FFCP PHASE1:Hg19::chr9:4299979..4299996,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=169792 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28510 | |||
|TSSclassifier=strong | |||
|UniProt=Q1PHJ8,Q8NEA6 | |||
|association_with_transcript=38bp_to_NM_001042413,uc003zhx.1,uc003zif.1,uc003zig.1,uc003zih.1,uc003zii.1_5end | |||
|cluster_id=chr9:4299979..4299996,- | |||
|coexpression_cluster_id=C2945 | |||
|description=CAGE_peak_3_at_GLIS3_5end | |||
|id=chr9:4299979..4299996,- | |||
|ontology_enrichment_celltype=CL:0000055!3.41e-09!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.12e-08;33!CL:0002057;4.12e-08;33 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!1.90e-19!511;UBERON:0000467!2.24e-18!625;UBERON:0000468!3.37e-18!659;UBERON:0000480!4.25e-18!626;UBERON:0000475!1.19e-17!365;UBERON:0000477!1.25e-15!286;UBERON:0004111!1.71e-15!241;UBERON:0002050!2.43e-15!605;UBERON:0005423!2.43e-15!605;UBERON:0000025!3.34e-15!194;UBERON:0000922!5.14e-15!612;UBERON:0000923!6.55e-15!604;UBERON:0005291!6.55e-15!604;UBERON:0006598!6.55e-15!604;UBERON:0002532!6.55e-15!604;UBERON:0000483!4.78e-14!309;UBERON:0000119!4.91e-14!312;UBERON:0000481!7.95e-14!347;UBERON:0001049!2.28e-12!57;UBERON:0005068!2.28e-12!57;UBERON:0006241!2.28e-12!57;UBERON:0007135!2.28e-12!57;UBERON:0000955!3.36e-12!69;UBERON:0006238!3.36e-12!69;UBERON:0001017!1.06e-11!82;UBERON:0002616!2.51e-11!59;UBERON:0005743!4.00e-11!86;UBERON:0003075!4.48e-11!86;UBERON:0007284!4.48e-11!86;UBERON:0002100!1.05e-09!216;UBERON:0007023!1.28e-09!115;UBERON:0003080!1.41e-09!42;UBERON:0002780!1.80e-09!41;UBERON:0001890!1.80e-09!41;UBERON:0006240!1.80e-09!41;UBERON:0002346!2.36e-09!90;UBERON:0002020!2.58e-09!34;UBERON:0003528!2.58e-09!34;UBERON:0005256!3.38e-09!143;UBERON:0000073!4.15e-09!94;UBERON:0001016!4.15e-09!94;UBERON:0002791!1.15e-08!33;UBERON:0001893!2.04e-08!34;UBERON:0003056!2.34e-08!61;UBERON:0000033!3.59e-08!123;UBERON:0001869!8.39e-08!32;UBERON:0000153!1.23e-07!129;UBERON:0007811!1.23e-07!129;UBERON:0000926!6.40e-07!448;UBERON:0004120!6.40e-07!448;UBERON:0006603!6.40e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;3.61e-07;32!UBERON:0003528;3.69e-07;34!UBERON:0002020;3.69e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.29e-11,56;UBERON:0005068,5.29e-11,56;UBERON:0006241,5.29e-11,56;UBERON:0007135,5.29e-11,56;UBERON:0000955,1.34e-10,68;UBERON:0006238,1.34e-10,68;UBERON:0000025,2.19e-10,192;UBERON:0004111,3.81e-10,240;UBERON:0003075,4.46e-10,82;UBERON:0007284,4.46e-10,82;UBERON:0000483,1.48e-09,306;UBERON:0001017,1.53e-09,81;UBERON:0010314,1.97e-09,132;UBERON:0000073,2.09e-09,53;UBERON:0002616,2.09e-09,53;UBERON:0005423,3.76e-09,581;UBERON:0000119,4.28e-09,309;UBERON:0002346,7.97e-09,86;UBERON:0000922,1.39e-08,592;UBERON:0003528,2.06e-08,34;UBERON:0002020,2.06e-08,34;UBERON:0002780,3.45e-08,41;UBERON:0001890,3.45e-08,41;UBERON:0003080,3.45e-08,41;UBERON:0006240,3.45e-08,41;UBERON:0001016,6.81e-08,89;UBERON:0003104,1.32e-07,160;UBERON:0009142,1.32e-07,160;UBERON:0002791,1.68e-07,32;UBERON:0001893,3.08e-07,34;UBERON:0003056,6.01e-07,61;UBERON:0010371,7.09e-07,104;UBERON:0007023,8.48e-07,114 | |||
