764606,151.439092933465,138.242902055929,148.74675776859,28.6245010799436,73.9089857844362,130.439019915755,112.715527884562,61.1974200336975,122.512624501784,93.5678041124643,155.017302935678,136.652420788195,45.3344658057634,54.5550609666024,53.000936176551,130.421006713206,70.5795625778748,81.5376767061266,14.2213340630666,44.1641723662877,45.8581356509928,43.9806267162861,105.049169341535,306.323516354604,156.30957243526,55.3418192383973,81.901213665966,82.790963514925,93.5987597831786,137.813964763046,142.882914341841,252.63325702453,242.348522197772,213.19114301992,102.236649166763,198.978208132815,177.949217900627,165.888667484129,442.977345878471,471.883430450714,69.995233127154,57.5112597628417,61.1900785613276,46.3806328816686,361.444812883837,267.180352046078,110.450175507208,341.564789177823,398.404682520655,332.876447384415,319.453046980415,126.790007993644,215.099652184851,128.63588404274,161.198461609039,56.6023926887761,83.4544639093507,84.2690767489034,127.948390342522,159.545590509864,141.821888355329,1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:66090 | |||
|HGNC= | |||
|MCL_coexpression_id=3001 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P61237,uniprot:D3Z3G7,uniprot:D3YZG6,uniprot:Q8C1R4 | |||
|association_with_transcript=0bp_to_ENSMUST00000038614,ENSMUST00000106357,ENSMUST00000106359,ENSMUST00000145762,ENSMUST00000156891,ENSMUST00000170882,NM_025347,NM_026875,uc009jsp.1,uc009jsq.1_5end | |||
|cluster_id=chr7:133920453..133920518,+ | |||
|description=CAGE_peak_1_at_Ypel3_5end | |||
|id=chr7:133920453..133920518,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.41e-17!73;UBERON:0005743!2.41e-17!73;UBERON:0000073!6.72e-16!75;UBERON:0001016!6.72e-16!75;UBERON:0004121!2.96e-15!102;UBERON:0000924!2.96e-15!102;UBERON:0006601!2.96e-15!102;UBERON:0000955!5.11e-14!50;UBERON:0006238!5.11e-14!50;UBERON:0002616!1.43e-13!49;UBERON:0000033!1.73e-13!63;UBERON:0001049!3.45e-13!52;UBERON:0005068!3.45e-13!52;UBERON:0006241!3.45e-13!52;UBERON:0007135!3.45e-13!52;UBERON:0002346!4.22e-11!71;UBERON:0003075!4.22e-11!71;UBERON:0007284!4.22e-11!71;UBERON:0004111!9.40e-10!122;UBERON:0003080!1.83e-09!40;UBERON:0002020!2.47e-09!34;UBERON:0002780!5.48e-09!39;UBERON:0001890!5.48e-09!39;UBERON:0006240!5.48e-09!39;UBERON:0003056!9.54e-09!49;UBERON:0002791!1.11e-08!29;UBERON:0003528!1.11e-08!29;UBERON:0001893!1.11e-08!29;UBERON:0000025!1.25e-08!114;UBERON:0000475!1.40e-08!200;UBERON:0007811!9.90e-08!86;UBERON:0000477!2.26e-07!154;UBERON:0002021!3.34e-07!10;UBERON:0000411!3.34e-07!10;UBERON:0001950!3.34e-07!10;UBERON:0000956!4.00e-07!21;UBERON:0001869!4.00e-07!21;UBERON:0000203!4.00e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.41e-17,73;UBERON:0004121,1.89e-16,95;UBERON:0000924,1.89e-16,95;UBERON:0006601,1.89e-16,95;UBERON:0001016,6.72e-16,75;UBERON:0000073,2.44e-14,54;UBERON:0001049,3.45e-13,52;UBERON:0005068,3.45e-13,52;UBERON:0006241,3.45e-13,52;UBERON:0007135,3.45e-13,52;UBERON:0010371,1.69e-12,73;UBERON:0002346,1.92e-12,64;UBERON:0003075,1.92e-12,64;UBERON:0007284,1.92e-12,64;UBERON:0000955,2.47e-12,47;UBERON:0006238,2.47e-12,47;UBERON:0002616,6.66e-12,46;UBERON:0004111,9.40e-10,122;UBERON:0003080,1.83e-09,40;UBERON:0002020,2.47e-09,34;UBERON:0002780,5.48e-09,39;UBERON:0001890,5.48e-09,39;UBERON:0006240,5.48e-09,39;UBERON:0003056,9.54e-09,49;UBERON:0003528,1.11e-08,29;UBERON:0002791,1.11e-08,29;UBERON:0001893,1.11e-08,29;UBERON:0000025,1.25e-08,114;UBERON:0010314,2.06e-08,92;UBERON:0002021,3.34e-07,10;UBERON:0000411,3.34e-07,10;UBERON:0001950,3.34e-07,10;UBERON:0000956,4.00e-07,21;UBERON:0001869,4.00e-07,21;UBERON:0000203,4.00e-07,21 | |||
