FFCP PHASE1:Hg19::chr12:114404118..114404153,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:114404118..114404153,-
|short_description=p1@RBM19
|description=CAGE_peak_1_at_RBM19_5end
|association_with_transcript=-3bp_to_ENST00000392561_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9904 | |EntrezGene=9904 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29098 | |HGNC=29098 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y4C8 | |UniProt=Q9Y4C8 | ||
|association_with_transcript=-3bp_to_ENST00000392561_5end | |||
|cluster_id=chr12:114404118..114404153,- | |||
|description=CAGE_peak_1_at_RBM19_5end | |||
|id=chr12:114404118..114404153,- | |||
|ontology_enrichment_celltype=CL:0000838!1.77e-11!52;CL:0000542!2.20e-11!53;CL:0000051!2.20e-11!53;CL:0000037!1.12e-09!172;CL:0000566!1.12e-09!172;CL:0000988!1.67e-09!182;CL:0002032!2.83e-08!165;CL:0000837!2.83e-08!165;CL:0000791!2.11e-07!18;CL:0000789!2.11e-07!18;CL:0002420!2.11e-07!18;CL:0002419!2.11e-07!18;CL:0000790!2.11e-07!18;CL:0000084!3.21e-07!25;CL:0000827!3.21e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.17e-07;18!CL:0000789;2.17e-07;18!CL:0002419;2.17e-07;18!CL:0000084;3.42e-07;25!CL:0000542;8.45e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.77e-11,52;CL:0000542,2.20e-11,53;CL:0000051,2.20e-11,53;CL:0000037,7.13e-10,168;CL:0000988,9.47e-10,177;CL:0002032,1.90e-08,161;CL:0000837,1.90e-08,161;CL:0000791,2.11e-07,18;CL:0000789,2.11e-07,18;CL:0002420,2.11e-07,18;CL:0002419,2.11e-07,18;CL:0000790,2.11e-07,18;CL:0000084,3.21e-07,25;CL:0000827,3.21e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.17e-07;18!CL:0000051;8.45e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.62e-10!115;UBERON:0001049!5.89e-09!57;UBERON:0005068!5.89e-09!57;UBERON:0006241!5.89e-09!57;UBERON:0007135!5.89e-09!57;UBERON:0002780!2.83e-08!41;UBERON:0001890!2.83e-08!41;UBERON:0006240!2.83e-08!41;UBERON:0002020!1.05e-07!34;UBERON:0003528!1.05e-07!34;UBERON:0003080!1.19e-07!42;UBERON:0001893!1.43e-07!34;UBERON:0002791!1.77e-07!33 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.21e-09,114;UBERON:0001049,1.55e-09,56;UBERON:0005068,1.55e-09,56;UBERON:0006241,1.55e-09,56;UBERON:0007135,1.55e-09,56;UBERON:0000073,4.36e-09,53;UBERON:0002616,4.36e-09,53;UBERON:0002780,2.83e-08,41;UBERON:0001890,2.83e-08,41;UBERON:0003080,2.83e-08,41;UBERON:0006240,2.83e-08,41;UBERON:0003528,1.05e-07,34;UBERON:0002020,1.05e-07,34;UBERON:0001893,1.43e-07,34;UBERON:0002791,5.14e-07,32;UBERON:0001016,6.57e-07,89 | |||
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| ||
|short_description=p1@RBM19 | |||
}} | }} |
Latest revision as of 13:34, 16 September 2015
Short description: | p1@RBM19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RBM19_5end |
Coexpression cluster: | NA |
Association with transcript: | -3bp_to_ENST00000392561_5end |
EntrezGene: | RBM19 |
HGNC: | 29098 |
UniProt: | Q9Y4C8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.77e-11 | 52 |
lymphocyte | 2.20e-11 | 53 |
common lymphoid progenitor | 2.20e-11 | 53 |
hematopoietic stem cell | 7.13e-10 | 168 |
hematopoietic cell | 9.47e-10 | 177 |
hematopoietic oligopotent progenitor cell | 1.90e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.90e-08 | 161 |
mature alpha-beta T cell | 2.11e-07 | 18 |
alpha-beta T cell | 2.11e-07 | 18 |
immature T cell | 2.11e-07 | 18 |
mature T cell | 2.11e-07 | 18 |
immature alpha-beta T cell | 2.11e-07 | 18 |
T cell | 3.21e-07 | 25 |
pro-T cell | 3.21e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.21e-09 | 114 |
neural tube | 1.55e-09 | 56 |
neural rod | 1.55e-09 | 56 |
future spinal cord | 1.55e-09 | 56 |
neural keel | 1.55e-09 | 56 |
regional part of nervous system | 4.36e-09 | 53 |
regional part of brain | 4.36e-09 | 53 |
regional part of forebrain | 2.83e-08 | 41 |
forebrain | 2.83e-08 | 41 |
anterior neural tube | 2.83e-08 | 41 |
future forebrain | 2.83e-08 | 41 |
brain grey matter | 1.05e-07 | 34 |
gray matter | 1.05e-07 | 34 |
telencephalon | 1.43e-07 | 34 |
regional part of telencephalon | 5.14e-07 | 32 |
nervous system | 6.57e-07 | 89 |