FFCP PHASE1:Hg19::chr12:9067123..9067159,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1911 | |EntrezGene=1911 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3182 | |HGNC=3182 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000543824_5end | |association_with_transcript=0bp_to_ENST00000543824_5end | ||
|cluster_id=chr12:9067123..9067159,+ | |||
|coexpression_cluster_id=C130 | |||
|description=CAGE_peak_4_at_PHC1_5end | |description=CAGE_peak_4_at_PHC1_5end | ||
|id=chr12:9067123..9067159,+ | |id=chr12:9067123..9067159,+ | ||
|ontology_enrichment_celltype=CL:0000197!2.40e-08!6;CL:0000098!2.40e-08!6;CL:0002167!2.40e-08!6;CL:0002057!5.99e-08!42;CL:0000860!4.06e-07!45 | |ontology_enrichment_celltype=CL:0000197!2.40e-08!6;CL:0000098!2.40e-08!6;CL:0002167!2.40e-08!6;CL:0002057!5.99e-08!42;CL:0000860!4.06e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000097;2.93e-16;5!CL:0000540;5.44e-15;6!CL:0000404;5.44e-15;6!CL:0000163;4.25e-09;9!CL:0000228;8.20e-07;1!CL:0002372;8.20e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.94e-16,5;CL:0002028,2.94e-16,5;CL:0000540,5.37e-15,6;CL:0000031,5.37e-15,6;CL:0000404,5.37e-15,6;CL:0000047,2.87e-11,8;CL:0000163,4.25e-09,9;CL:0000228,8.21e-07,1;CL:0002372,8.21e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000031;5.44e-15;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;7.23e-08;34!UBERON:0002020;7.23e-08;34!UBERON:0002619;1.46e-07;22!UBERON:0000073;1.51e-07;53!UBERON:0002616;1.51e-07;53!UBERON:0001894;2.60e-07;7!UBERON:0002780;3.51e-07;41!UBERON:0001890;3.51e-07;41!UBERON:0001869;8.28e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.33e-14,81;UBERON:0001016,1.67e-14,89;UBERON:0000073,1.28e-13,53;UBERON:0002616,1.28e-13,53;UBERON:0001049,9.27e-13,56;UBERON:0005068,9.27e-13,56;UBERON:0006241,9.27e-13,56;UBERON:0007135,9.27e-13,56;UBERON:0003075,2.27e-12,82;UBERON:0007284,2.27e-12,82;UBERON:0002346,1.21e-11,86;UBERON:0003056,2.78e-11,61;UBERON:0002780,1.37e-10,41;UBERON:0001890,1.37e-10,41;UBERON:0003080,1.37e-10,41;UBERON:0006240,1.37e-10,41;UBERON:0000955,6.76e-10,68;UBERON:0006238,6.76e-10,68;UBERON:0010371,4.51e-09,104;UBERON:0003528,2.84e-08,34;UBERON:0002020,2.84e-08,34;UBERON:0002619,1.31e-07,22;UBERON:0004121,1.44e-07,171;UBERON:0000924,1.44e-07,171;UBERON:0006601,1.44e-07,171;UBERON:0001894,2.52e-07,7;UBERON:0006222,2.52e-07,7;UBERON:0002791,7.55e-07,32;UBERON:0001869,7.55e-07,32 | |||
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| ||
|short_description=p4@PHC1 | |short_description=p4@PHC1 | ||
}} | }} |
Latest revision as of 20:17, 15 September 2015
Short description: | p4@PHC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PHC1_5end |
Coexpression cluster: | C130_iPS_HES3GFP_H9_teratocarcinoma_testicular_colon_Alveolar |
Association with transcript: | 0bp_to_ENST00000543824_5end |
EntrezGene: | PHC1 |
HGNC: | 3182 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.94e-16 | 5 |
basophil mast progenitor cell | 2.94e-16 | 5 |
neuron | 5.37e-15 | 6 |
neuroblast | 5.37e-15 | 6 |
electrically signaling cell | 5.37e-15 | 6 |
neuronal stem cell | 2.87e-11 | 8 |
endocrine cell | 4.25e-09 | 9 |
multinucleate cell | 8.21e-07 | 1 |
myotube | 8.21e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.33e-14 | 81 |
nervous system | 1.67e-14 | 89 |
regional part of nervous system | 1.28e-13 | 53 |
regional part of brain | 1.28e-13 | 53 |
neural tube | 9.27e-13 | 56 |
neural rod | 9.27e-13 | 56 |
future spinal cord | 9.27e-13 | 56 |
neural keel | 9.27e-13 | 56 |
neural plate | 2.27e-12 | 82 |
presumptive neural plate | 2.27e-12 | 82 |
neurectoderm | 1.21e-11 | 86 |
pre-chordal neural plate | 2.78e-11 | 61 |
regional part of forebrain | 1.37e-10 | 41 |
forebrain | 1.37e-10 | 41 |
anterior neural tube | 1.37e-10 | 41 |
future forebrain | 1.37e-10 | 41 |
brain | 6.76e-10 | 68 |
future brain | 6.76e-10 | 68 |
ecto-epithelium | 4.51e-09 | 104 |
brain grey matter | 2.84e-08 | 34 |
gray matter | 2.84e-08 | 34 |
regional part of cerebral cortex | 1.31e-07 | 22 |
ectoderm-derived structure | 1.44e-07 | 171 |
ectoderm | 1.44e-07 | 171 |
presumptive ectoderm | 1.44e-07 | 171 |
diencephalon | 2.52e-07 | 7 |
future diencephalon | 2.52e-07 | 7 |
regional part of telencephalon | 7.55e-07 | 32 |
cerebral hemisphere | 7.55e-07 | 32 |