|phase1_expression=134.525031568027,39.0852456556084,55.9649064449129,160.30603199262,132.236472705836,37.4370776363514,34.8082834487333,372.649911452389,55.6115452499084,37.216259685197,29.7919264712379,10.6096971463797,325.623788329153,312.790199855173,167.221100431463,258.560916456808,295.215112570078,278.395360928645,246.668866056724,294.526418347833,167.365195017305,110.808701540188,95.3379230357114,66.5568478820572,62.8581430124046,37.8993096315913,48.2453435698164,24.7791917588772,72.3989228128785,45.3654233567875,27.4945833212578,19.6859508772486,24.6025915033828,0,27.7297554961224,19.4494535069436,22.2544598325982,549.950562788297,435.203786899757,252.861968339345,937.052760433406,853.806856198057,603.003858464693,126.778095701406,137.061611008784,94.8936708675894,339.557843447049,110.974804597647,145.43225297022,140.767246929781,56.5545143366465,99.1892694118304,228.184344238521,327.863688189128,278.621759489103,99.5594017459115,282.521971779614,219.67631131019,186.738093373409,196.784644289196,159.091682280051,85.7276666134904,88.9294796111139,477.396800017782,518.165973985095,539.25440724409,273.534900903304,378.839249047053,148.898283274974,164.302226949668,154.168196670563,213.095634365237,199.444292479307,135.474823931739,109.647218844862,136.044380418283,507.634211407182,371.825528504067,386.01321807294,166.440495115505,125.612534666108,131.270169380304,506.158777189504,353.977681709927,325.460267764606,151.439092933465,138.242902055929,148.74675776859,28.6245010799436,73.9089857844362,130.439019915755,112.715527884562,61.1974200336975,122.512624501784,93.5678041124643,155.017302935678,136.652420788195,45.3344658057634,54.5550609666024,53.000936176551,130.421006713206,70.5795625778748,81.5376767061266,14.2213340630666,44.1641723662877,45.8581356509928,43.9806267162861,105.049169341535,306.323516354604,156.30957243526,55.3418192383973,81.901213665966,82.790963514925,93.5987597831786,137.813964763046,142.882914341841,252.63325702453,242.348522197772,213.19114301992,102.236649166763,198.978208132815,177.949217900627,165.888667484129,442.977345878471,471.883430450714,69.995233127154,57.5112597628417,61.1900785613276,46.3806328816686,361.444812883837,267.180352046078,110.450175507208,341.564789177823,398.404682520655,332.876447384415,319.453046980415,126.790007993644,215.099652184851,128.63588404274,161.198461609039,56.6023926887761,83.4544639093507,84.2690767489034,127.948390342522,159.545590509864,141.821888355329,184.498695658106,175.659588731792,48.5027984098895,54.2734450081641,69.8525962930877,75.1841362226582,78.131277032393,115.619719285359,137.462467120506,89.9634886019589,25.9818879305897,31.9111404822247,31.2579849335152,43.4964122324554,58.8660410552551,63.9220318186603,61.5536312521547,64.1451395496536,72.6598101699552,68.1324458118695,53.3864068785242,139.301053444033,52.1654724225733,105.723846866937,153.382187660759,148.392987236712,119.874362948914,214.461857179074,319.851011766038,124.617485591313,134.150025891422,28.0317600663357,54.6017921370199,53.1821978560404,39.5623106258827,37.7148191045651,39.1385357166972,50.0293396676031,56.9434873853414,88.2786397320698,90.2293399592968,109.426059622633,83.0547011127452,59.3220809711786,78.2419740546393,116.29850358055,60.1247246021269,50.155097035671,55.2267904798094,56.6150691409974,84.1753