FFCP PHASE1:Mm9::chr12:85455271..85455333,+: Difference between revisions
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{{FFCP|EntrezGene=105000|HGNC=|MCL_coexpression_id=1|UniProt=Q05A62|association_with_transcript=0bp_to_ENSMUST00000046340,ENSMUST00000110295,ENSMUST00000123491,ENSMUST00000143753,NM_028821,uc007oek.2,uc011yos.1_5end|description=CAGE_peak_1_at_Dnalc1_5end|id=chr12:85455271..85455333,+|ontology_enrichment_celltype=CL:0000540!1.18e-07!33;CL:0000047!1.18e-07!33;CL:0000031!1.18e-07!33;CL:0000404!1.18e-07!33;CL:0000117!1.55e-07!23;CL:0000337!1.55e-07!23;CL:0000393!2.31e-07!39;CL:0000211!2.31e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.12e-07,33;CL:0000047,1.12e-07,33;CL:0000031,1.12e-07,33;CL:0000404,1.12e-07,33;CL:0000117,1.47e-07,23;CL:0000337,1.47e-07,23;CL:0000393,2.20e-07,39;CL:0000211,2.20e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!5.10e-25!63;UBERON:0001017!1.13e-23!73;UBERON:0005743!1.13e-23!73;UBERON:0002346!2.19e-23!71;UBERON:0003075!2.19e-23!71;UBERON:0007284!2.19e-23!71;UBERON:0000955!4.02e-23!50;UBERON:0006238!4.02e-23!50;UBERON:0000073!5.48e-23!75;UBERON:0001016!5.48e-23!75;UBERON:0001049!1.21e-22!52;UBERON:0005068!1.21e-22!52;UBERON:0006241!1.21e-22!52;UBERON:0007135!1.21e-22!52;UBERON:0002616!1.96e-22!49;UBERON:0004121!7.16e-22!102;UBERON:0000924!7.16e-22!102;UBERON:0006601!7.16e-22!102;UBERON:0003056!8.57e-22!49;UBERON:0003080!1.72e-19!40;UBERON:0002780!7.55e-19!39;UBERON:0001890!7.55e-19!39;UBERON:0006240!7.55e-19!39;UBERON:0002020!2.05e-15!34;UBERON:0002791!2.76e-14!29;UBERON:0003528!2.76e-14!29;UBERON:0001893!2.76e-14!29;UBERON:0000153!5.86e-14!94;UBERON:0007811!1.84e-12!86;UBERON:0004111!6.83e-12!122;UBERON:0000025!1.04e-11!114;UBERON:0000956!2.95e-10!21;UBERON:0001869!2.95e-10!21;UBERON:0000203!2.95e-10!21;UBERON:0002619!1.92e-09!17;UBERON:0000468!5.90e-09!333;UBERON:0002021!4.61e-08!10;UBERON:0000411!4.61e-08!10;UBERON:0001950!4.61e-08!10;UBERON:0000922!3.16e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.03e-24,64;UBERON:0003075,1.03e-24,64;UBERON:0007284,1.03e-24,64;UBERON:0000073,7.36e-24,54;UBERON:0001017,9.33e-24,73;UBERON:0001016,4.57e-23,75;UBERON:0001049,1.02e-22,52;UBERON:0005068,1.02e-22,52;UBERON:0006241,1.02e-22,52;UBERON:0007135,1.02e-22,52;UBERON:0004121,2.00e-22,95;UBERON:0000924,2.00e-22,95;UBERON:0006601,2.00e-22,95;UBERON:0003056,7.22e-22,49;UBERON:0000955,1.90e-21,47;UBERON:0006238,1.90e-21,47;UBERON:0010371,2.44e-21,73;UBERON:0010314,5.89e-21,92;UBERON:0002616,9.05e-21,46;UBERON:0003080,1.48e-19,40;UBERON:0002780,6.52e-19,39;UBERON:0001890,6.52e-19,39;UBERON:0006240,6.52e-19,39;UBERON:0002020,1.82e-15,34;UBERON:0003528,2.48e-14,29;UBERON:0002791,2.48e-14,29;UBERON:0001893,2.48e-14,29;UBERON:0004111,1.25e-11,122;UBERON:0000025,1.92e-11,114;UBERON:0000956,2.74e-10,21;UBERON:0001869,2.74e-10,21;UBERON:0000203,2.74e-10,21;UBERON:0002619,1.80e-09,17;UBERON:0002021,4.37e-08,10;UBERON:0000411,4.37e-08,10;UBERON:0001950,4.37e-08,10;UBERON:0000922,6.42e-08,320|phase1_expression=12.1713123799643,0,0.454999239389536,0,0,0.503637815735669,1.86890112476421,0.387369970324729,0,0,0.171217968225505,0.0797721589953364,0,0.0874204024189974,0.333109761815663,0.607425802169478,0.699561878128147,0.473193248037357,0.685572168028694,0.84877930359606,24.8326407241124,3.97163804803541,6.52999472847338,1.27993938234725,0.91763712426868,0,0.430761996159075,0.215471232685889,0,0,0.443461021310609,0.635030673459631,0,0,1.1554064790051,0.997407872150954