FFCP PHASE1:Hg19::chr17:55333945..55333971,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:55333945..55333971,+
|short_description=p4@MSI2
|description=CAGE_peak_4_at_MSI2_5end
|association_with_transcript=14bp_to_ENST00000284073,NM_138962,uc002...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=124540 | |EntrezGene=124540 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18585 | |HGNC=18585 | ||
|TSSclassifier=strong | |||
|UniProt=Q96DH6 | |UniProt=Q96DH6 | ||
|association_with_transcript=14bp_to_ENST00000284073,NM_138962,uc002iuz.1_5end | |||
|cluster_id=chr17:55333945..55333971,+ | |||
|coexpression_cluster_id=C3658 | |||
|description=CAGE_peak_4_at_MSI2_5end | |||
|id=chr17:55333945..55333971,+ | |||
|ontology_enrichment_celltype=CL:0000542!8.93e-08!53;CL:0000051!8.93e-08!53;CL:0000838!1.85e-07!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.49e-07,53;CL:0000051,3.49e-07,53;CL:0000838,8.17e-07,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.27e-16!94;UBERON:0001016!5.27e-16!94;UBERON:0001049!5.56e-16!57;UBERON:0005068!5.56e-16!57;UBERON:0006241!5.56e-16!57;UBERON:0007135!5.56e-16!57;UBERON:0005743!1.30e-15!86;UBERON:0001017!1.52e-15!82;UBERON:0003075!5.61e-15!86;UBERON:0007284!5.61e-15!86;UBERON:0002616!3.43e-14!59;UBERON:0002346!9.88e-14!90;UBERON:0000955!2.89e-13!69;UBERON:0006238!2.89e-13!69;UBERON:0004121!4.19e-12!169;UBERON:0003080!1.43e-11!42;UBERON:0007023!1.52e-11!115;UBERON:0000924!2.00e-11!173;UBERON:0006601!2.00e-11!173;UBERON:0002780!2.11e-11!41;UBERON:0001890!2.11e-11!41;UBERON:0006240!2.11e-11!41;UBERON:0003056!4.20e-11!61;UBERON:0000153!1.12e-09!129;UBERON:0007811!1.12e-09!129;UBERON:0000033!7.59e-09!123;UBERON:0002020!1.00e-08!34;UBERON:0003528!1.00e-08!34;UBERON:0001893!2.49e-08!34;UBERON:0002791!2.85e-08!33;UBERON:0001869!8.98e-08!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.81e-10;41!UBERON:0001890;9.81e-10;41!UBERON:0000073;2.83e-09;53!UBERON:0002616;2.83e-09;53!UBERON:0001016;6.27e-08;83!UBERON:0002791;1.13e-07;32!UBERON:0003528;1.54e-07;34!UBERON:0002020;1.54e-07;34!UBERON:0001869;2.28e-07;32!UBERON:0001017;2.75e-07;75!UBERON:0001893;3.90e-07;34!UBERON:0000955;9.55e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003075,1.11e-16,82;UBERON:0007284,1.11e-16,82;UBERON:0001016,1.67e-16,89;UBERON:0001049,1.98e-16,56;UBERON:0005068,1.98e-16,56;UBERON:0006241,1.98e-16,56;UBERON:0007135,1.98e-16,56;UBERON:0001017,3.20e-15,81;UBERON:0002346,6.18e-15,86;UBERON:0000073,1.79e-14,53;UBERON:0002616,1.79e-14,53;UBERON:0010371,6.65e-14,104;UBERON:0003056,1.10e-13,61;UBERON:0000955,1.44e-13,68;UBERON:0006238,1.44e-13,68;UBERON:0002780,2.40e-12,41;UBERON:0001890,2.40e-12,41;UBERON:0003080,2.40e-12,41;UBERON:0006240,2.40e-12,41;UBERON:0004121,3.30e-12,171;UBERON:0000924,3.30e-12,171;UBERON:0006601,3.30e-12,171;UBERON:0007023,9.77e-12,114;UBERON:0003528,5.71e-09,34;UBERON:0002020,5.71e-09,34;UBERON:0001893,1.66e-08,34;UBERON:0010314,1.91e-08,132;UBERON:0002791,4.41e-08,32;UBERON:0001869,8.36e-08,32;UBERON:0011216,2.70e-07,223 | |||
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| ||
|short_description=p4@MSI2 | |||
}} | }} |
Latest revision as of 08:51, 16 September 2015
Short description: | p4@MSI2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MSI2_5end |
Coexpression cluster: | C3658_anaplastic_granulocyte_spinal_CD34_seminal_pineal_merkel |
Association with transcript: | 14bp_to_ENST00000284073, NM_138962, uc002iuz.1_5end |
EntrezGene: | MSI2 |
HGNC: | 18585 |
UniProt: | Q96DH6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.49e-07 | 53 |
common lymphoid progenitor | 3.49e-07 | 53 |
lymphoid lineage restricted progenitor cell | 8.17e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
neural plate | 1.11e-16 | 82 |
presumptive neural plate | 1.11e-16 | 82 |
nervous system | 1.67e-16 | 89 |
neural tube | 1.98e-16 | 56 |
neural rod | 1.98e-16 | 56 |
future spinal cord | 1.98e-16 | 56 |
neural keel | 1.98e-16 | 56 |
central nervous system | 3.20e-15 | 81 |
neurectoderm | 6.18e-15 | 86 |
regional part of nervous system | 1.79e-14 | 53 |
regional part of brain | 1.79e-14 | 53 |
ecto-epithelium | 6.65e-14 | 104 |
pre-chordal neural plate | 1.10e-13 | 61 |
brain | 1.44e-13 | 68 |
future brain | 1.44e-13 | 68 |
regional part of forebrain | 2.40e-12 | 41 |
forebrain | 2.40e-12 | 41 |
anterior neural tube | 2.40e-12 | 41 |
future forebrain | 2.40e-12 | 41 |
ectoderm-derived structure | 3.30e-12 | 171 |
ectoderm | 3.30e-12 | 171 |
presumptive ectoderm | 3.30e-12 | 171 |
adult organism | 9.77e-12 | 114 |
brain grey matter | 5.71e-09 | 34 |
gray matter | 5.71e-09 | 34 |
telencephalon | 1.66e-08 | 34 |
structure with developmental contribution from neural crest | 1.91e-08 | 132 |
regional part of telencephalon | 4.41e-08 | 32 |
cerebral hemisphere | 8.36e-08 | 32 |
organ system subdivision | 2.70e-07 | 223 |