|phase1_expression=0.726713517082227,1.2846031433459,2.53717927372748,2.00146596706261,1.34088328328186,0,0,0,0.261185628199839,0.737201809504527,1.39560233594486,1.31064823278103,0.527533956456907,2.22779435328084,2.31978163009541,0.672325146451775,3.01347264011988,2.19093027116212,1.46379839637152,0.738726348460727,2.85600967741954,3.76145665773705,3.43483184557268,6.98059567871709,6.02604670055053,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0,0,0,0,0,0.802177789880567,0.651032612147555,0.223915474239924,0.32389366601898,0.515151135268373,1.45398238779565,3.40088349319928,3.88134497900506,1.62700325833979,6.98985409637104,4.02618282163635,2.8769239232215,6.14785695669842,4.7296445977717,0,1.29096936716765,1.35426486594342,2.25890807451126,5.73102915121476,3.14612878223118,1.83650335422542,4.8139354061414,4.47535988059329,1.64925650093358,3.78980949481101,3.40979800426155,0.580418477257168,3.97169657283798,2.4912889959823,2.51248665256743,9.38669253156363,5.42972111762792,0.605399502633369,2.57794345191295,0.632924774881769,0,0.425208599930087,0.209658645508376,0,0.150176892841506,0.16072558669708,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,4.87613732627923,2.01210257911091,0.639312809217652,0.722878304769133,3.50936537445123,2.75208386025565,0,2.91980922181582,2.3633704291017,5.76496433402666,3.77689578480442,1.83370705696798,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0.626984899610432,0.516833518338658,0,0.66944122552934,0.402829317109147,0.760272105718513,1.22031028774085,0.367663080345869,0,0.803697554556718,0.22452937262617,0.563057402416611,0,0,0.366403487860815,0,3.87780264148325,0,0.496971951695318,1.51956613997496,2.91300197789081,3.44203944898576,0.709336764396714,1.68203280042692,0,1.72667283892012,1.24484414159907,2.15537075311501,1.9615428373615,1.51357427644931,1.72852777344,0.70296429550139,0.312160076830321,0.570471821544449,0.747243402759005,1.17434498643765,2.75184005425824,1.40450806702248,1.22492502752936,0.982674538494144,1.03325781175765,1.18800285728205,2.96720315134268,0,1.43723628363248,0.336672227908132,0.375355559615893,0.831192346452549,1.31693286264251,0.30648779579902,3.90618953157152,0.567160915800105,1.4351170855109,0.640672166455702,1.27159140695737,0.600182192168805,0.515262646192195,1.28820270022815,0.18611685633159,4.05063197379039,0.584622030967192,2.77677151668526,0.368199594569197,1.2931684545505,3.19508633264953,0.302256294682921,0.339121184620975,0.193260853163297,0.272746120590835,0.286804595389004,0,0,0,0.414644220061482,0.252320850875628,0,3.12899064659632,3.85944562915731,2.76269842704961,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,2.80483547606892,1.2347220339942,2.94017422771084,0,0.982827216677626,1.77236972004421,0,0.368965315629341,0.514703430895577,0,0,0,0,0.977424915930974,1.03993478527958,0,1.85488647960123,1.17408694235822,1.44366447761074,2.77791307545966,2.85381228351897,0,0,0.984868024349589,0,0.148631162288728,0,0,0.141775097242386,0,0.290633938513962,0,0,0,0.829312462163088,3.45887888200707,0.37872730027914,0,0,0,0,0.205654985406647,0,0,0.672786506072164,0.87192013766656,0.36669142910475,2.58543431515556,0,2.535908257668,0.26593811658487,1.04007436911366,0,0,0,2.14466990487221,0.542621605391443,0,1.30294473717494,1.77695974371273,0.791951872933429,1.20575750823834,0,3.499054691372,0,0,0,0,0,0,1.73737568001095,1.64381058040307