,0.816677425049476,0,0,0,0,0,0.485510353031154,11.0789199818508,10.8473316404881,9.36088436024576,3.12956537739216,10.0291571935005,7.90870257844099,15.5543919259427,11.8988458381558,5.75010257459886,0.503347818173209,0,0,10.0331180054019,9.16907007804022,10.8291139378263,14.566785181891,11.1088105647127,8.23980824558033,4.40497891689872,4.4464739805557,0.899899717281399,0.988866362566974,0,2.99600110518405,11.1423308543251,12.8575119262512,13.6355997715008,11.567872874326,12.5686433137674,10.8225585066291,13.7189695120749,16.3895755441184,13.7882817991503,22.0231761998777,40.0938241587489,34.4078634493985,16.4857859662742,23.3293491186145,17.7110545989298,23.7305549151174,33.7657566019008,37.1299742097649,17.0884579574727,23.3489556510529,14.911955666024,4.39211921332468,10.58001841495,7.24661221754194,0.860423876981386,2.03991400112325,0.539703191637817,0.649776417447669,0.448026887097336,8.70755404816862,14.1457167739788,8.57293815189467,8.48014978824817,11.1266301623578,11.5493829672886,20.3844191765317,7.11066703153331,4.76280290224671,4.05375784760158,4.54972000513305,6.2801133845483,5.43769555659061,14.1020032111584,7.98032503124225,7.00270600117925,8.07154240396205,11.4549206819993,10.8181610564848,8.29399502775858,7.16865406429684,14.3153363350713,0.884610551949874,7.44127509758082,3.09178125844551,3.39412677194655,1.86391761218122,43.6243387547205,28.065858713003,2.04365644166873,0.479260498023681,0.599902730993408,0.254140454146129,55.1229553009748,79.605104890441,38.5758860986494,90.3886464999838,89.756125522946,50.4924948279731,64.0852989117643,11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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:105000 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q05A62 | |||
|association_with_transcript=0bp_to_ENSMUST00000046340,ENSMUST00000110295,ENSMUST00000123491,ENSMUST00000143753,NM_028821,uc007oek.2,uc011yos.1_5end | |||
|cluster_id=chr12:85455271..85455333,+ | |||
|description=CAGE_peak_1_at_Dnalc1_5end | |||
|id=chr12:85455271..85455333,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.18e-07!33;CL:0000047!1.18e-07!33;CL:0000031!1.18e-07!33;CL:0000404!1.18e-07!33;CL:0000117!1.55e-07!23;CL:0000337!1.55e-07!23;CL:0000393!2.31e-07!39;CL:0000211!2.31e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.12e-07,33;CL:0000047,1.12e-07,33;CL:0000031,1.12e-07,33;CL:0000404,1.12e-07,33;CL:0000117,1.47e-07,23;CL:0000337,1.47e-07,23;CL:0000393,2.20e-07,39;CL:0000211,2.20e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!5.10e-25!63;UBERON:0001017!1.13e-23!73;UBERON:0005743!1.13e-23!73;UBERON:0002346!2.19e-23!71;UBERON:0003075!2.19e-23!71;UBERON:0007284!2.19e-23!71;UBERON:0000955!4.02e-23!50;UBERON:0006238!4.02e-23!50;UBERON:0000073!5.48e-23!75;UBERON:0001016!5.48e-23!75;UBERON:0001049!1.21e-22!52;UBERON:0005068!1.21e-22!52;UBERON:0006241!1.21e-22!52;UBERON:0007135!1.21e-22!52;UBERON:0002616!1.96e-22!49;UBERON:0004121!7.16e-22!102;UBERON:0000924!7.16e-22!102;UBERON:0006601!7.16e-22!102;UBERON:0003056!8.57e-22!49;UBERON:0003080!1.72e-19!40;UBERON:0002780!7.55e-19!39;UBERON:0001890!7.55e-19!39;UBERON:0006240!7.55e-19!39;UBERON:0002020!2.05e-15!34;UBERON:0002791!2.76e-14!29;UBERON:0003528!2.76e-14!29;UBERON:0001893!2.76e-14!29;UBERON:0000153!5.86e-14!94;UBERON:0007811!1.84e-12!86;UBERON:0004111!6.83e-12!122;UBERON:0000025!1.04e-11!114;UBERON:0000956!2.95e-10!21;UBERON:0001869!2.95e-10!21;UBERON:0000203!2.95e-10!21;UBERON:0002619!1.92e-09!17;UBERON:0