FFCP PHASE1:Hg19::chr20:6034672..6034714,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:6034672..6034714,-
|short_description=p2@LRRN4
|description=CAGE_peak_2_at_LRRN4_5end
|association_with_transcript=0bp_to_ENST00000378858,NM_152611,uc002w...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=164312 | |EntrezGene=164312 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16208 | |HGNC=16208 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WUT4,Q6ZMD1 | |UniProt=Q8WUT4,Q6ZMD1 | ||
|association_with_transcript=0bp_to_ENST00000378858,NM_152611,uc002wmo.2,uc002wmp.2_5end | |||
|cluster_id=chr20:6034672..6034714,- | |||
|coexpression_cluster_id=C548 | |||
|description=CAGE_peak_2_at_LRRN4_5end | |||
|id=chr20:6034672..6034714,- | |||
|ontology_enrichment_celltype=CL:1000497!1.11e-23!18;CL:0002518!1.11e-23!18;CL:1000449!4.75e-21!16;CL:0002681!1.52e-16!13;CL:0002584!1.52e-16!13;CL:1000507!1.03e-15!12;CL:1000494!1.03e-15!12;CL:0000066!2.34e-13!254;CL:1000612!8.40e-11!7;CL:1000746!8.40e-11!7;CL:0000077!2.64e-10!19;CL:0000666!5.62e-07!4;CL:0002188!5.62e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.30e-43;17!CL:0002518;2.30e-43;17!CL:1000449;3.52e-43;15!CL:1000507;8.61e-35;10!CL:1000494;8.61e-35;10!CL:0002681;3.31e-33;12!CL:0002584;3.31e-33;12!CL:0000077;2.65e-20;19!CL:1000746;4.31e-17;7!CL:1000612;4.31e-17;7!CL:0000239;9.41e-12;3!CL:1000615;9.41e-12;3!CL:0002306;9.41e-12;3!CL:0002188;9.71e-11;5!CL:0000650;2.20e-08;2!CL:1000500;2.20e-08;2!CL:1000618;2.20e-08;2!CL:1001318;2.20e-08;2!CL:0002173;2.20e-08;2!CL:0000213;3.48e-07;58!CL:0000215;3.48e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.02e-43,17;CL:0002518,2.02e-43,17;CL:1000449,3.06e-43,15;CL:1000507,8.34e-35,10;CL:1000494,8.34e-35,10;CL:0002681,2.93e-33,12;CL:0002584,2.93e-33,12;CL:0000077,2.81e-20,19;CL:1000746,3.91e-17,7;CL:1000612,3.91e-17,7;CL:0000066,6.90e-13,253;CL:0000239,9.42e-12,3;CL:1000615,9.42e-12,3;CL:0002306,9.42e-12,3;CL:0000213,2.52e-11,58;CL:0000215,2.52e-11,58;CL:0002188,8.87e-11,5;CL:0000650,2.20e-08,2;CL:1000500,2.20e-08,2;CL:1000618,2.20e-08,2;CL:1001318,2.20e-08,2;CL:0002173,2.20e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!8.08e-12!29;DOID:120!1.02e-11!27;DOID:299!2.98e-08!25;DOID:2394!3.07e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:120;1.11e-21;27!DOID:193;5.93e-20;29!DOID:2394;6.95e-15;14!DOID:4468;3.81e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:120,8.77e-22,27;DOID:193,4.78e-20,29;DOID:2394,6.97e-15,14;DOID:4468,4.02e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0006555!3.62e-22!17;UBERON:0005103!3.62e-22!17;UBERON:0000083!3.62e-22!17;UBERON:0009201!3.62e-22!17;UBERON:0004819!3.62e-22!17;UBERON:0006553!3.62e-22!17;UBERON:0003074!3.62e-22!17;UBERON:0003060!3.62e-22!17;UBERON:0004211!4.75e-21!16;UBERON:0001285!4.75e-21!16;UBERON:0007684!4.75e-21!16;UBERON:0003220!4.75e-21!16;UBERON:0004208