FFCP PHASE1:Hg19::chr19:12721616..12721640,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:12721616..12721640,-
|short_description=p2@ZNF490
|description=CAGE_peak_2_at_ZNF490_5end
|association_with_transcript=0bp_to_ENST00000311437,ENST00000414...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57474 | |EntrezGene=57474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23705 | |HGNC=23705 | ||
|TSSclassifier=strong | |||
|UniProt=Q9ULM2,F8WDW6 | |UniProt=Q9ULM2,F8WDW6 | ||
|association_with_transcript=0bp_to_ENST00000311437,ENST00000414906,NM_020714,uc002mtz.2_5end | |||
|cluster_id=chr19:12721616..12721640,- | |||
|description=CAGE_peak_2_at_ZNF490_5end | |||
|id=chr19:12721616..12721640,- | |||
|ontology_enrichment_celltype=CL:0000738!1.45e-17!140;CL:0000037!1.63e-17!172;CL:0000566!1.63e-17!172;CL:0000988!1.64e-16!182;CL:0002032!1.64e-15!165;CL:0000837!1.64e-15!165;CL:0000838!1.39e-14!52;CL:0002031!1.50e-14!124;CL:0000542!2.91e-14!53;CL:0000051!2.91e-14!53;CL:0002087!2.74e-13!119;CL:0000791!5.83e-08!18;CL:0000789!5.83e-08!18;CL:0002420!5.83e-08!18;CL:0002419!5.83e-08!18;CL:0000790!5.83e-08!18;CL:0000084!1.35e-07!25;CL:0000827!1.35e-07!25;CL:0000945!2.61e-07!24;CL:0000826!2.61e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000542;9.50e-09;53!CL:0000791;6.57e-08;18!CL:0000789;6.57e-08;18!CL:0002419;6.57e-08;18!CL:0000945;6.76e-08;24!CL:0000084;6.91e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.77e-20,136;CL:0000037,1.24e-19,168;CL:0000988,6.41e-19,177;CL:0002032,1.60e-17,161;CL:0000837,1.60e-17,161;CL:0002031,9.24e-17,120;CL:0002087,2.00e-15,115;CL:0000838,1.22e-14,52;CL:0000542,2.56e-14,53;CL:0000051,2.56e-14,53;CL:0000791,5.54e-08,18;CL:0000789,5.54e-08,18;CL:0002420,5.54e-08,18;CL:0002419,5.54e-08,18;CL:0000790,5.54e-08,18;CL:0000084,1.29e-07,25;CL:0000827,1.29e-07,25;CL:0000945,2.42e-07,24;CL:0000826,2.42e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;9.50e-09;53!CL:0000790;6.57e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.74e-07!86;UBERON:0002780!4.20e-07!41;UBERON:0001890!4.20e-07!41;UBERON:0006240!4.20e-07!41;UBERON:0001017!4.42e-07!82;UBERON:0001049!5.70e-07!57;UBERON:0005068!5.70e-07!57;UBERON:0006241!5.70e-07!57;UBERON:0007135!5.70e-07!57;UBERON:0002616!5.93e-07!59;UBERON:0000073!8.20e-07!94;UBERON:0001016!8.20e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.66e-08,98;UBERON:0003061,6.66e-08,98;UBERON:0001049,1.59e-07,56;UBERON:0005068,1.59e-07,56;UBERON:0006241,1.59e-07,56;UBERON:0007135,1.59e-07,56;UBERON:0001017,1.78e-07,81;UBERON:0000073,2.48e-07,53;UBERON:0002616,2.48e-07,53;UBERON:0002193,4.06e-07,108;UBERON:0001016,5.15e-07,89;UBERON:0002780,5.18e-07,41;UBERON:0001890,5.18e-07,41;UBERON:0003080,5.18e-07,41;UBERON:0006240,5.18e-07,41;UBERON:0000955,5.79e-07,68;UBERON:0006238,5.79e-07,68 | |||
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| ||
|short_description=p2@ZNF490 | |||
}} | }} |
Latest revision as of 19:11, 15 September 2015
Short description: | p2@ZNF490 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ZNF490_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000311437, ENST00000414906, NM_020714, uc002mtz.2_5end |
EntrezGene: | ZNF490 |
HGNC: | 23705 |
UniProt: | Q9ULM2F8WDW6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.77e-20 | 136 |
hematopoietic stem cell | 1.24e-19 | 168 |
hematopoietic cell | 6.41e-19 | 177 |
hematopoietic oligopotent progenitor cell | 1.60e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.60e-17 | 161 |
hematopoietic lineage restricted progenitor cell | 9.24e-17 | 120 |
nongranular leukocyte | 2.00e-15 | 115 |
lymphoid lineage restricted progenitor cell | 1.22e-14 | 52 |
lymphocyte | 2.56e-14 | 53 |
common lymphoid progenitor | 2.56e-14 | 53 |
mature alpha-beta T cell | 5.54e-08 | 18 |
alpha-beta T cell | 5.54e-08 | 18 |
immature T cell | 5.54e-08 | 18 |
mature T cell | 5.54e-08 | 18 |
immature alpha-beta T cell | 5.54e-08 | 18 |
T cell | 1.29e-07 | 25 |
pro-T cell | 1.29e-07 | 25 |
lymphocyte of B lineage | 2.42e-07 | 24 |
pro-B cell | 2.42e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.66e-08 | 98 |
blood island | 6.66e-08 | 98 |
neural tube | 1.59e-07 | 56 |
neural rod | 1.59e-07 | 56 |
future spinal cord | 1.59e-07 | 56 |
neural keel | 1.59e-07 | 56 |
central nervous system | 1.78e-07 | 81 |
regional part of nervous system | 2.48e-07 | 53 |
regional part of brain | 2.48e-07 | 53 |
hemolymphoid system | 4.06e-07 | 108 |
nervous system | 5.15e-07 | 89 |
regional part of forebrain | 5.18e-07 | 41 |
forebrain | 5.18e-07 | 41 |
anterior neural tube | 5.18e-07 | 41 |
future forebrain | 5.18e-07 | 41 |
brain | 5.79e-07 | 68 |
future brain | 5.79e-07 | 68 |