000468!5.90e-09!333;UBERON:0002021!4.61e-08!10;UBERON:0000411!4.61e-08!10;UBERON:0001950!4.61e-08!10;UBERON:0000922!3.16e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.03e-24,64;UBERON:0003075,1.03e-24,64;UBERON:0007284,1.03e-24,64;UBERON:0000073,7.36e-24,54;UBERON:0001017,9.33e-24,73;UBERON:0001016,4.57e-23,75;UBERON:0001049,1.02e-22,52;UBERON:0005068,1.02e-22,52;UBERON:0006241,1.02e-22,52;UBERON:0007135,1.02e-22,52;UBERON:0004121,2.00e-22,95;UBERON:0000924,2.00e-22,95;UBERON:0006601,2.00e-22,95;UBERON:0003056,7.22e-22,49;UBERON:0000955,1.90e-21,47;UBERON:0006238,1.90e-21,47;UBERON:0010371,2.44e-21,73;UBERON:0010314,5.89e-21,92;UBERON:0002616,9.05e-21,46;UBERON:0003080,1.48e-19,40;UBERON:0002780,6.52e-19,39;UBERON:0001890,6.52e-19,39;UBERON:0006240,6.52e-19,39;UBERON:0002020,1.82e-15,34;UBERON:0003528,2.48e-14,29;UBERON:0002791,2.48e-14,29;UBERON:0001893,2.48e-14,29;UBERON:0004111,1.25e-11,122;UBERON:0000025,1.92e-11,114;UBERON:0000956,2.74e-10,21;UBERON:0001869,2.74e-10,21;UBERON:0000203,2.74e-10,21;UBERON:0002619,1.80e-09,17;UBERON:0002021,4.37e-08,10;UBERON:0000411,4.37e-08,10;UBERON:0001950,4.37e-08,10;UBERON:0000922,6.42e-08,320 | |||
|phase1_expression=12.1713123799643,0,0.454999239389536,0,0,0.503637815735669,1.86890112476421,0.387369970324729,0,0,0.171217968225505,0.0797721589953364,0,0.0874204024189974,0.333109761815663,0.607425802169478,0.699561878128147,0.473193248037357,0.685572168028694,0.84877930359606,24.8326407241124,3.97163804803541,6.52999472847338,1.27993938234725,0.91763712426868,0,0.430761996159075,0.215471232685889,0,0,0.443461021310609,0.635030673459631,0,0,1.1554064790051,0.997407872150954,0.816677425049476,0,0,0,0,0,0.485510353031154,11.0789199818508,10.8473316404881,9.36088436024576,3.12956537739216,10.0291571935005,7.90870257844099,15.5543919259427,11.8988458381558,5.75010257459886,0.503347818173209,0,0,10.0331180054019,9.16907007804022,10.8291139378263,14.566785181891,11.1088105647127,8.23980824558033,4.40497891689872,4.4464739805557,0.899899717281399,0.988866362566974,0,2.99600110518405,11.1423308543251,12.8575119262512,13.6355997715008,11.567872874326,12.5686433137674,10.8225585066291,13.7189695120749,16.3895755441184,13.7882817991503,22.0231761998777,40.0938241587489,34.4078634493985,16.4857859662742,23.3293491186145,17.7110545989298,23.7305549151174,33.7657566019008,37.1299742097649,17.0884579574727,23.3489556510529,14.911955666024,4.39211921332468,10.58001841495,7.24661221754194,0.860423876981386,2.03991400112325,0.539703191637817,0.649776417447669,0.448026887097336,8.70755404816862,14.1457167739788,8.57293815189467,8.48014978824817,11.1266301623578,11.5493829672886,20.3844191765317,7.11066703153331,4.76280290224671,4.05375784760158,4.54972000513305,6.2801133845483,5.43769555659061,14.1020032111584,7.98032503124225,7.00270600117925,8.07154240396205,11.4549206819993,10.8181610564848,8.29399502775858,7.16865406429684,14.3153363350713,0.884610551949874,7.44127509758082,3.09178125844551,3.39412677194655,1.86391761218122,43.6243387547205,28.065858713003,2.04365644166873,0.479260498023681,0.599902730993408,0.254140454146129,55.1229553009748,79.605104890441,38.5758860986494,90.3886464999838,89.756125522946,50.4924948279731,64.0852989117643,11.2023300235348,9.08170885453679,14.1524744722858,13.0473950649614,11.1903580947925,12.8745178482745,14.7650946440386,14.7690721479001,12.1104968489364,17.935920839879,15.3670828277955,32.0792179716379,8.62271971731369,18.3432897762785,18.2989