!4.75e-21!16;UBERON:0000080!1.24e-20!18;UBERON:0002120!1.24e-20!18;UBERON:0004875!1.24e-20!18;UBERON:0005721!1.24e-20!18;UBERON:0005754!1.24e-20!18;UBERON:0007297!1.24e-20!18;UBERON:0002113!1.00e-19!27;UBERON:0003918!1.00e-19!27;UBERON:0005095!1.00e-19!27;UBERON:0007687!1.00e-19!27;UBERON:0005172!4.74e-19!55;UBERON:0005173!4.74e-19!55;UBERON:0004876!5.00e-18!20;UBERON:0000058!8.50e-18!26;UBERON:0003887!6.47e-17!21;UBERON:0001225!1.52e-16!13;UBERON:0008987!1.52e-16!13;UBERON:0002417!3.46e-16!61;UBERON:0000916!3.46e-16!61;UBERON:0009773!1.03e-15!12;UBERON:0001231!1.03e-15!12;UBERON:0004810!1.03e-15!12;UBERON:0000489!1.36e-15!32;UBERON:0000466!3.10e-15!126;UBERON:0001851!3.25e-15!16;UBERON:0000353!5.93e-14!17;UBERON:0005177!8.72e-14!107;UBERON:0006554!5.12e-13!44;UBERON:0001008!1.44e-12!45;UBERON:0003064!3.39e-12!37;UBERON:0009569!1.03e-11!113;UBERON:0003886!1.09e-11!63;UBERON:0000464!5.58e-11!104;UBERON:0000074!8.40e-11!7;UBERON:0001229!8.40e-11!7;UBERON:0001230!8.40e-11!7;UBERON:0005749!8.40e-11!7;UBERON:0004199!8.40e-11!7;UBERON:0004209!8.40e-11!7;UBERON:0004198!8.40e-11!7;UBERON:0003103!9.18e-10!69;UBERON:0002553!1.05e-09!70;UBERON:0005911!1.61e-08!82;UBERON:0003929!3.27e-08!54;UBERON:0003914!1.19e-07!118;UBERON:0009856!3.31e-07!26;UBERON:0003133!5.39e-07!48;UBERON:0005156!8.61e-07!59;UBERON:0000990!8.61e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.52e-43;15!UBERON:0004819;3.52e-43;15!UBERON:0001285;3.52e-43;15!UBERON:0007684;3.52e-43;15!UBERON:0004211;8.61e-35;10!UBERON:0009773;8.61e-35;10!UBERON:0001231;8.61e-35;10!UBERON:0004810;8.61e-35;10!UBERON:0002113;9.41e-34;24!UBERON:0011143;9.41e-34;24!UBERON:0001225;3.31e-33;12!UBERON:0008987;3.31e-33;12!UBERON:0001851;3.61e-31;15!UBERON:0000353;7.91e-31;15!UBERON:0000489;3.21e-27;29!UBERON:0006554;3.56e-26;30!UBERON:0001008;3.56e-26;30!UBERON:0005172;1.74e-18;52!UBERON:0005173;1.74e-18;52!UBERON:0000074;4.31e-17;7!UBERON:0001229;4.31e-17;7!UBERON:0002417;1.90e-12;58!UBERON:0000916;1.90e-12;58!UBERON:0006853;9.41e-12;3!UBERON:0007685;9.41e-12;3!UBERON:0004134;9.41e-12;3!UBERON:0005177;3.26e-09;99!UBERON:0003567;2.20e-08;2!UBERON:0003838;2.20e-08;2!UBERON:0003586;2.20e-08;2!UBERON:0005169;2.20e-08;2!UBERON:0002321;2.20e-08;2!UBERON:0005215;2.20e-08;2!UBERON:0002303;2.20e-08;2!UBERON:0002319;2.20e-08;2!UBERON:0003103;2.68e-07;61!UBERON:0003134;6.89e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,3.06e-43,15;UBERON:0009773,3.06e-43,15;UBERON:0001231,3.06e-43,15;UBERON:0001285,3.06e-43,15;UBERON:0007684,3.06e-43,15;UBERON:0004208,3.06e-43,15;UBERON:0006555,2.57e-40,16;UBERON:0004819,2.57e-40,16;UBERON:0004810,8.34e-35,10;UBERON:0001225,2.93e-33,12;UBERON:0008987,2.93e-33,12;UBERON:0001851,3.34e-31,15;UBERON:0000353,6.76e-31,15;UBERON:0002113,7.01e-31,26;UBERON:0003918,7.01e-31,26;UBERON:0011143,7.01e-31,26;UBERON:0005095,7.01e-31,26;UBERON:0007687,7.01e-31,26;UBERON:0005