,0,0,0,0,0,1.77866236955724,1.30139853857622,0,0.502548796003046,0.637938751653163,0,2.99161459204025,0,2.20844685094452,2.50085260529839,1.08506009479894,3.53550464602372,2.14114786556594,2.68094105557689,3.27995961979597,0.601892199455438,0,2.0694614258501,0,0.553107505625109,0.955719759148911,0.587403472388222,0.343143423810856,0,0.215714200818617,0.320182673410333,0.606255142892519,0,0.30239029332968,0.744323423456331,1.68808170616869,2.52594084989766,2.05022638809122,2.04682899626681,2.0911009748669,5.93672265779964,0.308419387605311,1.59805552781814,0.657017248110473,0.519254429183621,0.929683027679674,0,0.200506470303285,0.0920809889358963,0.918515585316854,1.63882051206045,1.83574180943194,1.80479845162965,2.0794141018192,3.13739907670742,0,2.63879072232189,0,0.340187410553031,0.863663664408557,0,1.35473218771926,2.50844886927427,1.01950509218015,1.66215201785745,5.59686886805446,0,0,0,0.656029291399411,0.325378394664303,1.64865618636356,0.54941678891006,0.082509499920588,0,0,1.6068392984416,0.580024309752732,1.54048617114644,2.6095624703442,2.34322173223702,1.93356440762893,3.62541734785571,1.70453254832202,0.267096106940212,0,0,0.382838137483752,0.30347334256665,0.464845549297286,1.88887408098384,1.3940745403212,4.31247012246524,1.06461206063404,0.869932992075073,2.59453906745488,2.00374841438788,0.744316738719335,0.316379424718726,4.38449446024797,0.511795582622668,1.28381696410176,0.636406495851874,0.78494864019923,1.79872457583315,1.64722217841633,1.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| |||
|short_description=p3@GLIS3 | |||
}} |
Latest revision as of 12:20, 17 September 2015
Short description: | p3@GLIS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GLIS3_5end |
Coexpression cluster: | C2945_seminal_extraskeletal_leiomyoblastoma_thyroid_spinal_serous_ductus |
Association with transcript: | 38bp_to_NM_001042413, uc003zhx.1, uc003zif.1, uc003zig.1, uc003zih.1, uc003zii.1_5end |
EntrezGene: | GLIS3 |
HGNC: | 28510 |
UniProt: | Q1PHJ8Q8NEA6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 5.29e-11 | 56 |
neural rod | 5.29e-11 | 56 |
future spinal cord | 5.29e-11 | 56 |
neural keel | 5.29e-11 | 56 |
brain | 1.34e-10 | 68 |
future brain | 1.34e-10 | 68 |
tube | 2.19e-10 | 192 |
anatomical conduit | 3.81e-10 | 240 |
neural plate | 4.46e-10 | 82 |
presumptive neural plate | 4.46e-10 | 82 |
epithelium | 1.48e-09 | 306 |
central nervous system | 1.53e-09 | 81 |
structure with developmental contribution from neural crest | 1.97e-09 | 132 |
regional part of nervous system | 2.09e-09 | 53 |
regional part of brain | 2.09e-09 | 53 |
developing anatomical structure | 3.76e-09 | 581 |
cell layer | 4.28e-09 | 309 |
neurectoderm | 7.97e-09 | 86 |
embryo | 1.39e-08 | 592 |
brain grey matter | 2.06e-08 | 34 |
gray matter | 2.06e-08 | 34 |
regional part of forebrain | 3.45e-08 | 41 |
forebrain | 3.45e-08 | 41 |
anterior neural tube | 3.45e-08 | 41 |
future forebrain | 3.45e-08 | 41 |
nervous system | 6.81e-08 | 89 |
mesenchyme | 1.32e-07 | 160 |
entire embryonic mesenchyme | 1.32e-07 | 160 |
regional part of telencephalon | 1.68e-07 | 32 |
telencephalon | 3.08e-07 | 34 |
pre-chordal neural plate | 6.01e-07 | 61 |
ecto-epithelium | 7.09e-07 | 104 |
adult organism | 8.48e-07 | 114 |