FFCP PHASE1:Mm9::chr5:38550696..38550730,-: Difference between revisions
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{{FFCP|EntrezGene=18196|HGNC=|MCL_coexpression_id=13|UniProt=Q62092|association_with_transcript=0bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end|description=CAGE_peak_1_at_Nsg1_5end|id=chr5:38550696..38550730,-|ontology_enrichment_celltype=CL:0000055!9.01e-21!50;CL:0000393!2.23e-20!39;CL:0000211!2.23e-20!39;CL:0002319!7.83e-20!43;CL:0000221!2.87e-19!44;CL:0000133!2.87e-19!44;CL:0000540!1.03e-18!33;CL:0000047!1.03e-18!33;CL:0000031!1.03e-18!33;CL:0000404!1.03e-18!33;CL:0000117!5.04e-16!23;CL:0000337!5.04e-16!23;CL:0002321!2.68e-08!70;CL:0000220!2.68e-08!70|ontology_enrichment_celltype_v019_2=CL:0000393,1.22e-20,39;CL:0000211,1.22e-20,39;CL:0002319,4.37e-20,43;CL:0000221,1.63e-19,44;CL:0000133,1.63e-19,44;CL:0000540,5.95e-19,33;CL:0000047,5.95e-19,33;CL:0000031,5.95e-19,33;CL:0000404,5.95e-19,33;CL:0000117,3.18e-16,23;CL:0000337,3.18e-16,23;CL:0002321,2.25e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.56e-36!73;UBERON:0005743!1.56e-36!73;UBERON:0000073!3.12e-35!75;UBERON:0001016!3.12e-35!75;UBERON:0004121!4.84e-29!102;UBERON:0000924!4.84e-29!102;UBERON:0006601!4.84e-29!102;UBERON:0002346!2.46e-27!71;UBERON:0003075!2.46e-27!71;UBERON:0007284!2.46e-27!71;UBERON:0001049!5.05e-26!52;UBERON:0005068!5.05e-26!52;UBERON:0006241!5.05e-26!52;UBERON:0007135!5.05e-26!52;UBERON:0000955!2.95e-24!50;UBERON:0006238!2.95e-24!50;UBERON:0002616!8.16e-24!49;UBERON:0000033!2.65e-21!63;UBERON:0002020!7.88e-20!34;UBERON:0003080!9.86e-19!40;UBERON:0002780!3.43e-18!39;UBERON:0001890!3.43e-18!39;UBERON:0006240!3.43e-18!39;UBERON:0003056!5.42e-18!49;UBERON:0002791!2.21e-16!29;UBERON:0003528!2.21e-16!29;UBERON:0001893!2.21e-16!29;UBERON:0000956!2.16e-11!21;UBERON:0001869!2.16e-11!21;UBERON:0000203!2.16e-11!21;UBERON:0000153!4.41e-10!94;UBERON:0007811!8.93e-10!86;UBERON:0000025!2.67e-09!114;UBERON:0002619!3.19e-09!17;UBERON:0004111!3.62e-08!122;UBERON:0003076!7.65e-08!12;UBERON:0003057!7.65e-08!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.09e-37,73;UBERON:0001016,1.06e-35,75;UBERON:0004121,4.34e-28,95;UBERON:0000924,4.34e-28,95;UBERON:0006601,4.34e-28,95;UBERON:0000073,7.49e-28,54;UBERON:0002346,5.46e-27,64;UBERON:0003075,5.46e-27,64;UBERON:0007284,5.46e-27,64;UBERON:0001049,2.31e-26,52;UBERON:0005068,2.31e-26,52;UBERON:0006241,2.31e-26,52;UBERON:0007135,2.31e-26,52;UBERON:0000955,1.34e-22,47;UBERON:0006238,1.34e-22,47;UBERON:0002616,3.67e-22,46;UBERON:0010371,6.53e-22,73;UBERON:0010314,2.74e-21,92;UBERON:0002020,4.40e-20,34;UBERON:0003080,5.70e-19,40;UBERON:0002780,2.02e-18,39;UBERON:0001890,2.02e-18,39;UBERON:0006240,2.02e-18,39;UBERON:0003056,3.21e-18,49;UBERON:0003528,1.38e-16,29;UBERON:0002791,1.38e-16,29;UBERON:0001893,1.38e-16,29;UBERON:0000956,1.58e-11,21;UBERON:0001869,1.58e-11,21;UBERON:0000203,1.58e-11,21;UBERON:0002619,2.50e-09,17;UBERON:0000025,5.23e-09,114;UBERON:0004111,5.93e-08,122;UBERON:0003076,6.26