FFCP PHASE1:Hg19::chr1:151043216..151043256,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:151043216..151043256,+ to FFCP PHASE1:Hg19::chr1:151043216..151043256,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=126626 | |EntrezGene=126626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28441 | |HGNC=28441 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000489549_5end | |||
|cluster_id=chr1:151043216..151043256,+ | |||
|description=CAGE_peak_1_at_GABPB2_5end | |||
|id=chr1:151043216..151043256,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.22e-25!115;UBERON:0001049!4.24e-14!57;UBERON:0005068!4.24e-14!57;UBERON:0006241!4.24e-14!57;UBERON:0007135!4.24e-14!57;UBERON:0002616!2.40e-12!59;UBERON:0003080!2.59e-12!42;UBERON:0000955!5.13e-12!69;UBERON:0006238!5.13e-12!69;UBERON:0002780!9.17e-12!41;UBERON:0001890!9.17e-12!41;UBERON:0006240!9.17e-12!41;UBERON:0000153!1.10e-09!129;UBERON:0007811!1.10e-09!129;UBERON:0002020!5.84e-09!34;UBERON:0003528!5.84e-09!34;UBERON:0001893!7.57e-09!34;UBERON:0002346!8.84e-09!90;UBERON:0000073!1.12e-08!94;UBERON:0001016!1.12e-08!94;UBERON:0002791!1.22e-08!33;UBERON:0001017!1.40e-08!82;UBERON:0000033!2.76e-08!123;UBERON:0005743!2.89e-08!86;UBERON:0001869!6.57e-08!32;UBERON:0003075!8.76e-08!86;UBERON:0007284!8.76e-08!86;UBERON:0000924!3.80e-07!173;UBERON:0006601!3.80e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.04e-09;41!UBERON:0001890;8.04e-09;41!UBERON:0007023;2.27e-08;114!UBERON:0000073;1.27e-07;53!UBERON:0002616;1.27e-07;53!UBERON:0003528;1.64e-07;34!UBERON:0002020;1.64e-07;34!UBERON:0001893;2.19e-07;34!UBERON:0002791;3.42e-07;32!UBERON:0001869;5.76e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.29e-25,114;UBERON:0001049,1.59e-13,56;UBERON:0005068,1.59e-13,56;UBERON:0006241,1.59e-13,56;UBERON:0007135,1.59e-13,56;UBERON:0000073,1.41e-12,53;UBERON:0002616,1.41e-12,53;UBERON:0002780,8.04e-12,41;UBERON:0001890,8.04e-12,41;UBERON:0003080,8.04e-12,41;UBERON:0006240,8.04e-12,41;UBERON:0000955,1.72e-11,68;UBERON:0006238,1.72e-11,68;UBERON:0002346,3.89e-09,86;UBERON:0003528,5.31e-09,34;UBERON:0002020,5.31e-09,34;UBERON:0001893,6.89e-09,34;UBERON:0001016,1.40e-08,89;UBERON:0001017,3.52e-08,81;UBERON:0002791,3.62e-08,32;UBERON:0003075,4.16e-08,82;UBERON:0007284,4.16e-08,82;UBERON:0001869,6.05e-08,32;UBERON:0011216,2.36e-07,223;UBERON:0004121,5.28e-07,171;UBERON:0000924,5.28e-07,171;UBERON:0006601,5.28e-07,171;UBERON:0010371,8.12e-07,104;UBERON:0002619,9.88e-07,22 | |||
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| ||
|short_description=p1@GABPB2 | |||
}} | }} |
Latest revision as of 00:17, 17 September 2015
Short description: | p1@GABPB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GABPB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000489549_5end |
EntrezGene: | GABPB2 |
HGNC: | 28441 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.29e-25 | 114 |
neural tube | 1.59e-13 | 56 |
neural rod | 1.59e-13 | 56 |
future spinal cord | 1.59e-13 | 56 |
neural keel | 1.59e-13 | 56 |
regional part of nervous system | 1.41e-12 | 53 |
regional part of brain | 1.41e-12 | 53 |
regional part of forebrain | 8.04e-12 | 41 |
forebrain | 8.04e-12 | 41 |
anterior neural tube | 8.04e-12 | 41 |
future forebrain | 8.04e-12 | 41 |
brain | 1.72e-11 | 68 |
future brain | 1.72e-11 | 68 |
neurectoderm | 3.89e-09 | 86 |
brain grey matter | 5.31e-09 | 34 |
gray matter | 5.31e-09 | 34 |
telencephalon | 6.89e-09 | 34 |
nervous system | 1.40e-08 | 89 |
central nervous system | 3.52e-08 | 81 |
regional part of telencephalon | 3.62e-08 | 32 |
neural plate | 4.16e-08 | 82 |
presumptive neural plate | 4.16e-08 | 82 |
cerebral hemisphere | 6.05e-08 | 32 |
organ system subdivision | 2.36e-07 | 223 |
ectoderm-derived structure | 5.28e-07 | 171 |
ectoderm | 5.28e-07 | 171 |
presumptive ectoderm | 5.28e-07 | 171 |
ecto-epithelium | 8.12e-07 | 104 |
regional part of cerebral cortex | 9.88e-07 | 22 |