FFCP PHASE1:Hg19::chr13:21141270..21141349,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8100 | |EntrezGene=8100 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20606 | |HGNC=20606 | ||
|TSSclassifier=strong | |||
|UniProt=Q13099,F6SRW8,F5H6C2 | |UniProt=Q13099,F6SRW8,F5H6C2 | ||
|association_with_transcript=0bp_to_ENST00000319980,ENST00000389373,ENST00000537103,ENST00000540318_5end | |association_with_transcript=0bp_to_ENST00000319980,ENST00000389373,ENST00000537103,ENST00000540318_5end | ||
|cluster_id=chr13:21141270..21141349,+ | |||
|description=CAGE_peak_1_at_IFT88_5end | |description=CAGE_peak_1_at_IFT88_5end | ||
|id=chr13:21141270..21141349,+ | |id=chr13:21141270..21141349,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.26e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.49e-22!115;UBERON:0000073!1.42e-21!94;UBERON:0001016!1.42e-21!94;UBERON:0005743!4.72e-20!86;UBERON:0001017!8.68e-20!82;UBERON:0001049!7.05e-19!57;UBERON:0005068!7.05e-19!57;UBERON:0006241!7.05e-19!57;UBERON:0007135!7.05e-19!57;UBERON:0000955!1.24e-17!69;UBERON:0006238!1.24e-17!69;UBERON:0002616!6.44e-16!59;UBERON:0002346!2.49e-15!90;UBERON:0002780!3.40e-15!41;UBERON:0001890!3.40e-15!41;UBERON:0006240!3.40e-15!41;UBERON:0003080!6.53e-15!42;UBERON:0003075!1.19e-14!86;UBERON:0007284!1.19e-14!86;UBERON:0000153!1.35e-11!129;UBERON:0007811!1.35e-11!129;UBERON:0003056!1.61e-11!61;UBERON:0002020!3.19e-11!34;UBERON:0003528!3.19e-11!34;UBERON:0001893!4.15e-11!34;UBERON:0002791!8.01e-11!33;UBERON:0000033!1.00e-10!123;UBERON:0001869!4.44e-10!32;UBERON:0000924!5.28e-10!173;UBERON:0006601!5.28e-10!173;UBERON:0004121!1.99e-09!169;UBERON:0000956!5.92e-07!25;UBERON:0000203!5.92e-07!25;UBERON:0002619!7.14e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;4.35e-11;53!UBERON:0002616;4.35e-11;53!UBERON:0002780;4.65e-11;41!UBERON:0001890;4.65e-11;41!UBERON:0003528;8.46e-10;34!UBERON:0002020;8.46e-10;34!UBERON:0001893;2.65e-09;34!UBERON:0002791;2.79e-09;32!UBERON:0001869;4.10e-09;32!UBERON:0001016;5.62e-09;83!UBERON:0001017;1.52e-08;75!UBERON:0000955;5.90e-08;68!UBERON:0007023;3.30e-07;114!UBERON:0000956;6.63e-07;25!UBERON:0000203;6.63e-07;25!UBERON:0002619;8.72e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.94e-22,114;UBERON:0001016,1.82e-21,89;UBERON:0001017,5.70e-20,81;UBERON:0001049,3.83e-19,56;UBERON:0005068,3.83e-19,56;UBERON:0006241,3.83e-19,56;UBERON:0007135,3.83e-19,56;UBERON:0000955,7.91e-18,68;UBERON:0006238,7.91e-18,68;UBERON:0000073,1.21e-17,53;UBERON:0002616,1.21e-17,53;UBERON:0002346,2.05e-16,86;UBERON:0003075,9.84e-16,82;UBERON:0007284,9.84e-16,82;UBERON:0002780,3.40e-15,41;UBERON:0001890,3.40e-15,41;UBERON:0003080,3.40e-15,41;UBERON:0006240,3.40e-15,41;UBERON:0011216,9.93e-13,223;UBERON:0003056,3.93e-12,61;UBERON:0003528,3.19e-11,34;UBERON:0002020,3.19e-11,34;UBERON:0001893,4.15e-11,34;UBERON:0004121,1.48e-10,171;UBERON:0000924,1.48e-10,171;UBERON:0006601,1.48e-10,171;UBERON:0010314,1.68e-10,132;UBERON:0002791,2.83e-10,32;UBERON:0010371,3.15e-10,104;UBERON:0001869,4.44e-10,32;UBERON:0000956,5.92e-07,25;UBERON:0000203,5.92e-07,25;UBERON:0002619,7.14e-07,22 | |||
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| ||
|short_description=p1@IFT88 | |short_description=p1@IFT88 | ||
}} | }} |
Latest revision as of 18:58, 16 September 2015
Short description: | p1@IFT88 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IFT88_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000319980, ENST00000389373, ENST00000537103, ENST00000540318_5end |
EntrezGene: | IFT88 |
HGNC: | 20606 |
UniProt: | Q13099F6SRW8F5H6C2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 9.94e-22 | 114 |
nervous system | 1.82e-21 | 89 |
central nervous system | 5.70e-20 | 81 |
neural tube | 3.83e-19 | 56 |
neural rod | 3.83e-19 | 56 |
future spinal cord | 3.83e-19 | 56 |
neural keel | 3.83e-19 | 56 |
brain | 7.91e-18 | 68 |
future brain | 7.91e-18 | 68 |
regional part of nervous system | 1.21e-17 | 53 |
regional part of brain | 1.21e-17 | 53 |
neurectoderm | 2.05e-16 | 86 |
neural plate | 9.84e-16 | 82 |
presumptive neural plate | 9.84e-16 | 82 |
regional part of forebrain | 3.40e-15 | 41 |
forebrain | 3.40e-15 | 41 |
anterior neural tube | 3.40e-15 | 41 |
future forebrain | 3.40e-15 | 41 |
organ system subdivision | 9.93e-13 | 223 |
pre-chordal neural plate | 3.93e-12 | 61 |
brain grey matter | 3.19e-11 | 34 |
gray matter | 3.19e-11 | 34 |
telencephalon | 4.15e-11 | 34 |
ectoderm-derived structure | 1.48e-10 | 171 |
ectoderm | 1.48e-10 | 171 |
presumptive ectoderm | 1.48e-10 | 171 |
structure with developmental contribution from neural crest | 1.68e-10 | 132 |
regional part of telencephalon | 2.83e-10 | 32 |
ecto-epithelium | 3.15e-10 | 104 |
cerebral hemisphere | 4.44e-10 | 32 |
cerebral cortex | 5.92e-07 | 25 |
pallium | 5.92e-07 | 25 |
regional part of cerebral cortex | 7.14e-07 | 22 |