169130507,13.3709396780821,14.7365042089567,13.9300866608867,14.404749548556,12.1410902759281,0.702213187313235,0.772043721344145,0.568326998791185,7.24940203874257,9.85009451920604,10.8037236876609,10.8902578369197,12.0026181365916,10.7986979021165,6.97601834251224,10.4626626545851,7.47298191149885,5.9241545968853,9.85004784474571,8.431156192769,8.33339928324394,10.0993053033883,9.93127498826751,82.0130799400096,28.8132914661996,0.660837565967596,1.85115396664481,8.74481827194459,14.6309103272076,9.40732467651281,7.26060688644033,4.22518283305254,5.32631753115166,2.37264530772256,2.9645811850322,4.52403375840485,4.37704238490532,5.45899443933536,3.59527763461689,1.94524244887225,2.58883655230677,9.86273084956025,12.224590849241,12.3978509240388,12.8300336542548,11.8311017172252,6.94344616914154,13.6590920188396,11.513591542409,10.2049173096894,9.87177311374404,0.889357881261447,3.67059232575407,1.57247196090562,0.674586337154561,1.42002084971952,1.20588579876208,2.03700681425136,2.30156909960649,1.13494658742525,1.37280706594041,4.31304619582064,1.48856379067401,0.936113019343682,1.26289438973556,2.51156378930677,2.41221760681684,19.0295785871603,10.8010104709176,13.8520229975722,11.0334305753872,16.8976978767722,16.2481069718561,17.139142143793,10.5372169843211,19.5467578691677,13.2878813789265,13.2347457985714,14.0922450655535,13.8147985492716,14.7542039753142,1.50791283939272,2.17562273527484,3.44234991113325,3.86311444826625,39.9770969069602,34.6946592312921,9.67216177722385,10.3513080153793,7.2566890465739,9.76096860741596,12.4945570685023,10.9925647058174,12.9223230967789,10.7569081699756,14.9779959619711,13.151513606009,9.48690667071656,72.9399388277502,14.9037089468682,8.90328018336276,8.47012188638596,21.1161757404845,2.65490276679926,7.04063844849446,6.65111825322452,7.16699303072413,7.08724542913855,10.4527950300935,5.94385074286909,6.18007340111759,5.70395805415554,5.37262488490887,2.10837217149998,4.12542172992747,52.0872596803296,13.5045820523483,13.4533031134065,17.7899739076222,36.8867685975929,22.652839835463,25.0114511315224,15.22324745573,6.10146440965647,7.83778662196135,9.48272111636336,6.5954501176592,8.07322133479528,7.84068024066026,7.75920236020387,6.72977688954751,3.20628920292836,39.1247387242175,1.19609616558497,7.84270098260245,6.2966139305702,3.39063222608444,0.683471138605126,0.686334519619568,0.849892149969277,1.11961161858926,0.552799895217695,8.59203556213602,12.6534397432454,13.2157653632452,9.18045396985311,9.19988502463662,6.98760203987768,6.74321731924104,6.69492991375221,4.97336289769656,2.72191443912765,8.07741107013003,55.8056009297348,9.27002585472668,7.44563207056939,12.055973677331,8.52454834953025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| |||
|short_description=p1@Dnalc1 | |||
}} |
Revision as of 09:19, 5 August 2015
Short description: | p1@Dnalc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dnalc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000046340, ENSMUST00000110295, ENSMUST00000123491, ENSMUST00000143753, NM_028821, uc007oek.2, uc011yos.1_5end |
EntrezGene: | 105000 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.12e-07 | 33 |
neuronal stem cell | 1.12e-07 | 33 |
neuroblast | 1.12e-07 | 33 |
electrically signaling cell | 1.12e-07 | 33 |
CNS neuron (sensu Vertebrata) | 1.47e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.47e-07 | 23 |
electrically responsive cell | 2.20e-07 | 39 |
electrically active cell | 2.20e-07 | 39 |