794307496,109.201471569226,106.553565054374,140.377250728602,146.479813076003,186.576511849762,118.284598207772,82.0877920123183,99.8519695175071,106.584641270421,182.371249128264,198.971156795744,208.283946757201,210.593572613993,163.756579042786,63.4236864464468,171.084165767552,89.3138274404408,79.8816443173275,86.1293973799651,65.300658521976,133.154411896289,186.970228448604,53.6260695310472,43.3486837335789,42.7757616153474,68.2948622519541,130.822387062058,193.529480040329,266.162295678038,119.645074376599,118.483608962095,151.800939761928,193.522574679287,180.973860995459,256.173482747857,310.630044914901,190.910895020367,68.355233949646,111.478445507112,396.078305499883,399.340216219636,41.3116062349222,213.5904044149,117.369057622847,133.920489293747,165.44516945879,145.293029155152,147.93831959071,179.187443989331,189.856219085525,188.505028352796,223.337594539786,290.153148728892,122.352353449528,113.427789536042,124.608523905486,155.071915594183,159.294166007955,43.4577338717417,51.6973282409724,48.094295337754,76.1878883632394,80.2405736133651,90.7083309020456,91.2469660988539,74.151454704022,105.872313908498,85.389072945749,146.452471412425,220.264424922701,64.6419327572404,102.710794923507,103.096113850196,122.187420979526,126.106754044664,159.118902922251,272.496129457566,123.437318441512,157.603060722682,94.3861543675237,302.566274147616,208.450574864414,97.6466254586843,133.935769971519,158.395968253984,61.5024565288985,377.525914893398,225.720433533963,100.716791566053,148.340816423139,218.695778582446,163.212907898904,257.604223030544,126.97388720541,127.355821614529,140.549373359099,175.659393714781,45.7105510724741,48.999991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| |||
|short_description=p1@Ypel3 | |||
}} |
Revision as of 05:48, 4 August 2015
Short description: | p1@Ypel3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ypel3_5end |
Coexpression cluster: | MCL_coexpression_mm9:3001 |
Association with transcript: | 0bp_to_ENSMUST00000038614, ENSMUST00000106357, ENSMUST00000106359, ENSMUST00000145762, ENSMUST00000156891, ENSMUST00000170882, NM_025347, NM_026875, uc009jsp.1, uc009jsq.1_5end |
EntrezGene: | 66090 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.41e-17 | 73 |
ectoderm-derived structure | 1.89e-16 | 95 |
ectoderm | 1.89e-16 | 95 |
presumptive ectoderm | 1.89e-16 | 95 |
nervous system | 6.72e-16 | 75 |
regional part of nervous system | 2.44e-14 | 54 |
neural tube | 3.45e-13 | 52 |
neural rod | 3.45e-13 | 52 |
future spinal cord | 3.45e-13 | 52 |
neural keel | 3.45e-13 | 52 |
ecto-epithelium | 1.69e-12 | 73 |
neurectoderm | 1.92e-12 | 64 |
neural plate | 1.92e-12 | 64 |
presumptive neural plate | 1.92e-12 | 64 |
brain | 2.47e-12 | 47 |
future brain | 2.47e-12 | 47 |
regional part of brain | 6.66e-12 | 46 |
anatomical conduit | 9.40e-10 | 122 |
anterior neural tube | 1.83e-09 | 40 |
gray matter | 2.47e-09 | 34 |
regional part of forebrain | 5.48e-09 | 39 |
forebrain | 5.48e-09 | 39 |
future forebrain | 5.48e-09 | 39 |
pre-chordal neural plate | 9.54e-09 | 49 |
brain grey matter | 1.11e-08 | 29 |
regional part of telencephalon | 1.11e-08 | 29 |
telencephalon | 1.11e-08 | 29 |
tube | 1.25e-08 | 114 |
structure with developmental contribution from neural crest | 2.06e-08 | 92 |
occipital lobe | 3.34e-07 | 10 |
visual cortex | 3.34e-07 | 10 |
neocortex | 3.34e-07 | 10 |
cerebral cortex | 4.00e-07 | 21 |
cerebral hemisphere | 4.00e-07 | 21 |
pallium | 4.00e-07 | 21 |