172,2.00e-25,54;UBERON:0005173,2.00e-25,54;UBERON:0000489,3.11e-25,31;UBERON:0002417,2.63e-22,60;UBERON:0000916,2.63e-22,60;UBERON:0006554,2.12e-19,47;UBERON:0001008,6.70e-19,48;UBERON:0010532,3.91e-17,7;UBERON:0000074,3.91e-17,7;UBERON:0001229,3.91e-17,7;UBERON:0001230,3.91e-17,7;UBERON:0003220,3.91e-17,7;UBERON:0005749,3.91e-17,7;UBERON:0004199,3.91e-17,7;UBERON:0004209,3.91e-17,7;UBERON:0004198,3.91e-17,7;UBERON:0005177,2.07e-16,101;UBERON:0005103,6.55e-15,8;UBERON:0000083,6.55e-15,8;UBERON:0009201,6.55e-15,8;UBERON:0006553,6.55e-15,8;UBERON:0003074,6.55e-15,8;UBERON:0003060,6.55e-15,8;UBERON:0009569,3.70e-14,112;UBERON:0000080,3.53e-13,9;UBERON:0002120,3.53e-13,9;UBERON:0004875,3.53e-13,9;UBERON:0005721,3.53e-13,9;UBERON:0005754,3.53e-13,9;UBERON:0007297,3.53e-13,9;UBERON:0006853,9.42e-12,3;UBERON:0007685,9.42e-12,3;UBERON:0004134,9.42e-12,3;UBERON:0004876,1.17e-10,11;UBERON:0003103,1.18e-10,68;UBERON:0003887,1.03e-09,12;UBERON:0003567,2.20e-08,2;UBERON:0003838,2.20e-08,2;UBERON:0003586,2.20e-08,2;UBERON:0005169,2.20e-08,2;UBERON:0002321,2.20e-08,2;UBERON:0005215,2.20e-08,2;UBERON:0002303,2.20e-08,2;UBERON:0002319,2.20e-08,2;UBERON:0000058,8.46e-08,19;UBERON:0003914,1.01e-07,117;UBERON:0003134,3.71e-07,37;UBERON:0000474,3.71e-07,37 | |||
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| ||
|short_description=p2@LRRN4 | |||
}} | }} |
Latest revision as of 09:46, 17 September 2015
Short description: | p2@LRRN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRN4_5end |
Coexpression cluster: | C548_Mesothelial_mesenchymal_rhabdomyosarcoma_Renal_mesothelioma_Hepatic_clear |
Association with transcript: | 0bp_to_ENST00000378858, NM_152611, uc002wmo.2, uc002wmp.2_5end |
EntrezGene: | LRRN4 |
HGNC: | 16208 |
UniProt: | Q8WUT4Q6ZMD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.02e-43 | 17 |
kidney epithelial cell | 2.02e-43 | 17 |
epithelial cell of nephron | 3.06e-43 | 15 |
kidney tubule cell | 8.34e-35 | 10 |
nephron tubule epithelial cell | 8.34e-35 | 10 |
kidney cortical cell | 2.93e-33 | 12 |
renal cortical epithelial cell | 2.93e-33 | 12 |
mesothelial cell | 2.81e-20 | 19 |
glomerular cell | 3.91e-17 | 7 |
kidney corpuscule cell | 3.91e-17 | 7 |
epithelial cell | 6.90e-13 | 253 |
brush border epithelial cell | 9.42e-12 | 3 |
kidney cortex tubule cell | 9.42e-12 | 3 |
epithelial cell of proximal tubule | 9.42e-12 | 3 |
lining cell | 2.52e-11 | 58 |
barrier cell | 2.52e-11 | 58 |
glomerular endothelial cell | 8.87e-11 | 5 |
mesangial cell | 2.20e-08 | 2 |
kidney interstitial cell | 2.20e-08 | 2 |
juxtaglomerular complex cell | 2.20e-08 | 2 |
renal interstitial pericyte | 2.20e-08 | 2 |
extraglomerular mesangial cell | 2.20e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 8.77e-22 | 27 |
reproductive organ cancer | 4.78e-20 | 29 |
ovarian cancer | 6.97e-15 | 14 |
clear cell adenocarcinoma | 4.02e-08 | 2 |