FFCP PHASE1:Hg19::chr1:156123359..156123387,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64218 | |EntrezGene=64218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10729 | |HGNC=10729 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TCJ5,Q5TCJ6,B3KR76,Q9H3S1 | |UniProt=Q5TCJ5,Q5TCJ6,B3KR76,Q9H3S1 | ||
|association_with_transcript=0bp_to_ENST00000368283,ENST00000368284,ENST00000368286,ENST00000544376,NM_001193302,uc001fnm.2,uc001fnn.2_5end | |association_with_transcript=0bp_to_ENST00000368283,ENST00000368284,ENST00000368286,ENST00000544376,NM_001193302,uc001fnm.2,uc001fnn.2_5end | ||
|cluster_id=chr1:156123359..156123387,+ | |||
|description=CAGE_peak_2_at_SEMA4A_5end | |description=CAGE_peak_2_at_SEMA4A_5end | ||
|id=chr1:156123359..156123387,+ | |id=chr1:156123359..156123387,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.14e-18!43;CL:0000066!1.45e-14!254;CL:0000223!1.41e-13!59;CL:0002368!1.86e-12!13;CL:0002202!1.30e-08!9;CL:0002632!1.30e-08!9;CL:0002159!4.10e-08!13;CL:0002251!8.63e-08!21 | |ontology_enrichment_celltype=CL:0002076!1.14e-18!43;CL:0000066!1.45e-14!254;CL:0000223!1.41e-13!59;CL:0002368!1.86e-12!13;CL:0002202!1.30e-08!9;CL:0002632!1.30e-08!9;CL:0002159!4.10e-08!13;CL:0002251!8.63e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.37e-17;42!CL:0002368;1.60e-16;13!CL:0002202;2.68e-11;9!CL:0002632;2.68e-11;9!CL:0002159;5.64e-10;14!CL:0000244;8.49e-08;4!CL:0000731;8.49e-08;4!CL:0002251;1.37e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.36e-22,42;CL:0000066,1.95e-18,253;CL:0002368,1.53e-16,13;CL:0000223,2.24e-15,58;CL:0002202,2.54e-11,9;CL:0002632,2.54e-11,9;CL:0002159,5.74e-10,14;CL:0000244,7.95e-08,4;CL:0000731,7.95e-08,4;CL:0002251,1.36e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;9.03e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!1.36e-10!14 | |ontology_enrichment_disease=DOID:1749!1.36e-10!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.89e-12;14!DOID:5093;6.45e-07;4!DOID:1612;6.45e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.96e-12,14;DOID:5093,6.66e-07,4;DOID:1612,6.66e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.27e-22!169;UBERON:0000925!1.27e-22!169;UBERON:0006595!1.27e-22!169;UBERON:0001007!1.59e-15!155;UBERON:0001555!1.59e-15!155;UBERON:0007026!1.59e-15!155;UBERON:0001004!6.76e-15!72;UBERON:0007023!1.07e-12!115;UBERON:0004921!2.06e-12!129;UBERON:0004185!2.06e-12!129;UBERON:0000464!3.40e-12!104;UBERON:0000077!9.93e-12!130;UBERON:0000161!2.34e-10!35;UBERON:0000466!2.50e-10!126;UBERON:0000062!2.76e-10!511;UBERON:0000065!8.20e-10!53;UBERON:0000166!1.04e-09!21;UBERON:0005631!1.89e-09!14;UBERON:0000158!1.89e-09!14;UBERON:0005178!3.56e-09!34;UBERON:0002224!3.56e-09!34;UBERON:0005911!7.96e-09!82;UBERON:0000064!8.91e-09!219;UBERON:0005181!9.80e-09!35;UBERON:0005153!3.31e-08!37;UBERON:0001041!4.68e-08!98;UBERON:0000468!9.02e-08!659;UBERON:0000915!1.10e-07!52;UBERON:0007196!1.22e-07!14;UBERON:0001558!1.22e-07!14;UBERON:0005177!1.39e-07!107;UBERON:0003124!2.24e-07!7;UBERON:0001008!2.27e-07!45;UBERON:0000165!2.85e-07!28;UBERON:0000930!2.85e-07!28;UBERON:0004175!3.67e-07!25;UBERON:0000365!5.05e-07!5;UBERON:0000922!5.96e-07!612;UBERON:0006554!5.99e-07!44 | |ontology_enrichment_uberon=UBERON:0004119!1.27e-22!169;UBERON:0000925!1.27e-22!169;UBERON:0006595!1.27e-22!169;UBERON:0001007!1.59e-15!155;UBERON:0001555!1.59e-15!155;UBERON:0007026!1.59e-15!155;UBERON:0001004!6.76e-15!72;UBERON:0007023!1.07e-12!115;UBERON:0004921!2.06e-12!129;UBERON:0004185!2.06e-12!129;UBERON:0000464!3.40e-12!104;UBERON:0000077!9.93e-12!130;UBERON:0000161!2.34e-10!35;UBERON:0000466!2.50e-10!126;UBERON:0000062!2.76e-10!511;UBERON:0000065!8.20e-10!53;UBERON:0000166!1.04e-09!21;UBERON:0005631!1.89e-09!14;UBERON:0000158!1.89e-09!14;UBERON:0005178!3.56e-09!34;UBERON:0002224!3.56e-09!34;UBERON:0005911!7.96e-09!82;UBERON:0000064!8.91e-09!219;UBERON:0005181!9.80e-09!35;UBERON:0005153!3.31e-08!37;UBERON:0001041!4.68e-08!98;UBERON:0000468!9.02e-08!659;UBERON:0000915!1.10e-07!52;UBERON:0007196!1.22e-07!14;UBERON:0001558!1.22e-07!14;UBERON:0005177!1.39e-07!107;UBERON:0003124!2.24e-07!7;UBERON:0001008!2.27e-07!45;UBERON:0000165!2.85e-07!28;UBERON:0000930!2.85e-07!28;UBERON:0004175!3.67e-07!25;UBERON:0000365!5.05e-07!5;UBERON:0000922!5.96e-07!612;UBERON:0006554!5.99e-07!44 | ||
|ontology_enrichment_uberon_v019=UBERON:0000974;1.13e-09;6!UBERON:0005178;1.53e-09;34!UBERON:0002224;1.53e-09;34!UBERON:0007196;1.64e-09;15!UBERON:0001558;1.64e-09;15!UBERON:0000365;5.93e-09;5!UBERON:0005181;6.42e-09;35!UBERON:0000161;1.62e-08;19!UBERON:0000166;1.62e-08;19!UBERON:0000165;2.52e-08;28!UBERON:0000486;1.16e-07;12!UBERON:0005910;2.40e-07;6!UBERON:0000915;2.42e-07;52!UBERON:0000344;2.46e-07;20!UBERON:0005911;3.31e-07;36!UBERON:0003343;3.74e-07;4!UBERON:0004785;3.74e-07;4!UBERON:0001987;4.21e-07;4!UBERON:0001004;6.68e-07;65!UBERON:0003729;9.75e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.73e-20,160;UBERON:0000925,2.73e-20,160;UBERON:0006595,2.73e-20,160;UBERON:0001004,1.30e-17,74;UBERON:0000065,1.48e-12,54;UBERON:0001007,2.19e-12,145;UBERON:0001555,2.19e-12,145;UBERON:0007026,2.19e-12,145;UBERON:0006554,1.15e-11,47;UBERON:0001008,2.75e-11,48;UBERON:0005178,5.79e-11,34;UBERON:0002224,5.79e-11,34;UBERON:0000161,7.11e-11,36;UBERON:0005631,8.36e-11,14;UBERON:0000158,8.36e-11,14;UBERON:0005181,1.67e-10,35;UBERON:0000915,3.45e-10,52;UBERON:0005911,5.45e-10,82;UBERON:0005153,6.26e-10,37;UBERON:0000166,7.12e-10,22;UBERON:0007196,1.54e-09,15;UBERON:0001558,1.54e-09,15;UBERON:0005157,5.31e-09,47;UBERON:0000365,5.60e-09,5;UBERON:0000974,8.36e-09,10;UBERON:0004921,8.75e-09,118;UBERON:0000153,3.29e-08,62;UBERON:0007811,3.29e-08,62;UBERON:0000165,6.36e-08,29;UBERON:0000930,6.36e-08,29;UBERON:0004175,6.42e-08,25;UBERON:0005177,7.45e-08,101;UBERON:0003102,1.31e-07,99;UBERON:0001041,1.94e-07,87;UBERON:0003124,2.26e-07,7;UBERON:0005910,2.29e-07,6;UBERON:0000344,2.51e-07,20;UBERON:0003343,3.65e-07,4;UBERON:0004785,3.65e-07,4;UBERON:0001987,4.57e-07,4;UBERON:0004340,4.57e-07,4;UBERON:0000072,4.65e-07,47;UBERON:0009569,5.44e-07,112;UBERON:0008947,7.61e-07,38;UBERON:0003258,7.61e-07,38;UBERON:0003729,9.63e-07,13 | |||
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| ||
|short_description=p2@SEMA4A | |short_description=p2@SEMA4A | ||
}} | }} |
Latest revision as of 15:14, 17 September 2015
Short description: | p2@SEMA4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEMA4A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368283, ENST00000368284, ENST00000368286, ENST00000544376, NM_001193302, uc001fnm.2, uc001fnn.2_5end |
EntrezGene: | SEMA4A |
HGNC: | 10729 |
UniProt: | Q5TCJ5Q5TCJ6B3KR76Q9H3S1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.36e-22 | 42 |
epithelial cell | 1.95e-18 | 253 |
respiratory epithelial cell | 1.53e-16 | 13 |
endodermal cell | 2.24e-15 | 58 |
epithelial cell of tracheobronchial tree | 2.54e-11 | 9 |
epithelial cell of lower respiratory tract | 2.54e-11 | 9 |
general ecto-epithelial cell | 5.74e-10 | 14 |
transitional epithelial cell | 7.95e-08 | 4 |
urothelial cell | 7.95e-08 | 4 |
epithelial cell of alimentary canal | 1.36e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.96e-12 | 14 |
thoracic cancer | 6.66e-07 | 4 |
breast cancer | 6.66e-07 | 4 |