e-08,12;UBERON:0003057,6.26e-08,12|phase1_expression=8.80818659076367,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0.0874204024189974,0.999329285446988,0,0,0,0,0,19.7300433150482,0.198581902401771,0.261199789138935,0,0,0,0,0,0,0.504060259519861,0,0,0,0,0,0,0,0,0,0,0,0,0,33.362656763528,35.9888105829277,63.3236294957801,31.2956537739216,30.5235218932625,28.9985761209503,16.7209713203884,30.9369991792051,31.6255641602937,0,0,0,25.4686841675588,21.203474555468,10.8291139378263,181.2755489302,216.357310522261,205.995206139508,36.5952094634663,46.2433293977792,24.2972923665978,21.7550599764734,22.7353636782752,27.2636100571748,31.5059010363675,98.2977524684368,138.246080851651,120.516202854342,180.531422143204,172.719199024162,125.553069195328,135.429650548768,175.570788242514,115.621675049358,109.300361400921,104.913262214014,182.662508506318,203.194056440952,178.152372730412,145.454342479719,114.803572446463,104.514001479338,168.232922305464,166.147751492553,166.454705121993,1.59025005999687,4.98772296704784,5.2175607966302,0.860423876981386,0,1.61910957491345,0,0,6.31999890592883,15.5091593546033,21.0426663728324,26.8538076627859,3.52108549441701,20.5322363862909,33.1246811618639,14.2213340630666,0.216491041011214,0,0,4.33898742932428,1.03575153458869,8.01587550950054,17.6955033301459,25.2706346999077,19.602317266765,23.8141772073144,15.7568867561844,8.67099480174761,0.494389935468748,2.16899035379867,1.76922110389975,6.63244084784378,1.98757366614354,0.969750506270444,0,106.572210112203,129.856958224342,1.53274233125155,0.239630249011841,0,0.254140454146129,61.1145808771677,57.1875753523283,112.334990788901,38.2413504423008,32.7315785382823,74.5959079968821,54.5130643907666,9.06370338267815,2.98576729464223,1.26361379216837,2.31486041475121,13.7927669540466,15.6333431014762,21.7875177064473,17.3310540511072,14.9680298132921,14.476850392188,13.3056448874815,9.31332134660456,13.5807835547691,20.0452444977888,16.8913079197391,19.5084201860542,12.5121262151519,8.358051996532,9.67176041117334,9.75267907410617,0,0.257347907114715,0.284163499395593,2.8997608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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18196 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q62092 | |||
|association_with_transcript=0bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end | |||
|cluster_id=chr5:38550696..38550730,- | |||
|description=CAGE_peak_1_at_Nsg1_5end | |||
|id=chr5:38550696..38550730,- | |||
|ontology_enrichment_celltype=CL:0000055!9.01e-21!50;CL:0000393!2.23e-20!39;CL:0000211!2.23e-20!39;CL:0002319!7.83e-20!43;CL:0000221!2.87e-19!44;CL:0000133!2.87e-19!44;CL:0000540!1.03e-18!33;CL:0000047!1.03e-18!33;CL:0000031!1.03e-18!33;CL:0000404!1.03e-18!33;CL:0000117!5.04e-16!23;CL:0000337!5.04e-16!23;CL:0002321!2.68e-08!70;CL:0000220!2.68e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.22e-20,39;CL:0000211,1.22e-20,39;CL:0002319,4.37e-20,43;CL:0000221,1.63e-19,44;CL:0000133,1.63e-19,44;CL:0000540,5.95e-19,33;CL:0000047,5.95e-19,33;CL:0000031,5.95e-19,33;CL:0000404,5.95e-19,33;CL:0000117,3.18e-16,23;CL:0000337,3.18e-16,23;CL:0002321,2.25e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.56e-36!73;UBERON:0005743!1.56e-36!73;UBERON:0000073!3.12e-35!75;UBERON:0001016!3.12e-35!75;UBERON:0004121!4.84e-29!102;UBERON:0000924!4.84e-29!102;UBERON:0006601!4.84e-29!102;UBERON:0002346!2.46e-27!71;UBERON:0003075!2.46e-27!71;UBERON:0007284!2.46e-27!71;UBERON:0001049!5.05e-26!52;UBERON:0005068!5.05e-26!52;UBERON:0006241!5.05e-26!52;UBERON:0007135!5.05e-26!52;UBERON:0000955!2.95e-24!50;UBERON:0006238!2.95e-24!50;UBERON:0002616!8.16e-24!49;UBERON:0000033!2.65e-21!63;UBERON:0002020!7.88e-20!34;UBERON:0003080!9.86e-19!40;UBERON:0002780!3.43e-18!39;UBERON:0001890!3.43e-18!39;UBERON:0006240!3.43e-18!39;UBERON:0003056!5.42e-18!49;UBERON:0002791!2.21e-16!29;UBERON:0003528!2.21e-16!29;UBERON:0001893!2.21e-16!29;UBERON:0000956!2.16e-11!21;UBERON:0001869!2.16e-11!21;UBERON:0000203!2.16e-11!21;UBERON:0000153!4.41e-10!94;UBERON:0007811!8.93e-10!86;UBERON:0000025!2.67e-09!114;UBERON:0002619!3.19e-09!17;UBERON:0004111!3.62e-08!122;UBERON:0003076!7.65e-08!12;UBERON:0003057!7.65e-08!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.09e-37,73;UBERON:0001016,1.06e-35,75;UBERON:0004121,4.34e-28,95;UBERON:0000924,4.34e-28,95;UBERON:0006601,4.34e-28,95;UBERON:0000073,7.49e-28,54;UBERON:0002346,5.46e-27,64;UBERON:0003075,5.46e-27,64;UBERON:0007284,5.46e-27,64;UBERON:0001049,2.31e-26,52;UBERON:0005068,2.31e-26,52;UBERON:0006241,2.31e-26,52;UBERON:0007135,2.31e-26,52;UBERON:0000955,1.34e-22,47;UBERON:0006238,1.34e-22,47;UBERON:0002616,3.67e-22,46;UBERON:0010371,6.53e-22,73;UBERON:0010314,2.74e-21,92;UBERON:0002020,4.40e-20,34;UBERON:0003080,5.70e-19,40;UBERON:0002780,2.02e-18,39;UBERON:0001890,2.02e-18,39;UBERON:0006240,2.02e-18,39;UBERON:0003056,3.21e-18,49;UBERON:0003528,1.38e-16,29;UBERON:0002791,1.38e-16,29;UBERON:0001893,1.38e-16,29;UBERON:0000956,1.58e-11,21;UBERON:0001869,1.58e-11,21;UBERON:0000203,1.58e-11,21;UBERON:0002619,2.50e-09,17;UBERON:0000025,5.23e-09,114;UBERON:0004111,5.93e-08,122;UBERON:0003076,6.26e-08,12;UBERON:0003057,6.26e-08,12 | |||
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| |||
|short_description=p1@Nsg1 | |||
}} |
Revision as of 09:40, 4 August 2015
Short description: | p1@Nsg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nsg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000031009, NM_010942, uc008xga.1_5end |
EntrezGene: | 18196 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.22e-20 | 39 |
electrically active cell | 1.22e-20 | 39 |
neural cell | 4.37e-20 | 43 |
ectodermal cell | 1.63e-19 | 44 |
neurectodermal cell | 1.63e-19 | 44 |
neuron | 5.95e-19 | 33 |
neuronal stem cell | 5.95e-19 | 33 |
neuroblast | 5.95e-19 | 33 |
electrically signaling cell | 5.95e-19 | 33 |
CNS neuron (sensu Vertebrata) | 3.18e-16 | 23 |
neuroblast (sensu Vertebrata) | 3.18e-16 | 23 |
embryonic cell | 2.25e-09 | 70 |